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The phantom was submerged in a water bath so that the background (water) showed higher intensity as contrasted to low intensity objects (acrylic plates). Three-dimensional MR images (TR/TE/flip angle/matrix/FOV/slice thickness: 12.8 ms/5.6 ms/5/256×256/160 mm/1.5 mm) of the phantom were obtained using a fast spoiled gradient-echo sequence (FSPGR). The voxel size was xy = 0.625(= 160256 ) (mm) and z = 1.5 (mm). Thus,

voxel anisotropy =

z

=

1.5

= 2.4.

(10.76)

xy

0.625

Thirteen datasets of 3D MR images were acquired with different normal positions of the phantom plates, eight with variable θ (θ = 0, 15, 25, 35, 45, 60, 75, and 90 degrees) and fixed φ (φ = 0), and five with variable φ (φ = 0, 15, 25, 35, and 45 degrees) and fixed θ (θ = 0). In the obtained MR images, we observed

L= L+ = 40 and L0 = 0. Figure 10.21(b) shows examples of the MR images. We compared actually measured thickness from the real MR data with the computational thickness calculated by the numerical simulations.

Figure 10.22 shows the averages and the SDs of the actually measured (in vitro) thickness from the MR data of the phantom imaged with different

T(mm)

 

τ = 3 mm

 

 

 

 

3

 

 

 

 

 

 

thickness

 

τ = 2 mm

 

 

 

 

2

τ = 1.5 mm

 

 

 

 

Measured

 

 

 

 

 

1

τ = 1 mm

 

 

 

 

 

 

 

 

 

 

 

 

0

15

30

45

60

75

90

 

Sheet normal orientation θ (deg)

T(mm)

 

τ = 3 mm

 

 

 

 

3

 

 

 

 

 

 

thickness

 

τ = 2 mm

 

 

 

 

2

τ = 1.5 mm

 

 

 

 

Measured

 

 

 

 

 

1

τ = 1 mm

 

 

 

 

 

 

 

 

 

 

 

 

0

15

30

45

60

75

90

 

Sheet normal orientation φ (deg)

(a)

(b)

Figure 10.22: Comparison of simulated thickness and in vitro thickness deter-

mined from MR images of acrylic plate phantom. xy = 0.625 mm, z = 1.5 mm,

1

and σ = 222 xy. For in vitro thickness, its average and SD values are indicated by symbols and error bars. (a) Dependences on sheet normal orientation θ .

(b) Dependences on sheet normal orientation φ. Note that the dependence on

φ is theoretically equivalent to the dependence on θ when the anisotropy is

z = 1. ( c 2004 IEEE)

xy

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θ and φ and the plots of the simulated thickness representing the dependences

on sheet normal orientation θ and φ. Figures 10.22(a) and 10.22(b) show the

plots of the dependences of θ and φ with σ = 22 xy, respectively. Good agreement between the simulated and the in vitro thicknesses was observed in both cases although the in vitro thicknesses was slightly greater than the simulated thickness. The biases, i.e., the difference between the simulated thickness and the average of in vitro thickness, were predominantly around 0.1 mm or less (except for θ = 75of τ = 3 mm), and the SDs of the in vitro thickness were mostly within 0.1 mm (except for θ = 45of τ = 2 mm and θ ≥ 35of τ = 3 mm). It should be noted that the dependence on φ is theoretically equivalent to

the dependence on θ when the anisotropy is z = 1.

xy

10.6 Concluding Remarks

We have presented a framework for multiscale analysis of the second-order local structures in medical volume data based on the analysis of the Hessian matrix. Multiscale filtering methods for enhancement of sheet, line, and blob structures were formulated. The guidelines for the filter design were clarified based on detailed analyses of singleand multiscale filter responses using mathematical local structure models. Further, formal approaches to description and quantification of sheet and line structures were presented. The accuracy of width quantification of sheet structures were theoretically analyzed and its inherent limits due to imaging resolution and postprocessing parameters were derived. In this chapter, we purely focus on local structures. Future work will include grouping these local structures to obtain higher-level descriptions incorporating global structures.

10.7 Acknowledgments

The author thanks Dr. Ron Kikinis and Dr. Shin Nakajima at Harvard Medical School and Brigham and Women’s Hospital for providing MR data of a brain, Dr. Hironobu Ohmatsu of the National Cancer Center, Japan, for providing CT data of a chest, Dr. Nobuyuki Shiraga at Keio University for providing abdominal CT data, Dr. Shigeyuki Yoshida at Osaka University for providing a CT data of a

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chest, and Dr. Katsuyuki Nakanishi, Dr. Hisashi Tanaka, Dr. Nobuhiko Sugano, and Dr. Takashi Nishii at Osaka University for providing hip joint MR data and phantom MR data. The author also thanks all the above researchers and Prof. Shinicni Tamura at Osaka University for fruitful discussion.

Questions

1.Summarize a series of procedures for multiscale enhancement filtering described in this chapter from input original images to output final filterenhanced images.

2.Explain the parameters involved in the procedures and discuss how to select these parameters.

3.Derive the mathematical formula of the width response curves shown in Fig. 10.3.

4.Discuss the effect of the anisotropic resolution (voxel shape) of input volume data on multiscale enhancement filtering.

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Chapter 11

A Knowledge-Based Scheme for Digital Mammography

Sameer Singh1 and Keir Bovis2

11.1 Introduction

The automated detection of lesions in the breast is important. The area of computer-aided detection (CAD) in digital mammography is devoted to developing sophisticated image analysis tools that can automatically detect breast lesions. The whole process can be viewed as a pipeline of subprocesses that are aimed at finding regions of interest (ROI) and classifying them in breast images. These processes (layers) are common to most medical imaging applications and involve image preprocessing, enhancement, segmentation, feature extraction, classification, and postprocessing for reducing false positives. There is a variety of algorithms for these processes available in medical imaging literature but little to guide their selection. There are only a few comparative studies that exhaustively compare different algorithms on large datasets and correlate the success of the algorithm with the type of data used. Most clinical studies use a preselected set of image analysis algorithms that are uniformly applied to all images. In our opinion, this practice is not good. In this chapter we demonstrate the use of a knowledge-based framework that integrates the various layers of analysis under an adaptive scheme. The main emphasis is to have at our disposal more than one algorithm per layer to produce the same type of output, and then

1 Pann Research, Department of Computer Science, University of Exeter, Exeter EX4 4QF,

UK

2 Met Office, Fitzroy Road, Exeter EX1 3PB, UK

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based on the properties of the image under consideration, predict the single best algorithm to be applied at each layer from this set. We demonstrate that this scheme of work has significant advantages over a nonadaptive structure (where only one algorithm is available per layer and it is fixed for all images in the dataset).

We aim to answer the following questions: (a) What is a knowledge-based framework? We discuss the components of this framework in section 11.2 putting it in the context of previous research. (b) How does the image enhancement layer work in this framework? This is detailed in section 11.3 where we discuss measures of image viewability based on enhancement, and demonstrate the role of good enhancement in image segmentation. We also propose two new mapping schemes that can map the image features to chosen enhancement methods. (c) How does the image segmentation layer work within the knowledgebased framework? In section 11.4 we detail the implementation of sophisticated Gaussian mixture models in both supervised and unsupervised modes, with an expert combination framework and compare them on overlap measures.

(d) What are the different strategies for reducing false positives? In section 11.5 we discuss several postprocessing steps that are aimed at reducing the number of false positives per image. (e) Is the adaptive knowledgebased framework superior to a nonadaptive scheme that uses the same algorithms across all images uniformly? We discuss our results on this issue in section 11.6 where we show the relative superiority of the adaptive framework.

11.2 Knowledge-Based Framework

The CAD scheme detailed in this chapter is based on an adaptive framework. An adaptive framework is capable of modifying itself such that it is more suitable to the environment within which it operates. Within the context of CAD, an adaptable component or a framework, attempts to automatically optimize the lesion detection process for a given mammogram. Broadly speaking, an adaptive characteristic can be built into CAD in three different ways: (1) Using a deterministic component; (2) knowledge-based component; (3) with a knowledge-based framework. Each approach may be used in combination with the others. These approaches are summarized below.