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18.2 Plant Tissue Culture 361
Table 18.2 Examples of biotransformation reactions of plant cell and organ cultures.
Plant Precursor Product References
Astasia longa (R)- and (S)-Carvone Dihydrocarvone and
Catharanthus roseus (cell suspension
cultures)
Catharanthus roseus (cell suspension cultures)
Centella asiatica Thiocolchicine 2-O- and 3-O-monoglucosyl
Daucus carota (immobilized plant cells) Codeinone Codeine [90]
Glycyrrhiza glabra (cell suspension
culture)
Peganum harmala (cell suspension culture)
Rauwolfia serpentina (cell suspensions) Hydroquinone Arbutin [93]
certain significant secondary metabolite formation and accumulation do not take place. Such cultures might still be able to turn interesting products from external substrates, though. The types of chemical substances that can go through biotransformation mediated by plant enzymes are varied [83]. The amount of enzyme activity present, the presence of side reactions producing undesirable byprod­ucts, the solubility of precursors, the localization of the enzymes, and the presence of enzymes degrading the desired product are just a few of the variables that will influence bio­conversion rates by plant cells and organs. Cells’ ability to convert nutrients into other forms can also be affected by elicitation, permeabilization, pH changes, and osmotic effects [84, 85]. Elicitors are biologically generated chemi­cals that induce secondary metabolite production; this stim­ulating process is known as elicitation. Endogenous elicitors are elicitors generated within plant cells, such as pectin, pec­tic acid, cellulose, and other polysaccharides. Exogenous elicitors, such as chitin, chitosan, and glucans are used to describe elicitors that are produced by microbes. All biologi­cally derived elicitors are biotic elicitors. Biotransformation reactions performed by plant cell and organ cultures are summarized in Table 18.2.
Vinblastine Vincristine [87]
Glychyrrhizin Glycyrrhetinic acid [88]
Papaverine Papaverinol [91]
Geranyl acetate, linalyl acetate
3. Helpful in developing transgenic plants.
4. Tissue culture may be used by plant breeders to evalu-
ate cells rather than plants for advantageous features such as herbicide tolerance or resistance.
5. Effective in haploid plant generation by anther or pol-
len culture.
6. Plant cells are cultivated in liquid culture in bioreac-
tors on a large scale to create valuable chemicals including recombinant proteins for use as biopharma­ceuticals and plant-derived secondary metabolites.
7. Biotransformation and secondary product biosynthesis
8. Useful for rapidly analyzing the molecular basis of
physiological, metabolic, and reproductive systems in plants, such as stress-tolerant plant selection and flow­ering study in vitro.
9. To cause chromosomal doubling and polyploidy.
10. Meristem tip culture, as employed in fruit and potato
crops, can be utilized to grow virus-free plants from virus-infected plants or stock.
11. The generation of sterile identical hybrid species can
be accomplished by tissue culture.
12. Biosynthetic pathways can be investigated with the
use of isolated organ and tissue cultures. An interpre-
isodihydrocarveol
derivatives
Geraniol, linalool, alpha-terpineol
tation of the routes can be made by feeding the tissue culture with the labeled precursor.

18.2.10 Applications of Plant Tissue Culture

Plant tissue culture has several applications which are summarized below.
1. The production of several identical individuals from a
mother plant is possible through tissue culture.
2. To preserve endangered or rare plant species.
13. Mutant Selection: In terms of crop improvement, one
significant application of cell cultures is in mutant selection. It is easier to isolate biochemical mutants from cell culture than it is from the entire plant. It is possible to screen a large number of cells for muta­genic therapies. Using this treatment cell lines resist­ant to fungal toxins, and herbicides are isolated.
[86]
[89]
[92]
362 18 Medicinal Plant Biotechnology
14. Creation of Artificial Seeds: Somatic embryos are
encapsulated in an appropriate matrix to create artifi­cial or synthetic seeds. The apical and basal meris­tematic regions of somatic embryos have a bipolar structure and can generate shoots and roots, respec­tively. Artificial seeds do not have endosperm or a seed coat like zygotic embryos. In order to compensate for these inadequacies, somatic embryos can be endosper­mized by encasing them in a suitable substance, such as sodium alginate, and supplementing them with growth regulators and nutrients. Longer storage times for synthetic seeds do not result in a loss of viability. Like regular seeds, they can be sown directly in the ground.
15. Somaclonal Variations: These are genetic variations
with desired or improved characteristics that are intro­duced into plants in plant breeding programs to create new varieties that can exhibit improved quality and yield, disease resistance, and other traits in plants such as cereals, legumes, oil seeds, tuber crops, etc. It is easier to perform somaclonal variation than recombi­nant DNA technology. The Central Institute for Medicinal and Aromatic Plants, Lucknow, India, has released Bio-13, a medicinal plant that is a somaclonal variety of Citronella java with 37% more oil, for com­mercial production.

18.3 Genetic Engineering (Recombinant DNA Technology)

In genetic engineering, a range of approaches are used to purposefully modify the genetic material, typically deox­yribonucleic acid (DNA), of the host organism in order to enhance its shape or function. Recombinant DNA tech­niques were developed in the second half of the twenti­eth century and frequently make use of bacteria or bacteriophages as well as direct microinjection. Genetic engineering is the systematic insertion of a foreign gene or genes into the DNA of an organism. Heterologous expression of foreign genes via suitable vectors can also be achieved using genetic engineering. The genes can be altered and reinserted into the same species, or they can be separated and transferred from one species to another. Transgenes, or new genes, are introduced into plants through a process called transformation. The implanted gene contains information that will provide the organism with a new characteristic that it does not already have. Recombinant DNA technology (rDNA) involves the fol­lowing steps:
1. Generating DNA fragments or isolating genes of
interest,
2. DNA fragments are cut and joined to vector DNA
molecules,
3. Introducing vectors containing foreign DNA into host
cells so that they can multiply, and
4. Choosing the recipient cell clone(s) that have taken up
the recombinant DNA molecule.
There are several enzymes used in rDNA technology. Enzymes, such as nucleases (Endonucleases, Exonucleases) S1 nucleases, and DNases are used for cleaving (cutting) DNA; DNA ligases are enzymes that are used to join DNA fragments; DNA polymerase I, Terminal transferase, and reverse transcriptase are used for amplification of DNA or converting mRNA to DNA; alkaline phosphatase and kinase are used to modify the ends of DNA molecule mak­ing them suitable for cloning; RNases are used to degrade RNA. Methylases and calf intestinal phosphatase are some other DNA-modifying enzymes used for the manipulation of DNA fragments.
The separation of specific DNA fragments from the entire genomic DNA is one of the most significant chal­lenges for rDNA experiment. Normally, either DNA frag­mentation or the synthesis of a new DNA molecule is used for the experiment. Mechanical shearing is a technique for fragmenting DNA molecules. Another advanced method for generating DNA fragments is to use restriction endonu­cleases. Other methods for producing DNA fragments for cloning include complementary DNA (cDNA) synthesis utilizing mRNA as a template, followed by PCR-based amplification of the target gene, i.e. cDNA.

18.3.1 Restriction Endonuclease

Restriction enzymes are bacterial enzymes that cut (cleave) DNA at specified locations. Werner Arber revealed that some enzymes defend the Escherichia coli (E. coli) bacte­rium from invading viral DNA by cutting and destroying it. Restriction enzymes (REs) are enzymes that prevent viral reproduction. REs recognize certain palindromic sequences in double-stranded DNA that are four to six nucleotides long and then cut both strands at specific locations. These are known as recognition sequences. Type I REs are crucial for bacterial function but do not break DNA at specific points. Type II REs require very specific locations for DNA breakage and are hence incredibly helpful tools in molecu­lar biology. These enzymes make it possible to clone and purify particular DNA segments. The approximately 500 known REs are frequently obtained from different bacte­rial strains. Most REs cleave recognition sequences on both
18.3 Genetic Engineering (Recombinant DNA Technology) 363
strands of DNA one or two base pairs distant from the center. As a result, double-stranded DNA has short, single­stranded ends known as cohesive ends/sticky ends. Sticky­end DNA fragments can easily link with other DNA pieces. Adaptors can be used to connect the blunt ends. Adaptors are short, chemically synthesized double strands of DNA that may be used to connect the ends of two DNA mole­cules with differing sequences [94].
DNA Ligases: To reconnect the sliced DNA fragments,
DNA ligases are utilized. By catalyzing the formation of a phosphodiester bond between the 3’ hydroxyl termini of nucleotides and the 5’ phosphate group, DNA ligase joins the DNA fragments [95]. The action of ligases is not dependent on DNA sequence and will join blunt­end termini as well as ends with cohesive overhanging ends.
DNA Polymerases: All DNA Polymerases can catalyze
the addition of nucleotides to the 3’-OH ends of a primer based in a template-directed manner and thus synthesiz­ing the new DNA molecules. E. coli DNA Polymerase I, T4 DNA polymerase, Taq DNA polymerase, reverse tran­scriptase, and other DNA polymerases have been char­acterized and are commercially accessible.

18.3.2 Vectors as Carriers of Transgene

A vector is a DNA molecule that carries foreign genetic material into a different cell. A chimera is a vector that con­tains a foreign gene and is known as recombinant DNA. A vector must contain (i) an ori site (Origin of replication), (ii) multiple cloning site with RE sites and the ability to insert foreign DNA into the vector, and (iii) the vector typi­cally carries selectable markers, such as antibiotic resist­ance (e.g. tetracycline), allowing positive transformed cells to be selected. Other desirable features that can be present in a suitable cloning vector may be (i) vir genes for plant transformation, (ii) lacZ fragment for complementation and blue-white selection, (iii) integrase sites for chromo­somal insertion, and (iv) to aid the purification of recombi­nant proteins after expression, reporter genes surround the numerous cloning sites. Plasmids and bacteriophages are the two most often employed forms of vectors.
A plasmid is a kind of extrachromosomal DNA that is circular, double-stranded, and self-replicating. Plasmids naturally give antibiotic resistance to the host bacterium. They can take 6–10 kb fragments of DNA and reproduce bacterial DNA independently. Plasmids are classified into two types: conjugative and nonconjugative. Transfer genes (tra) and mobilizing genes (mob) are found in conjugative plasmids but not in nonconjugative plasmids. If the mob
gene is intact, nonconjugative plasmids can be mobilized by another conjugative plasmid present in the same cell.
Bacteriophages, sometimes known as phages, are viruses that attack and replicate inside bacteria. The unnecessary phage genome which is one-third may be replaced by for­eign DNA. These viral vectors may transport up to 23 kb of DNA or RNA and contain viral promoters that allow the target gene to be translated into the host cell. Phage λ and phage M
are two regularly used phages. Vectors are fur-
13
ther subdivided into cloning and expression vectors based on the purpose and stage of genetic engineering in which they are utilized [96].
Categories of Vectors by Function
1. Cloning Vectors
The term “cloning vectors” refers to a class of vectors that are used to replicate DNA fragments in an appro­priate host. Due to the Ori (origin of replication site) that a vector offers, it is utilized. Most cloning vectors have synthetic multiple cloning sites, which contain numerous restriction sites, in place of their natural restriction sites to boost efficiency. Integrase sites (for chromosomal insertion), vir genes (for plant transfor­mation), and lacZa segment (for complementation) are additional characteristics that can be added to vec­tors through engineering. A wide variety of cloning vectors are available for microbial, plant and animal genetic engineering applications.
2. Transcription Vectors
For any vector, transcription is a necessary element. Stable transcription, which is dependent on vector pro­moters, is required for the stable expression of an inserted gene. Vectors for transcription are only meant to be duplicated or amplified, not translated or expressed.
3. Expression Vectors
A vector is referred to be an expression vector when it is created to express, or produce, the protein that the DNA insert specifies. Vectors essentially have specific promoter sequences and terminators to define the expression cassette. Additionally, they may have fea­tures like His-Tag, GST-Tag, and reporter genes to facil­itate the purification of recombinant proteins after expression and production.
4. Shuttle Vectors
Shuttle vectors are plasmids that can spread genes across two different species. As a result, they have two replication origins, one for each host species, as well as the replication genes that are not provided by the host cells. The recombinant DNA technology is used to con­struct these vectors.
364 18 Medicinal Plant Biotechnology

18.3.3 Methods of Gene Transfer

18.3.3.1 Direct Gene Transfer Methods
When foreign DNA is inserted directly into the plant’s genome, it is referred to as a “direct transfer of gene.” The introduction of naked DNA into plant cells is the founda­tion of direct DNA transfer techniques.
Electroporation: Electric shocks can stimulate cellular
absorption of foreign DNA from a suspended solution via holes created in the cell membrane by brief electric pulses. It is a simple and rapid way of introducing genes into the cells of numerous species. Plant protoplasts are suspended using this approach in an appropriate ionic solution containing linearized recombinant plasmid DNA. After that, this combination is subjected to either high-voltage short pulses or low-voltage long pulses for the required number of cycles. It is believed that the electrical pulses cause the plasma membrane to tempo­rarily open holes, which allow the DNA molecules to be integrated. Plants and cell colonies are then grown from treated protoplasts. This process, which involves intro­ducing DNA into plant cells by creating tiny holes in the membrane, is known as electroporation.
Microprojectile Bombardment/Gene Gun
Sanford (1987) gave the microprojectile bombardment technique its original name, biolistics. Ballistics and biol­ogy are combined to create biolistics. The target DNA is covered in a carrier particle and then delivered into the tis­sue by firing the gene gun. This is the most general method of transferring DNA into plant cells. The DNA of interest is coated on to the tungsten or gold particles that range in diameter from 1 to 5 m. The DNA-coated particles are propelled into the target cell through a barrel at 430 m s
1
using compressed helium gas. Each DNA transfer event requires about 50 g of tungsten. The carrier particles are positioned in the particle acceleration device on a support film. The support film is accelerated by gas pressure and then halted by a protective mesh. The carrier particles con­tact the target tissue in a petri dish below the biolistic as they travel through the mesh. The carrier particles enter the mesh and make contact with the target. Below the biolistic device is tissue mounted in a petri dish. When there is a modest penetration number of bullets (1–5 per cell), the target cell has a high chance of surviving. The effectiveness of a gene gun depends on several variables, including the chamber vacuum level, the range of particle sizes, and the shot distance. The quantity of DNA per par­ticle, the kind of explant, the physiological circumstances, the type of gas, and the pressure are other important con­siderations. Important crop plants such as maize, rice, and wheat have now been modified using this technique.
Microinjection
The desired DNA is mechanically inserted into a target cell by a direct physical technique called microinjection. The target cell could have been identified from meristems, cal­lus, intact cells, protoplasts, embryos, etc. Microinjection is a technique used to manipulate chromosomes and transfer cellular organelles.
Microinjection is the act of inserting a cannula under a microscope and introducing DNA straight into the cell or even into the cell nucleus. Two pipette-equipped microma­nipulators and a microcapillary needle (0.5–5 m in diam­eter) are used to hold the target cell in place. The injected DNA is subsequently integrated into the plant’s genome using the plant’s own DNA repair mechanism. The key benefit is that no marker gene is required to identify suc­cessful transformation.
The recipient cells are kept immobile in agarose embed­ding and supported by a suction-holding pipette while the gene transfer is being performed. After the microinjection procedure is finished, the altered cell is cultivated and cul­tured to become a transgenic plant. This method has been used to create transgenic tobacco and Brassica napus. The main drawbacks of microinjection are that it requires spe­cialized training, is costly, and takes long time.
Transformation: The process of introducing foreign DNA
into competent bacterial cells is known as transforma­tion. The uptake of plasmid DNA by E. coli is carried out in the presence of 0 to 5 °C ice-cold CaCl quent heat shock (37–45 °C for 90 seconds). CaCl
and a subse-
2
alters
2
the permeability of the bacterial cell membrane and makes the cell more permeable to take up exogenous DNA. The transformational efficiency, or the proportion of transformed cells, is high (one cell per 1000 cells).
Conjugation: During conjugation, single-stranded DNA is
transferred from the donor to the recipient cell by means of cytoplasmic bridges formed when two living bacteria (a donor and a recipient) unite.
Silicon Carbide Method: This technique transfers genes
using organic fibers, such as silicon carbide. These fibers aid in the entry of foreign DNA into plant tissue when combined with plasmid DNA and plant tissue or cells.
18.3.3.2 Indirect Gene Transfer Methods
Agrobacterium-mediated Gene Transfer Bacteria are used as a
vector in the indirect way of genetic transformation to transfer the gene construct into the target cell. Agrobacterium is used in this procedure. Agrobacterium tumefaciens bacteria are home to the Ti plasmid (tumor-inducing), which consists of transfer DNA (T-DNA) and other genes required for T-DNA integration into the host genome. Plants that have been injured generate sap that is rich in
18.3 Genetic Engineering (Recombinant DNA Technology) 365
phenolic chemicals, which act as chemical attractants for agrobacteria and boost the expression of vir genes. It causes Agrobacterium infection of the plant, insertion of the T-DNA region at an undetermined location in the host genome, and plant cell proliferation, which leads to crown gall development. Agrobacterium rhizogens, which causes plants to develop hairy roots, is a different species that is frequently utilized. It possesses a root-inducing plasmid, also known as the Ri plasmid. Numerous dicots and some monocots are susceptible to infection by the genus Agrobacterium, which has a broad range of hosts [97–100].
Structure of Ti Plasmid: The Ti plasmid comprises genes
for T-DNA integration, tumor induction, and the pro­duction of plant hormones and opines.
Origin of Replication: This region is in charge of Ti plas-
mid replication independent of the bacterial cell.
Virulence Region: This area comprises vir genes, the
products of which facilitate the processing and transmis­sion of T-DNA from bacteria to plant cells. Plants emit phenolic compounds like acetosyringone in reaction to damage, which in turn induces their expression.
T-DNA Region: It is a section of the Ti plasmid that con-
tains genes from tumor induction. On both sides, it is bordered by 25 bp direct repeat sequences. These repeti­tions are referred to as the Left border (LB) and Right border (RB). This area contains the genes iaaM and iaaH, which are responsible for the synthesis of indole acetic acid (an auxin), ipt, which is responsible for the manufacture of an enzyme isopentenyl adenine (a cyto­kinin), and tml, which is another gene implicated in tumor development. Opine biosynthesis genes are responsible for the production of opines. All of these genes cause tissue expansion in plant cells, which leads to cancer development.
Region of Opine Catabolism: It also comprises numer-
ous additional genes involved in opiate metabolism. During infection, this portion of the plasmid is not trans­mitted to plant cells.
Use of Ti Plasmid in Genetic Transformation: For use
as a vector in genetic transformation, the majority of the T-DNA region of the bacterial plasmid is replaced with the gene of interest, but the left and right border sequences are left alone. The T-DNA region is specified by its boundaries rather than its sequence, which allows it to be inserted into the host plant genome.

18.3.4 Applications of Genetic Engineering

Agriculture: The most well-known use of genetic engineer-
ing is in agriculture, where researchers have employed modern technology to improve selective breeding in order
to improve the qualities of future crop generations. Classic examples include the development of insect-resistant cot­ton crops, drought-resistant varieties of crop plants, and “biofortified” food crops with improved nutritional value like Golden Rice and Multivitamin Corn. Biofortified foods, such as Golden Rice, that contain genes for increased β-carotene content, a precursor of vitamin A, have played an essential role in addressing vitamin A insufficiency in developing countries. Over the years, sev­eral biofortified varieties of pulses, cereals, vegetables, oil­seeds, and fruits have been developed. Second-generation sophisticated gene editing technologies, such as CRISPR/ Cas9, which permits precise genome changes, have been widely employed over the last decade to modify model plant genomes as well as crop species for yield enhance­ment and biotic and abiotic stress management. Metabolic engineering of plants is yet another facet to modify endog­enous pathways of plants in order to increase the produc­tion of desired metabolites such as alkaloids, terpenoids, or specific valuable metabolites which can be of use in medicine, industry, or increase the innate plant defense. Metabolic engineering of volatile organic compounds can significantly improve the natural plant defense and serve as an alternate pest management strategy.
Environmental Management: For bioremediation, also
known as phytoremediation, genetically engineered plants have been developed. A method for removing or neutralizing environmental toxins, heavy metals and metalloids is known as phytoremediation. It can be accomplished by either breeding or engineering plants with improved or novel capabilities or by utilizing the inherent properties of plants in environmental manage­ment regimes. Genetic engineering can be employed to strengthen the phytoremediation capacity of plants. Plants, for example might be genetically engineered to behave as heavy metal magnets in soil and water or to generate more enzymes that can biodegrade materials and harmful contaminants. Effective approaches include exploiting the genes involved in metal uptake, transloca­tion, reduction, and vacuolar sequestration. Genetically modified versions of plants can be designed to enhance their ability to reduce indoor air pollution.
Biopharmaceuticals: Genetic engineering, for instance,
is helpful in drug discovery for the synthesis of novel therapeutic agents as well as the invention and improve­ment of novel techniques to consistently generate those molecules. Plants can be genetically engineered to gen­erate pharmacologically active proteins such as antibod­ies, vaccines, hormones, cytokines, and a range of medicinal medicines. This domain is popularly known as “Biopharming” as it turns plants into biofactories to produce inexpensive and ingestible medicines.
366 18 Medicinal Plant Biotechnology

18.4 Conclusion

Finding new products of medicinal importance from plants is a very prominent area of research and a valuable resource that further needs much exploration. Many plants, includ­ing wild species, have recently been identified and validated as valuable sources of natural chemicals for pharmacy and medicine. Recent advances in molecular biology and genetic engineering of plant cell cultures suggest that these systems can be transformed into substantial secondary metabolite sources. The transgenic plants can be of significant use to produce protein at an uninterrupted pace. In-vitro propaga­tion is a highly advanced and commercialized field world­wide from an applied perspective. Every year, a huge number of laboratories create several plants, mostly those that are vegetatively propagated, including flowers, grapes, orna­mentals, fruit trees, and rootstocks. Furthermore, the emer­gence of advanced gene editing technologies has revolutionized the field of medicinal plant biotechnology. Developing sustainable agriculture technologies is crucial for ensuring food security and developing economies.

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