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xii 
Preeti Sharma
Department of Floriculture and Landscaping Architecture, Dr. Y.S. Parmar University of Horticulture and Forestry, Neri, Hamirpur, Himachal Pradesh, India
Kuldipika Sharma
Department of Forest Products, Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Nauni, Solan, Himachal Pradesh, India
Shakshi Sharma
Department of Geriatrics, Reynolds Institute of Aging, University of Arkansas for Medical Sciences, Little Rock, United States
Yash Pal Sharma
Department of Pharmaceutical Biology, Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur, Malaysia
Sanjula Sharma
Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab, India
Anchal Sharma
Environmental Technology Division, CSIR-Institute of Himalayan Bioresource Technology, Palampur, Himachal Pradesh, India
Nunavath Raja Shekhar
JSS College of Pharmacy, Ooty, Tamil Nadu, India
Soibam Khogen Singh
Krishi Vigyan Kendra, ICAR-Research Complex for NEH Region, Manipur Centre, Ukhrul, Manipur, India
Kanchan Singh
Department of Pharmaceutics, Faculty of Pharmaceutical Sciences, PES University, Bangalore, Karnataka, India
Nilay Solanki
Department of Pharmacology, Ramanbhai Patel College of Pharmacy, CHARUSAT Campus, Changa, Gujarat, India
Shweta Suri
School of Health Sciences and Technology, University of Petroleum and Energy Studies (UPES), Dehradun, Uttarakhand, India
Tamanna
Department of Forest Products, Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Nauni, Solan, Himachal Pradesh, India
Saad Tayyab
Department of Pharmaceutical Chemistry, Faculty of Pharmaceutical Sciences, UCSI University, Kuala Lumpur, Malaysia
Meenakshi Thakur
Department of Basic Sciences, College of Horticulture and Forestry, Dr. Yashwant Singh Parmar University of Horticulture and Forestry, Neri, Hamirpur, Himachal Pradesh, India
Ricardo Salomon Torres
Universidad Estatal de Sonora, Carretera, San Luis Río Colorado, Sonora, México
Gusheinzed Waikhom1
College of Fisheries, Central Agricultural University (Imphal), Lembucherra, Agartala, Tripura, India
Ruchi Yadav
Department of Pharmacology, Sardar Patel College of Pharmacy, Vadtal Bakrol Road, Bakrol, Gujarat, India
Bancha Yingngam
Department of Pharmaceutical Chemistry and T echnology, Faculty of Pharmaceutical Sciences, Ubon Ratchathani University, Thailand

Abbreviations

AADT amino acid deprivation therapy ABS access and benefit sharing
ABTS 2,2′-azinobis
ACL antioxidant capacity of lipid ACN anthocyanins ACTs artemisinin-based combination therapies ACW antioxidant capacity of water AD Alzheimer’s disease ADMET absorption, distribution, metabolism, excretion, and toxicity AFLPs amplified fragment length polymorphisms AI artificial intelligence AID accession ID AJ adherens junctions AKT protein kinase B ALL acute lymphoblastic leukemia ALP alkaline phosphatase ALT alanine transaminase AML acute myeloid leukemia AMPs antimicrobial peptides AP apigenin APD antimicrobial peptide database APP amyloid precursor protein AR androgenic receptor AraC cytosine arabinoside AST aspartate transaminase
Aβ amyloid-beta
BBB blood–brain barrier
BDNF/NE brain-derived neurotrophic factor/norepinephrine
BGC biosynthetic gene cluster BHL Biodiversity Heritage Library BHT butylated hydroxytoluene BMD bone mineral density BMM bone marrow macrophage BRENDA BRaunschweig ENzyme DAtabase C3G cyanidin-3-glucoside CAC colitis associated cancer CAN central nervous system CAS chemical abstracts service
xiv 
Cath cathepsins CBD convention on biological diversity CBOL Consortium for the Barcode of Life CC cyanidin chloride CE capillary electrophoresis CETSA cellular thermal shift assay ChEMBL Ch European Molecular Biology Laboratory ChemSpider database of chemicals CLL chronic lymphocytic leukemia CMNPD Comprehensive Marine Natural Products Database CNS central nervous system COVID coronavirus disease CP cyclophosphamide CPs cysteine proteases CRC colorectal cancer CSD Cambridge Structural Database CVD cardiovascular disease D3R delphinidin-3-rutinoside DARTS drug affinity responsive target stability DBD DNA binding domain DDS drug delivery system DGGE denaturing gradient gel electrophoresis DHT dihydrotestosterone DM diabetes mellitus DMS dorso-median sinus DMSO dimethyl sulfoxide DNP dictionary of natural products DOX doxorubicin DPPH 1,1-diphenyl-2-picrylhydrazyl DSCG crude phlorotannins DSS dextran sulfate sodium DTH delayed-type hypersensitivity EAAE enzyme-assisted aqueous extraction EAE enzyme-assisted extraction EBOV Ebola virus eEF1A elongation factor 1 eEF1A2 eukaryotic elongation factor 1 alpha 2 ELISAs enzyme-linked immunosorbent assays EO essential oil ER estrogen receptor ERE estrogen response element ERK extracellular signal-regulated kinase ESI electrospray ionization EtOAc ethyl acetate
 xv
FCC Fufangkushen colon-coated capsule FGF fibroblast growth factor FOX2 cyclooxygenase 2 FPIC free, prior, and informed consent FRAP ferric reducing antioxidant power FT fosfomycin trometamol FTIR Fourier transform infrared spectroscopy FUNGIDB fungi database GAGs glycosaminoglycans GC gas chromatography GCMS gas chromatography-mass spectrometry GFC gel filtration chromatography (GFC) GLP-1 glucagon-like peptide 1 GLUT4 glucose transporter type 4 GNPS global natural products social molecular networking GPCR G protein-coupled receptor GPER G protein-coupled estrogen receptor GPs glycoproteins GSH glutathione GT glycosyltransferase HA humoral antibodies HAAs host-acting antivirals HBV hepatitis B virus hCMV human cytomegalovirus HD Huntington's disease HF hollow fiber HIV-1 human immunodeficiency virus type-1 HNM 1-hydroxy-1-norresistomycin HPLC high-performance liquid chromatography HRT hormone replacement therapy HSV herpes simplex virus HTS high-throughput screening IAP intestinal alkaline phosphatase IBD inflammatory bowel disease ICBG International Cooperative Biodiversity Groups IECs intestinal epithelial cells IFN interferon IGF-1 insulin growth factor-1 IHR Indian Himalayan Region IL interleukin IMPPAT Indian medicinal plants, phytochemistry and therapeutics IPR intellectual property rights ISSRs intersimple sequence repeats ITS internal transcribed spacer
xvi 
IUCN International Union for the Conservation of Nature JNK Jun N-terminal kinase KF kahalalide F LAMP loop-mediated isothermal amplification LMOs living modified organisms LPS lipopolysaccharides MAbs monoclonal antibodies MAE microwave-assisted extraction MAP mitogen-activated protein MAPK mitogen-activated protein kinase MARV Marburg virus MD molecular distillation MDR multidrug resistant MEEP macerated ethanolic extract of Indian propolis MF membrane filtration (MF) MIC minimal inhibitory concentrations MM multiple myeloma MMC mitomycin C MMPs matrix metalloproteinases MNPD marine natural products database MRSA methicillin-resistant Staphylococcus aureus MS mass spectrometry MSCs mesenchymal stem cells MSSA methicillin susceptible S. aureus NA nutrient agar NADPH nicotinamide adenine dinucleotide phosphate NAFLD nonalcoholic fatty liver disease NAP network annotation propagation NBT Nitroblue Tetrazolium Test NCBI National Centre for Biotechnology Information NCCs novel chemical compounds ND neurodegenerative disease NDDS nanodrug delivery systems NEI-MPDB North East India Medical Plants Database NF-B nucleus kappa B NMR nuclear magnetic resonance NP natural products NPACT natural products activity and compound tracker NPASS Natural Product Activity and Species Source database NPAtlas natural products atlas NPC1 Niemann-Pick C1 NPOT nematic protein organization technique NPs natural products NRPS nonribosomal peptide synthase
 xvii
OC osteocalcin OCC occludin OPG osteoprotegerin OPN osteopontin OSADHI Online Structural and Analytics based Database for Herbs of India PBMCs peripheral blood mononuclear cells PC partition chromatography PCL photochemiluminescence PCR polymerase chain reaction PD Parkinson’s disease PDA potato dextrose agar PDB protein data bank PEFE pulsed electric field extraction PHA phytohemagglutinin PHAs polyhydroxyalkanoates PI3K phosphoinositide 3-kinase PIC prior informed consent PICP carboxy (C-) terminal propeptide PINP amino (N-) terminal propeptide PKS polyketide synthase PL piperlongumine PLE pressurized liquid extraction PMA phorbol myristate acetate QS quorum sensing QSAR quantitative structure–activity relationship RANKL receptor activator of NF-Kb RAPD randomly amplified polymorphic DNA RC red clover Rf retention factor RFLP restriction fragment length polymorphism RNAi RNA interference ROS reactive oxygen species RT retention time S6K S6 kinase SAR structure–activity relationship SARS-CoV-2 severe acute respiratory syndrome coronavirus 2 SCARs sequence characterized amplified regions SCFAs short-chain fatty acids SCFE supercritical fluid extraction SEC size exclusion chromatography SEMD secondary metabolite database SHR self-help group shRNA short hairpin RNA siRNA small interfering RNA
xviii 
SLS sodium lauryl sulfate SME Salvia miltiorrhiza SMs secondary metabolites SN sinomenine SOD superoxide dismutase SPERM selective phytoestrogen receptor modulators SPI soy protein isolate SRBC sheep red blood cells SSF solid-state fermentation STZ streptozotocin TCM traditional Chinese medicine TEK traditional environmental knowledge TGF transforming growth factor THIQ tetrahydroisoquinoline TJ tight junctions TJP tight junction protein TLC thin-layer chromatography TNF-α tumor necrosis factor-alpha TNP trinitrophenyl TOXNET The Toxicology Data Network TPP thermal proteome profiling TRAP tartrate-resistant acid phosphate T-RFLP terminal restriction fragment length polymorphism TrxR thioredoxin reductase TSA tryptic soy agar UAE ultrasound-assisted extraction (UAE) UC ulcerative colitis UTI urinary tract infections VISA intermediate resistance to vancomycin WT wortmannin YMA yeast mannitol agar ZO zonula occludens

Preface

The book, Natural Products in Drug Discovery: Benefits, Challenges, and Opportunities combines the potential of traditional medicine with the modern techniques for using products derived from natural sources such as plants, microbes, and marine sources as the basis for drug development. Natural products are rich in bioactive compounds which can be explored for drug development. This book, therefore, will serve as a useful reference for biochemists, phytochemists, pharma R&D professionals, students, and researchers working in the field of drug discovery from natural sources.
Bioactive compounds present in natural products (including galantamine, elliptinium, and huperzine from plants; daptomycin from microbes; and citarabine, cryptophycins, bryostatin-1 from marine organisms) are the main components of medicines. They possess various activities such as antimicrobial, anticancer, anti-inammatory, antiviral, anti­diabetic, hepatoprotection, immunomodulatory, neuroprotection, etc., and exhibit a great variability in their chemical structures. Natural products, their semisynthetic derivatives, and synthetic compounds inspired by natural products now form the majority of drugs in use for humans and animals. This book covers the various aspects of drug discovery from natural products derived from plants, microorganisms, and marine organisms. The main attraction of the book includes the information on bioactive potential of these natural
products such as antimicrobial, immunomodulatory, anticancerous, anti-inammatory,
hepatoprotective, antiviral, etc., and their usage in drug development. In this book, recent
techniques used for the isolation and identication of bioactive ingredients from natural sources have also been covered. It reviews the latest developments in the eld of genomics,
transcriptomics, proteomics, and metabolomics for harnessing these natural products for commercial applications. Current status of bioprospection and commercialization of natural products-based drugs has also been reviewed.
Novel drug development is a complex, labor intensive, and costly process. For novel
drug discovery new chemical entities (NCEs) are identied which possess the requisite
quality of druggability and medicinal chemistry . These NCEs can be synthesized chemically or isolated from natural products such as plants, fungi, bacteria, and marine sources. Traditional knowledge can also be utilized for the selection of the sources of NCEs which can be used for further investigations thereby facilitating drug discovery. Therefore, the aim of the book is to review recent developments in natural products-based drug discovery .
CHAPTER 1

Natural Products as Drug Candidates

TOOBA MAHBOOB1, MOGANA SUNDARI RAJAGOPAL1, and SAAD TAYYAB
1

2

2,*
*Corresponding author
ABSTRACT
Growing infectious and noninfectious diseases are a major threat to human health and well-being. The treatment of these diseases with higher efficacy and lesser side effects is considered a gigantic challenge. Many diseases such as coronavirus-2019, human
immunodeficiency virus infection/acquired immunodeficiency syndrome, hepatitis, Ebola
virus disease, influenza, malaria, hypertension, diabetes, and cancer are associated with potential mortalities and morbidities worldwide despite the development of drugs for their treatment and management. The urgent need to find novel drugs, particularly from natural products is warranted. This chapter deals with an array of natural products from plant and microbial sources, the importance of analytical techniques, and natural products as a guide in drug design and synthesis as promising drug candidates.

1.1 INTRODUCTION

Natural products are chemical entities derived from living organisms. They have been the most promising source of potential drug candidates. Nonetheless, natural products isolated from both plants and microbes continue to have fascinating and unique structural diversity and complexity as compared to synthetic drug candidates (Dias et al., 2012). As less than 15% of the global biodiversity has been assessed for biological applications, a lot of lead compounds present in natural products anticipated their discoveries as potential drug leads. Natural products, obtained from plants and microbes, are the leading originator of drugs against many fatal diseases including cancer, diabetes, and microbial infections. Traditional medicines have been dominated by modern medicine as the mode of medical care for human diseases. However, the use of traditional medicinal plants has increased again over the last few years. In developed countries like the United Kingdom, Germany, France, and so on prescription drugs are based on many medicinal plant extracts. Interestingly, about
2 
bc
one-third of the Food and Drug Administration (FDA)-approved drugs have commenced from natural products and their derivatives (Thomford et al., 2018). The major sources of bioactive natural products are plants which cover about 80% of total known bioactive compounds, whereas 20% of them are isolated from marine organisms like corals, snails, sponges, and tunicates as well as from bacteria and fungi (Thirumurugan et al., 2018).

1.2 AN ARRAY OF NATURAL PRODUCTS

1.2.1 PLANT-DERIVED NATURAL PRODUCTS


Medicinal plants have been utilized as a vital source of therapeutics for millions of years. The urge to find therapeutics from plant-derived natural products is still in progress. Though natural product-derived therapeutics were related to some intrinsic factors, the focus of pharmaceutical industries shifted from natural product-derived therapeutics toward laboratory-synthesized therapeutics (Anulika et al., 2016). Consequently , there has been a limited supply of effective therapeutics in the market because the results obtained from laboratory-based therapeutics are far behind in meeting the expectations of new therapies. These circumstances captured the attention of medical scientists in the use of natural product-based therapies again despite their great intricacy . The Austrian Drugs from Nature Targeting Inflammation program focuses on the identification and characterization of natural products possessing anti-inflammatory action with the help of a combination of computational techniques, ethnopharmacological uses, and phytochemical composition (Atanasov et al., 2015). Many secondary metabolites have been isolated from traditional plants and are known to exhibit pharmacological properties mainly antimicrobial activities (Table 1.1) and antitumor activities (Table 1.2).

The existence of medicinal plants dates back to 2600
when first written records on medicinal plants were reported in Mesopotamia, containing around 100 plant-derived medicines. The second oldest plant-derived medicines were reported in Egypt in 2900 bc and considered as most preserved and useful records of the traditional history of about 700 drugs specifically of plant origin. Among others, traditional Chinese medicine has been comprehensively recorded over thousands of years, and the Indian Ayurveda system was reported back to the 1st millennium bc (Atanasov et al., 2015; Anulika et al., 2016).
The information on the restorative utilization of medicinal plants in the Western world is essentially founded by the Greeks and Romans. Lately , Arabs played an important role in the preservation of Greco-Roman knowledge of traditional medicine during the Dark and Middle Ages and supplemented with their therapeutic knowledge and with Chinese and Indian traditional medicinal herbs. During that time, the application of traditional medicine