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DNA, Nuclear Cell Signaling and Neurodegeneration

179

membrane-bound enzyme that transfers electrons from extracellular NADH to extracellular oxygen, making extracellular superoxide.50 NADH oxidase is the major source of superoxide in endothelial cell preparations.50 Amyloidb has NADH oxidase activity and forms extracellular oxygen radicals from extracellular NADH.58 Therefore, NADH generated in the blood of aging patients may enter into a vicious cycle with the generation of oxygen radicals that may damage the vasculature and neurons.

 

 

 

 

Xanthine

 

Visfatin

CD38

 

dehydrogenase

Nam + ATP

NMN

NAD

NADH (10.1)

 

 

 

ATP

 

NADH

 

 

 

 

oxidase

 

 

 

Superoxide

Nicotinamide (Nam) has significant pharmacological activity that is distinct from niacin.59 Nam is a powerful neuroprotective agent that has been in use in clinics to save the lives of thousands of patients with pellagra-induced dementia and brain damage since the 1930s.59 Nam is a precursor for NAD and an inhibitor of poly(ADP-ribose) polymerase (PARP). NAD is primarily involved in the repair of DNA damage in the nucleus since it is a substrate for PARP.59 Of course, NAD and NADH are involved in cellular energy metabolism, especially in mitochondria. The pharmacology of NMN is poorly described. Several compounds similar to NMN, such as cyclic ADP-ribose, ADP-ribose and NaADP (nicotinic acid ADP), are calcium-mobilizing agents.60 NMN can inhibit the enzymatic degradation of NAD by glycohydrolase.61

Visfatin is secreted by visceral adipocytes and macrophages.62 Therefore, damage to the blood-brain barrier by ceramide may attract monocytes/ macrophages that locally produce visfatin. Visfatin induces the formation of TNFa, IL-6 and other cytokines in monocytes and other cells.63 TNFa

stimulates the secretion of adhesion molecules that cause the chemotaxis of white blood cells, such as more monocytes.64–66 Il-6 stimulates the activation of monocytes.64–66 Visfatin then establishes a redox cycle that depends on

extracellular NADH and results in much more damage to the blood-brain barrier. It may be that ceramide and visfatin work together to damage the blood-brain barrier and attract macrophages.67

10.3Oxygen Radicals, Hydrogen Peroxide and Cell Death

Ceramide and visfatin appear to induce the formation of oxygen radicals including peroxynitrite and hydrogen peroxide. Peroxynitrite is charged and does not normally cross cell membranes. It is a powerful protein-nitrating agent that nitrates protein phosphatase type 2A.68 This nitration inhibits the normal

180

Chapter 10

phosphorylation that controls the enzyme. The nitrated enzyme, in endothelial cells, is dysfunctional and causes the blood-brain barrier to leak.

Hydrogen peroxide quickly passes through membranes and within minutes causes DNA to fragment (Figure 10.1). Hydrogen peroxide may form a hydroxyl radical that rapidly breaks DNA. DNA fragmentation occurs through three mechanisms: cleavage of the deoxyribose radical, Criegee rearrangement and peroxide migration. Radical cleavage involves cleavage of a negatively charged phosphate moiety leaving a positively charged deoxyribose radical. Criegee rearrangement involves hydroxide attack of the deoxyribose with elimination of a negatively charged phosphate moiety. Peroxide migration involves elimination of an uncharged phosphate moiety with ring opening of the deoxyribose. Of course, radical oxidation of DNA bases can also occur. DNA peroxidation and cleavage leads to activation of PARP that activates

 

PO

PO

 

 

 

 

 

 

O

O

 

 

B

 

 

B

 

H

.C

HO.

 

radical

DNA cleavage

PO

cleavage

 

 

PO

 

 

 

–OP

 

 

 

 

 

O2

 

PO

 

 

 

O.

O

PO

PO

HOO

PO

Figure 10.1

O

 

O+

B

OP

 

 

B

 

 

 

 

 

HO–

 

 

O

DNA cleavage

 

 

 

Criegee

 

 

 

Rearrangement

 

 

 

 

 

PO

 

H.

 

 

 

O

PO

 

 

 

 

 

B

 

O

 

 

 

 

B

 

O

 

DNA cleavage

migration

 

 

 

 

 

 

O

 

 

 

P

HO

–OP

DNA peroxidation and cleavage by oxygen radicals. B is any DNA base. PO is phosphate in the DNA structure. DNA cleavage occurs through three mechanisms: cleavage of the deoxyribose radical, Criegee rearrangement and peroxide migration.

DNA, Nuclear Cell Signaling and Neurodegeneration

181

DNA repair enzymes.69 PARP uses NAD as an energy source and as a substrate to poly(ADP-ribosylate) itself and several nuclear enzymes. This poly(ADP-ribosylation) alters the activities of many enzymes.

Neuronal DNA is much more than just an archive of genetic information. It is very actively involved in producing proteins for neurotransmitter synthesis, release, reuptake and other neuronal functions. Damage to neuronal DNA very extensively a ects the ability of neurons to function normally, including maintaining neurotransmitters.70

PARP may ADP-ribosylate various transcription factors that regulate gene transcription.71,72 PARP is a component of positive cofactor 1 activity that regulates class II gene transcription.70 When DNA is damaged, PARP is activated, which inhibits class II gene transcription regulated by RNA polymerase II.73 PARP is also important in the action of p53, the tumor suppressor protein. Both PARP and p53 bind to DNA breaks. PARP can form complexes with p53 that may alter the activity of p53.74 Interestingly, p53 is involved in the inhibition of RNA polymerase III dependent gene transcription.75

It is important to recognize that the PARP referred to above is PARP-1. There are several enzymes with PARP activity.76 It is not known if the other enzymes, PARP-2, PARP-3, tankyrase and V-PARP, can fill in for PARP-1 when PARP inhibitors are used. Clearly, in PARP-1 knockout mice, the other PARP enzymes are still functional and can protect DNA and synthesize poly(ADP-ribose). It is also not known if PARP inhibitors are specific for PARP-1 or can inhibit all forms of PARP.

The energetic consequences of DNA damage and PARP activation are

enormous (Figure 10.2). PARP activation rapidly depletes NAD and ATP levels in the cell, leaving the cell depleted of energy sources.69,77 NADPH

depletion also occurs.77 Glutathione oxidizes. Glycolysis, the pentose phosphate pathway and mitochondrial energetics are a ected.

Recent research indicates that the secondary brain injury associated with stroke is induced by inflammatory processes. Nicotinamide can decrease the recruitment of neutrophils to potential sites of inflammation by inhibiting PARP in neutrophils and other cells.78 In fact, nicotinamide has been recommended for the treatment of arthritic patients since the 1940s. It was found in pilot trails that nicotinamide improved joint mobility and decreased the need for anti-inflammatory medication in arthritic cases.79 In the process of inflammation, the genes for intercellular adhesion molecule 1 and collagenase in neutrophils are activated. Neutrophils are recruited to sites of inflammation. Nitric oxide synthase is activated and oxygen radicals, hydrogen peroxide and nitric oxide are released. These reactive species can damage cellular DNA in the area of inflammation, resulting in apoptosis, necrosis and more serious inflammation.80 PARP has a number of functions in inflammation due to its ability to regulate gene expression.80 Inhibition by nicotinamide of PARP leads to decreased expression of these genes and decreases the extent and severity of inflammation. Nicotinamide also decreases the induction of iNOS, thereby decreasing damage to the blood-brain barrier.81

182 Chapter 10

 

 

 

 

 

 

 

 

 

 

 

 

 

Oxidative

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Insult

 

 

 

 

 

 

 

 

 

 

Loss of Mitochondrial function

 

O2

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Lipid Peroxidation

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

O2.-

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Protein oxidation

 

 

 

 

 

 

 

 

SOD

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

DNA PARP DNA

 

 

 

 

 

 

 

 

 

 

GSH peroxidase

 

 

 

 

.

Fe+2

 

 

 

 

 

 

 

 

 

 

 

 

 

H2O2

 

 

 

 

 

 

 

 

H2O

repair

 

 

 

damage

 

 

 

 

 

 

 

 

 

 

 

 

HO

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NAM

 

NAD

 

 

 

 

 

 

 

 

 

 

GSH

 

GSSG

 

 

 

 

 

 

 

 

NAD depletion

GSSG Reductase

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NADP NADPH

 

 

 

 

 

 

 

 

 

 

 

 

NAD kinase

 

 

 

 

 

 

 

 

 

 

 

 

 

 

ATP

NAD

 

 

 

ATP

PPP

 

 

 

Na-AD

 

 

Glycolysis

G-6-P

 

R-5-P

 

 

 

 

 

 

 

 

 

 

2

 

 

 

 

2

 

 

ATP

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

ATP

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

fructose

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Na-MN

 

NMN

 

 

 

 

 

Glucose

 

 

 

ATP

 

1

 

 

 

 

1

 

 

ATP

 

 

 

 

 

 

NAD G-

3-P

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NADH

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NAM

 

 

 

 

 

 

 

 

 

 

 

Na

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NAD NADH

 

 

2ATP

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Lactate

 

 

 

 

Pyruvate

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Figure 10.2 The energetic consequences of DNA damage caused by oxidative stress. PARP is poly(ADP-ribose) polymerase. NAM is nicotinamide. NMN is nicotinamide mononucleotide. Na is niacin. Na-MN is niacin mononucleotide. Na-AD is niacin adenine dinucleotide. 1 is nicotinamide phosphoribosyl transferase, which requires ATP. 2 is NMN adenyl transferase, which requires ATP. PPP is the pentose phosphate pathway. G-6-P is glucose-6-phosphate. R-5-P is ribose-5-phosphate. G-3-P is 3-phosphoglycerate.

DNA damage leads to cell death. A large amount of DNA fragmentation causes rapid necrosis, with cell swelling and rupture, nuclear swelling and rupture and cytoplasmic vacuole formation. A smaller amount of DNA fragmentation causes apoptosis with cell shrinkage, nuclear condensation and fragmentation, large vacuole formation in the cytoplasm and cell fragmentation forming apoptotic bodies.82 Necrosis is a rapid process that does not require energy. Apoptosis is a delayed process that requires ATP. The center of a brain infarction is typically made up of necrotic cell debris.83 The limit area surrounding the core contains necrotic, apoptotic and normal cells.83

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