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resistance testing in clinical isolates is important to decide on appropriate therapy (Chowdhary etal. 2017).
C. Gupta and S. A. Dar

16.6 Guideline Recommendations

IDSA recommends triazoles as the preferred agents for the treatment and prevention of IA, voriconazole is considered as rst-line therapy, and alternatively, other azoles such as posaconazole, itraconazole or isavuconazole may be considered (Patterson etal. 2016). The recommended treatment duration for IA is 6–12weeks depending on the degree and duration of immunosuppression, site of disease, and treatment response. Alternatively, LAMB or Echinocandins may be considered if azoles can­not be considered or contraindicated. Surgical debridement not only helps in the removal of the source but also better penetration of antifungal agents; it may be considered inlocalized infections, such as localized sinus infections, focal CNS lesions, endocarditis, septic arthritis, or osteomyelitis.
Recently, the European Society for Clinical Microbiology and Infectious Diseases, the European Confederation of Medical Mycology, and the European Respiratory Society jointly published guidelines for the management of Aspergillosis disease (Ullmann et al. 2018). These guidelines recommend Isavuconazole or voriconazole as rst-line targeted therapy for IPA and LAMB as an alternative agent, while for extrapulmonary disease, voriconazole is the rst­line therapy. Posaconazole is recommended as primary prophylaxis in neutrope­nic or hematological malignancies or transplant recipients. In cases of hepatic insufciency, LAMB is the preferred choice. In cases of Aspergillus fumigatus with high azole MIC, LAMB is to be considered as rst-line therapy or a combi­nation therapy should be considered. In addition, there are chances of Aspergillus avus having high MIC for LAMB; hence, voriconazole or isavuconazole is to be considered as rst-line therapy. It is suggested to de-escalate from intravenous to oral therapy once the patient is clinically and pharmacokinetically stable. No dened treatment duration is recommended and antifungal therapy continues until clinical response is achieved.
16.7 Treatment ofChronic Pulmonary Aspergillosis (CPA)
Treatment of Aspergilloma or nodules involves surgical resection, wherever feasi­ble. Antifungal therapy is used in chronic cavitary or brosing pulmonary aspergil­losis (CCPA or CFPA) with the goal of therapy to control infection, hemoptysis, and halt the progression of brosis. Oral triazoles are considered the treatment of choice (Ullmann etal. 2018). Sehgal etal. ranked itraconazole as the best oral agent in a network rank analysis; voriconazole and posaconazole are alternatives (Sehgal etal.
2021). There are no data regarding the use of Isavuconazole for CPA.The treatment
duration is long about 6months and may be extended to 9–12months in certain cases; however, patients who deteriorate in the initial 6 months should be
16 Recent Advances intheManagement ofAspergillosis
395
considered treatment failures and switched to alternative agents (Denning etal.
2016; Sehgal etal. 2020). In case of non-tolerance or resistance to triazoles, alterna-
tive intravenous agents such as LAMB or echinocandins can be considered. A strat­egy involving an initial induction course with intravenous agents followed by long-term oral therapy has been tried in a few cases. The treatment is individualized based on factors, such as respiratory disability, tolerability, drug interactions, and affordability.
16.8 Treatment ofAllergic Bronchopulmonary
Aspergillosis (ABPA)
The goal for treatment of Allergic Bronchopulmonary Aspergillosis (ABPA) involves symptom control, preventing or treating exacerbation and preventing inammation and progression to brotic or cavitatory disease. Corticosteroids are the cornerstone of ABPA treatment. Long-term steroid use has adverse effects and around 20–45% of patients become steroid-dependent (Agarwal et al. 2006). Antifungal drugs work by decreasing fungal load, antigenic stimulus and preventing inammatory progression, reducing steroid dependency. The combination of itra­conazole with steroids proved better in reducing ABPA exacerbations than steroid monotherapy alone (Agarwal etal. 2021). Voriconazole has also proven effective compared to steroids in acute-stage ABPA (Agarwal et al. 2018). The data for posaconazole and isavuconazole for the treatment of ABPA are lacking, hence not recommended (Table16.3).
Table 16.3 Summary of the antifungal treatment of Aspergillosis. (Patterson etal. 2016; Ullmann etal. 2018)
Indication Treatment of IA Voriconazole or
Prophylaxis for IAPosaconazole Intermittent high dosing LAMB (twice weekly)
Aspergillus isolates Azole MIC=2mg/mL
Aspergillus isolates Azole MIC >2mg/mL
CPA Itraconazole Voriconazole (alternate therapy)
ABPA Itraconazole Voriconazole (alternate therapy)
Drug
Isavuconazole
LAMB Voriconazole + Echinocandin
LAMB Voriconazole/Posaconazole + Anidulafungin/
Alternative LAMB
Or Itraconazole as salvage therapy
Micafungin 50mg Itraconazole 400mg/day, oral solution
Caspofungin Caspofungin or Micafungin monotherapy
Posaconazole or Isavuconazole Salvage therapy in ABPA, CPA (intolerance, ADE, clinical failure)
396
C. Gupta and S. A. Dar
16.9 Newer Antifungal Agents inPipeline
1. CD101 (Rezafungin), echinocandin, with structural modications, a cyclic
hexapeptide with a choline moiety at the C5 ornithine position provides improved stability, resulting in an enhanced safety prole and extended half-life of approx­imately 130h (Krishnan etal. 2017) (Fig.16.4). The drug is being developed as a weekly intravenous and oral formulation and is currently in Phase III trial ReSPECT (NCT04368559) (Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl etal. 2021).
2. Ibrexafungerp, SCY-078 (Scynexis), a derivative of the natural product enfuma-
fungin, being developed as an oral formulation, structurally different from avail­able echinocandins, a large volume of distribution and is active against echinocandin-resistant Aspergillus spp. (Walker etal. 2011) (Fig.16.4). Currently, this drug is in phase III clinical trial (SCYNERGIA, NCT03672292; FURI, NCT03059992) (Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl etal. 2021).
3. Fosmanogepix (APX001) APX001, an N-phosphonooxymethyl, is a prodrug,
broken down by systemic alkaline phosphatases to the active component, APX001A that specically inhibits the fungal enzyme glycosylphosphatidylino­sitol (GPI) anchored wall transferase (Gwt1), inactivating post-translational modication of GPI anchor proteins, the disruption of GPI-anchored protein
Fig. 16.4 Newer antifungal agents and mechanism of action. (Adapted from Hoenigl etal. 2021)
16 Recent Advances intheManagement ofAspergillosis
397
maturation, and interferes with fungal adhesions (Fig.16.4). Currently, phase III trial of fosmanogepix in the treatment of IA is ongoing (AEGIS, NCT04240886) (Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl etal. 2021).
4. F901318 (F2G) or Olorom belongs to class the orotomides and is a reversible
inhibitor of A. fumigatus dihydroorotate dehydrogenase (DHODH) involved in the denovo pyrimidine biosynthesis pathway (Walker etal. 2011) (Fig. 16.4). The compound is highly pathogen-specic and is currently in phase III of clini­cal trials, (NCT0286178) (Hoenigl etal. 2021).
5. Opelconazole is similar to azole in structure and mechanism of action devel-
oped as an inhaled azole. It is highly lipophilic, available in micronized particles micronized drug particles, resulting in high local concentrations in the lung, slow absorption from the lung into plasma reduced toxicity, and has been devel­oped particularly for pulmonary fungal infections, however, not active against Aspergillus niger (Hoenigl etal. 2021).
6. VT-1598 is triazole metal-binding group substituted with tetrazole, resulting in
more specic inhibition of fungal Cyp 51 enzymes nally targeting ergosterol biosynthesis with clinically signicant reduced drug–drug interactions (Fig.16.4) (Yates etal. 2017). In vitro, studies have demonstrated the potent activity of VT-1598 against Aspergillus fumigatus CYP51A mutants with ele­vated posaconazole and voriconazole MICs; this compound is currently in phase I of clinical trials (Wiederhold etal. 2018).
7. Structurally Modied Amphotericin B (AMB cochleate): An improved deliv-
ery system in the form of AMB cochleate lipid–crystal nanoparticles has been developed to confer stability against degradation by gastrointestinal enzymes (Santangelo etal. 2004). AMB cochleate, a multilayered structure with a solid lipid bilayer with no inner aqueous space and is made up of phosphatidylserine with phospholipid–calcium precipitates (Santangelo et al. 2000). Oral AMB­cochleate has shown good results in animal models and is currently in Phase II clinical trials (NCT02971007 and NCT02629419) (Vahedi-Shahandashti and Lass-Flörl 2020).
Ibrexafungrip and Rezafungin are modications of echinocandins inhibiting fun­gal cell wall synthesis. Fosmanogepix specically inhibits the fungal enzyme GPI anchored wall transferase (Gwt1) disrupting GPI-anchored protein maturation and fungal adhesions. Opelconazole are modications of azoles and inhibit the conver­sion of lanosterol to ergosterol. Olorom is a reversible inhibitor of A. fumigatus DHODH involved in the denovo pyrimidine biosynthesis pathway.

16.10 Conclusion

Aspergillosis is a complex disease with varied clinical manifestations, IA carries a high risk of morbidity and mortality, particularly in immunocompromised patients. The management is more complex with susceptible populations, increasing antifun­gal resistance and potential drug interactions. It is imperative to develop new strate­gies and newer agents for the management of Aspergillus spp. infections.
398
C. Gupta and S. A. Dar

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C. Gupta and S. A. Dar
Drug-Resistance Patterns inOpportunistic Aspergilli: AMolecular Perspective
SoniaKumariShishodia , RamanThakur, PriyaGautam, Saurav, Neha, andJataShankar
Abstract
Mycosis, invasive aspergillosis, caused by pathogenic and opportunistic fungi is
of medical concern. In modern times, the primary factor contributing to the lack
of success in medical treatments is the widespread presence of isolates that
exhibit resistance to existing drugs on a global scale. As perliterature, Aspergillus
infections are widespread, so the drug-resistance mechanism must be carefully
considered. Antifungal resistance is a major health issue, especially for immuno-
compromised people. The resistance mechanism of major Aspergillus species
has been explored at a molecular level and correlated with the cellular level.
Furthermore, several studies have been conducted on the role of biolm forma-
tion and its contribution to the mechanism of drug resistance. The functional
signicance of genes (FKs1, CYP51, ERG11, ERG5, ERG6, ERG25, SSC70,
GANA, TFT1, and ERFD), proteins (HSP, ABC Transporters, RAS, RAM,
NADH, PtaB, and superoxide dismutase), transcriptional factors (CRZ1, SrbA,
SomA, PtaB, Spt20, and UPC2), and others factors (ECM and reactive oxygen
17
S. K. Shishodia (*) University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, India
R. Thakur Department of Medical Laboratory Science, Lovely Professional University, Jalandhar, Punjab, India
P. Gautam · Neha · J. Shankar (*) Genomic Laboratory, Department of Biotechnology and Bioinformatics, Jaypee University of Information Technology, Waknaghat Solan, Himachal Pradesh, India e-mail: jata.shankar@juit.ac.in
Saurav Department of Civil Engineering, Jaypee University of Information Technology, Waknaghat Solan, Himachal Pradesh, India
© The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2024 S. Hameed, P. Vijayaraghavan (eds.), Recent Advances in Human Fungal Diseases, https://doi.org/10.1007/978-981-97-4909-6_17
401
402
S. K. Shishodia et al.
species) from environmental and clinical isolates of Aspergilli, concerning to
antifungal drug interactions, have been documented. This chapter discusses
theresistance pattern, potent antifungal compounds, and potential vaccine candi-
dates to address the global health issue related to Aspergilli.
Keywords
Reactive oxygen species · CYP51 · ERG5 · ERG11 · HSP

17.1 Introduction

Fungal pathogen represents a signicant clinical and industrial relevance, as well as a source of opportunistic infectious agents in individuals with compromised immune systems (Day 2017; Latgé 1999). The Aspergillus genus encompasses around 350 species, with the number of newly discovered species increasing every year. There exists an array of approximately 40 distinct species of Aspergilli, all of which have the potential to induce infections and elicit allergic responses in humans. Certain species of Aspergillus have gained medicinal importance (Kocsubé and Varga 2017; Samson and Varga 2009). Aspergillus species may infect humans with compro- mised immune systems and, less often, healthy people. The most common species is A. fumigatus (67–73%). A. avus follows with 10–16%, while A. terreus accounts for 3–4% and A. niger has the lowest laboratory rate of invasive disease (2.4%) but clinical studies show 4–8.7% of invasive aspergillosis (IA) (Pagano etal. 2001; Posch et al. 2018; Steinbach et al. 2012). As reported earlier, ~ 20% isolates of Aspergillus are resistant to the available antifungals drugs (WHO Fungal Priority Pathogens List to Guide Research 2022). There has been a notable rise in the occur­rence of cancer, viral infections such as HIV, malignancies, organ transplantation, and autoimmune diseases, which subsequently result in secondary fungal diseases (Denning etal. 2013; Zheng and Zhang 2014). The COVID-19 pandemic has added increased cases to ICUs with an estimated overall mortality of 35.5% (Armstrong and Kane 2021). Risk factors for ventilator-associated pneumonia and CAPA include dysregulation in immune system and diffuse alveolar damage in severe SARS-CoV-2 infection or therapy with corticosteroids or anti-interleukin-6 (Paramythiotou etal. 2021; Somers etal. 2021). Despite the increased number of CAPA cases, the number of CAPA cases varied greatly between hospitals and nations, with ICU reported rates ranging from 3% to 33% (Arastehfar etal. 2020).
Aspergillus conidia reside in external environment is less active/dormant. Cell bound and cell-free receptors recognize the cell wall component of conidia/mycelia to initiate the host immune response (Thakur and Shankar 2016a). Aspergillus or drug-resistant isolates cause aspergillosis posing a threat to humans (Shishodia etal. 2019). Furthermore, the emergence of Aspergilli drug resistance has posed a signicant threat to the global Aspergillus threat (Chowdhary etal. 2013; Denning etal. 2013). Moreover, the failure to promptly identify Aspergillus-related infec­tions is a potential hazard for susceptible individuals. Presently, three classes of antifungal drugs are available; polyenes, triazoles, and echinocandin. Antifungal
17 Drug-Resistance Patterns in Opportunistic Aspergilli: A Molecular…
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drugs target cell walls, disrupting ergosterol biosynthesis or β-1, 3-glucan. Multidrug-resistant fungus and intrinsically resistant pathogens pose a greater threat to this, and that is why, researchers are endeavoring to develop new anti-Aspergillus targets and medication to combat infections (Groll and Kolve 2004; Shishodia etal.
2019). Elucidating the genomes/proteomes of many Aspergillus species has helped
us understand their biology and processes. High-throughput methods such as micro­array, RNA-seq, and mass spectrometry can help identify pathogenesis, virulence, and drug-resistance factor (Cerqueira et al. 2014). This book chapter examined drug-resistance mechanisms and molecular factors such as transcriptional factors genes/proteins and signaling cascades. In particular, the current study may help us understand Aspergillus drug-resistance mechanisms at the molecular and cellu­lar level.
17.1.1 Occurrence ofDrug-Resistance among Aspergilli
Although some Aspergillus species are initially tolerant to antifungals, others may develop resistance due to prolonged and inadequate dosing. Rivero-Menendez etal. (2016) conducted a brief overview of azole-based drug resistant in Aspergillus spe­cies. The study found the most azole-resistant isolates in Europe (Rivero-Menendez etal. 2016). The WHO now lists Aspergillus fumigatus among 19 priority fungal pathogens, including Cryptococcus neoformans, Candida auris, and Candida albi- cans in the critical group (Cadena etal. 2021). A. fumigatus azole-resistant strains range from 6.6% to 28% globally,In UK 2.1–20%, Clinical and environmental isolates in the Netherlands, Germany, and France have 10–12% Rivero-Menendez et al. (2016), estimated 10% resistance in Asia, Africa, America, and Australia. In India 32.4% of A. fumigatus isolates from clinical samples have been found (Rivero-Menendez etal. 2016; Shishodia etal. 2019).About 1.75% of these isolates are resistant to azole antifungals. Resistance isolates were lower in India than in Europe, likely due to the limited use of azole fungicides in Asia (Berger etal. 2017; Chowdhary etal. 2013, 2015) Broth microdilution or gradient strip tests are used to assess minimum inhibitory concentration (MIC) values for antifungal drug activity according to EUCAST or CLSI guidelines (Espinel-Ingroff etal. 2013). Recently, the EUCAST provides epidemiological cutoff values (ECOFFs) for the triazoles (Arendrup et al. 2020). In addition, the formation of biolms often confer transient resistance to antifungal drugs (Seidler etal. 2008; Villena etal. 2009; Bruns etal.
2010b; Kaur and Singh 2014; Paul etal. 2017b).
Aspergillus terreus is a prominent etiological agent of aspergillosis in Austria, as well as Houston, Texas (Blum etal. 2008; Lass-Flörl etal. 2007). In India, 6.6% of the aspergillosis cases were attributed to A. terreus isolates in Delhi regions (Chowdhary etal. 2015). A recent report showed that around 8% of A. terreus iso­lates showed MICs ranging from 0.5 to 1mg/L against AmB with no discernible patterns in genotype (Kathuria etal. 2015). A. terreus isolates exhibit inherent resis- tance to AmB (Steinbach etal. 2004a, b). In addition, A. terreus with elevated MICs against AmB was noted (Graybill etal. 2004; Lass-Flörl etal. 2007; Steinbach etal.