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- •Foreword
- •Preface
- •Contents
- •Editors and Contributors
- •About the Editors
- •Contributors
- •1.1 Introduction
- •1.2 Conventional Methods
- •1.2.1 Microscopy
- •1.2.2 Culture
- •1.2.3 Germ Tube Test
- •1.2.5 Carbohydrate Assimilation Test
- •1.2.6 Nitrogen Assimilation Test
- •1.2.7 Carbohydrate Fermentation Test
- •1.2.8 Urease Test
- •1.2.9 Tween 80 Opacity Test
- •1.3 Nonculture-Based Conventional Methods
- •1.3.1 Serological Methods
- •1.3.1.2 ß-d-Glucan
- •1.3.1.3 C. albicans Germ Tube Antibody Assay (CAGTA)
- •1.4 Nucleic Acid-Based Detection
- •1.4.1 Polymerase Chain Reaction (PCR)
- •1.4.3 Peptide Nucleic Acid FISH (PNA-FISH)
- •1.4.4 PCR-Based Innovative Diagnosis
- •1.4.5 FilmArray System
- •1.4.6 Sepsis Flow Chip
- •1.4.7 ePlex System
- •1.4.8 The T2 Candida Assay
- •1.5 Rapid Identification Systems
- •1.5.1 Manual Rapid Identification System
- •1.5.1.1 The API System
- •1.5.1.2 The VITEK System
- •1.5.2 Automatic Rapid Identification System
- •1.5.2.1 MALDI-TOF MS
- •1.5.2.2 The MALDI Sepsityper IVD Kit
- •1.5.2.3 The BioFire FilmArray BCID2 Panel
- •1.5.2.4 The Accelerate Pheno BC Panel
- •1.6 Advanced Diagnostics
- •1.6.2 Biosensor-Based Tests
- •1.6.3 Next-Generation Sequencing (NGS)
- •1.7 Conclusion
- •References
- •2.1 Introduction
- •2.2.1.2 Echinocandins
- •First-Generation Echinocandin
- •Second-Generation Echinocandin
- •2.2.1.3 Other Cell Wall Inhibitors
- •2.2.2.1 Azoles
- •Imidazole
- •Triazole
- •Second-Generation Azole
- •Third-Generation Azole
- •2.2.2.2 Polyenes
- •Other Polyene Under Development
- •2.2.2.3 Allylamines
- •2.2.3 Flucytosine
- •2.3 Conclusion
- •References
- •3.1 Introduction
- •3.2.1 Control Diet
- •3.2.3 Toxification
- •3.2.4 Alternative Treatments
- •3.3.1 Prophylaxis
- •3.3.2 Preemptive Therapies
- •3.3.3 Empirical Therapies
- •3.4 Therapeutic Approach
- •3.4.1 Azoles
- •3.4.2 Echinocandins
- •3.4.3 Polyenes
- •References
- •4.1 Introduction
- •4.3 Eukarya Domain
- •4.4.1 Cryptococcus
- •4.4.2 Aspergillus
- •4.4.3 Mucorales
- •4.4.4 Candida
- •4.5.1 Candida albicans
- •4.5.2 Morphogenesis
- •4.5.3 Pathogenesis
- •4.5.4 Adherence
- •4.5.5 Morphological Switching
- •4.5.6 Invasion
- •4.6 Induced Endocytosis
- •4.7 Active Penetration
- •4.8.2 Biofilm Formation
- •4.8.4.1 Antifungals
- •4.8.4.2 Antifungal Resistance
- •References
- •5.1 Introduction
- •5.2.3.1 Serum
- •5.2.3.2 Low Nitrogen
- •5.2.3.5 Carbon Source
- •5.2.3.6 pH
- •5.2.3.7 N-acetylglucosamine (GlcNAc)
- •5.2.3.8 Quorum Sensing Molecule
- •5.5.5 Surface Colonization Factor1 (SCF1)
- •5.5.6 Other Putative Adhesins
- •5.6.1 Phospholipases
- •5.6.2 Proteinases
- •5.6.3 Hemolysins
- •5.6.4 Lipases
- •5.7 Secreted Cytolytic Peptide: Candidalysin
- •5.5.1 ALS Family
- •5.5.2 HWP Adhesin
- •5.5.3 HYR/IFF Family
- •5.5.4 EPA Family
- •5.9.2 Low Molecular Weight Hsp/Small Heat Shock Proteins
- •5.10.1 Amino Acid/Nitrogen Metabolism
- •5.10.1.1 Amino Acid Sensing Pathway
- •5.12.1.1 Glycolysis
- •5.12.1.2 Gluconeogenesis
- •5.12.1.3 Glyoxylate Cycle
- •5.12.1.4 Fatty Acid Oxidation
- •5.12.3.2 Iron Metabolism
- •5.12.3.3 Candida Iron Transport
- •5.12.3.4 Reductive System
- •5.12.3.5 Siderophore Uptake System
- •5.12.3.6 Haemoglobin-Iron Uptake System
- •5.13.2 Zinc Metabolism
- •References
- •6.1 Introduction
- •6.2 Morphological Switching
- •6.3 Phenotypic Switching
- •6.4 Biofilm Formation
- •6.5 Metabolic Flexibility
- •6.8.1 Hemolysin
- •6.8.2 Phospholipases
- •6.8.3 Proteinase
- •6.8.4 Candidalysin
- •6.12 Conclusion
- •References
- •7.1 Introduction
- •7.2.4 Polymorphism
- •7.2.5.1 Secreted Aspartyl Proteinases
- •7.2.5.2 Phospholipase
- •7.2.6 Calcineurin-Signalling Pathway
- •7.2.7 Ion Homeostasis
- •7.2.7.1 Iron
- •7.2.7.2 Copper
- •7.2.8.1 Capsule
- •7.2.8.2 Melanin
- •7.2.8.3 Heat Shock Proteins
- •7.3 Conclusions
- •References
- •8.1 Introduction
- •8.4.1 ATP-Binding Cassette (ABC) Transporters
- •8.4.2 Major Facilitator Superfamily (MFS) Transporter
- •8.5.1 Biofilm Architecture Among Candida Species
- •References
- •9.1 Introduction
- •References
- •10.1 Introduction
- •10.3 Biofilm
- •10.5 Adherence
- •10.6 Maturation
- •10.8 Dispersion
- •10.11 Animal Models
- •10.18 Photodynamic Therapy
- •References
- •11.1 Introduction
- •11.9 Concluding Remarks
- •References
- •12.1 Introduction
- •12.2 Epidemiology
- •12.3.1 Humoral Response
- •12.3.2 Cellular Immunity
- •12.4 Virulence Factors
- •12.6.1 Fluconazole
- •12.6.2 Polyenes
- •12.6.3 Echinocandins
- •12.7 Drug Resistance
- •12.8 Future Prospects
- •12.9 Conclusions
- •References
- •13.1 Introduction
- •13.4 Translation Research
- •13.4.1 Disease-Oriented Translational Research
- •13.4.2 Lab-Oriented Translational Research
- •13.4.3 Patient-Oriented Translational Research
- •13.5 Conclusion
- •References
- •14.1 Introduction
- •14.2.3 Cutaneous Aspergillosis
- •14.2.4 Ocular Aspergillosis
- •14.2.5 Aspergillus Endocarditis
- •14.2.6 Aspergillus Osteomyelitis
- •14.2.7 Sinus Aspergillosis
- •14.3.2 Histopathology
- •14.3.3 Serological
- •14.3.4 Breath Testing
- •14.3.5 Monoclonal Antibody (mAbs)-Mediated Methods
- •14.4.1 Conventional Therapeutics
- •14.4.1.1 Azoles
- •14.4.1.2 Polyenes
- •14.4.1.3 Echinocandins
- •14.4.1.4 Fluoropyrimidines
- •14.5 Nonconventional Therapeutics
- •14.5.1 Vaccine
- •14.5.2 Monoclonal Antibodies (mAbs)
- •14.5.3 Nanotechnology-Based Therapeutics
- •14.5.4 Immune Therapy
- •14.5.5 Combination Therapy
- •14.8 Conclusion
- •References
- •15: Aspergillus Therapeutics: Future Agents
- •15.1 Introduction
- •15.2.1 Fosmanogepix
- •15.2.2 Ibrexafungerp
- •15.2.3 Olorofim
- •15.2.4 Opelconazole
- •15.2.5 Rezafungin
- •15.2.6 MGCD290
- •15.2.7 Tetrazoles (VT-1129/VT-1161/VT-1598)
- •15.2.8 Nikkomycin Z
- •15.2.9 VL-2397
- •15.2.10 T-2307/ATI-2307
- •15.2.11 Encochleated Amphotericin-B
- •15.2.12 SUBA-Itraconazole
- •15.2.13 Immunotherapy
- •15.2.14 Drug Repurposing
- •References
- •16.1 Introduction
- •16.2 Antifungal Agents
- •16.2.1 Azoles
- •16.2.2 Posaconazole
- •16.2.3 Isavuconazole
- •16.2.4 SUBA—Itraconazole
- •16.2.5 Nanovoriconazole
- •16.2.6 Adverse Effects
- •16.3 Liposomal Amphotericin B (LAMB)
- •16.3.1 Echinocandins
- •16.4 Combination Antifungal Therapy
- •16.5 Therapeutic Drug Monitoring (TDM)
- •16.5.1 Azole-Resistant Aspergillus Spp.
- •16.6 Guideline Recommendations
- •16.10 Conclusion
- •References
- •17.1 Introduction
- •17.3 Potent Antifungal Molecules Under Investigations
- •References
- •19.2 Host–A. fumigatus Interactions
- •19.3.1 Hydrophobicity or Rodlet Layer
- •19.3.2 Conidiation
- •19.3.3 DHN Melanin
- •19.3.5 Siderophores
- •19.3.6 Biofilm Formation
- •19.4 Conclusion
- •References

394
resistance testing in clinical isolates is important to decide on appropriate therapy
(Chowdhary etal. 2017).
C. Gupta and S. A. Dar
16.6 Guideline Recommendations
IDSA recommends triazoles as the preferred agents for the treatment and prevention
of IA, voriconazole is considered as rst-line therapy, and alternatively, other azoles
such as posaconazole, itraconazole or isavuconazole may be considered (Patterson
etal. 2016). The recommended treatment duration for IA is 6–12weeks depending
on the degree and duration of immunosuppression, site of disease, and treatment
response. Alternatively, LAMB or Echinocandins may be considered if azoles cannot be considered or contraindicated. Surgical debridement not only helps in the
removal of the source but also better penetration of antifungal agents; it may be
considered inlocalized infections, such as localized sinus infections, focal CNS
lesions, endocarditis, septic arthritis, or osteomyelitis.
Recently, the European Society for Clinical Microbiology and Infectious
Diseases, the European Confederation of Medical Mycology, and the European
Respiratory Society jointly published guidelines for the management of
Aspergillosis disease (Ullmann et al. 2018). These guidelines recommend
Isavuconazole or voriconazole as rst-line targeted therapy for IPA and LAMB as
an alternative agent, while for extrapulmonary disease, voriconazole is the rstline therapy. Posaconazole is recommended as primary prophylaxis in neutropenic or hematological malignancies or transplant recipients. In cases of hepatic
insufciency, LAMB is the preferred choice. In cases of Aspergillus fumigatus
with high azole MIC, LAMB is to be considered as rst-line therapy or a combination therapy should be considered. In addition, there are chances of Aspergillus
avus having high MIC for LAMB; hence, voriconazole or isavuconazole is to be
considered as rst-line therapy. It is suggested to de-escalate from intravenous to
oral therapy once the patient is clinically and pharmacokinetically stable. No
dened treatment duration is recommended and antifungal therapy continues until
clinical response is achieved.
16.7 Treatment ofChronic Pulmonary Aspergillosis (CPA)
Treatment of Aspergilloma or nodules involves surgical resection, wherever feasible. Antifungal therapy is used in chronic cavitary or brosing pulmonary aspergillosis (CCPA or CFPA) with the goal of therapy to control infection, hemoptysis, and
halt the progression of brosis. Oral triazoles are considered the treatment of choice
(Ullmann etal. 2018). Sehgal etal. ranked itraconazole as the best oral agent in a
network rank analysis; voriconazole and posaconazole are alternatives (Sehgal etal.
2021). There are no data regarding the use of Isavuconazole for CPA.The treatment
duration is long about 6months and may be extended to 9–12months in certain
cases; however, patients who deteriorate in the initial 6 months should be

16 Recent Advances intheManagement ofAspergillosis
395
considered treatment failures and switched to alternative agents (Denning etal.
2016; Sehgal etal. 2020). In case of non-tolerance or resistance to triazoles, alterna-
tive intravenous agents such as LAMB or echinocandins can be considered. A strategy involving an initial induction course with intravenous agents followed by
long-term oral therapy has been tried in a few cases. The treatment is individualized
based on factors, such as respiratory disability, tolerability, drug interactions, and
affordability.
16.8 Treatment ofAllergic Bronchopulmonary
Aspergillosis (ABPA)
The goal for treatment of Allergic Bronchopulmonary Aspergillosis (ABPA)
involves symptom control, preventing or treating exacerbation and preventing
inammation and progression to brotic or cavitatory disease. Corticosteroids are
the cornerstone of ABPA treatment. Long-term steroid use has adverse effects and
around 20–45% of patients become steroid-dependent (Agarwal et al. 2006).
Antifungal drugs work by decreasing fungal load, antigenic stimulus and preventing
inammatory progression, reducing steroid dependency. The combination of itraconazole with steroids proved better in reducing ABPA exacerbations than steroid
monotherapy alone (Agarwal etal. 2021). Voriconazole has also proven effective
compared to steroids in acute-stage ABPA (Agarwal et al. 2018). The data for
posaconazole and isavuconazole for the treatment of ABPA are lacking, hence not
recommended (Table16.3).
Table 16.3 Summary of the antifungal treatment of Aspergillosis. (Patterson etal. 2016; Ullmann
etal. 2018)
Indication
Treatment of IA Voriconazole or
Prophylaxis for IAPosaconazole Intermittent high dosing LAMB (twice weekly)
Aspergillus
isolates
Azole
MIC=2mg/mL
Aspergillus
isolates
Azole MIC
>2mg/mL
CPA Itraconazole Voriconazole (alternate therapy)
ABPA Itraconazole Voriconazole (alternate therapy)
Drug
Isavuconazole
LAMB
Voriconazole +
Echinocandin
LAMB Voriconazole/Posaconazole + Anidulafungin/
Alternative
LAMB
Or Itraconazole as salvage therapy
Micafungin 50mg
Itraconazole 400mg/day, oral solution
–
Caspofungin
Caspofungin or Micafungin monotherapy
Posaconazole or Isavuconazole
Salvage therapy in ABPA, CPA (intolerance,
ADE, clinical failure)

396
C. Gupta and S. A. Dar
16.9 Newer Antifungal Agents inPipeline
1. CD101 (Rezafungin), echinocandin, with structural modications, a cyclic
hexapeptide with a choline moiety at the C5 ornithine position provides improved
stability, resulting in an enhanced safety prole and extended half-life of approximately 130h (Krishnan etal. 2017) (Fig.16.4). The drug is being developed as
a weekly intravenous and oral formulation and is currently in Phase III trial
ReSPECT (NCT04368559) (Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl
etal. 2021).
2. Ibrexafungerp, SCY-078 (Scynexis), a derivative of the natural product enfuma-
fungin, being developed as an oral formulation, structurally different from available echinocandins, a large volume of distribution and is active against
echinocandin-resistant Aspergillus spp. (Walker etal. 2011) (Fig.16.4). Currently,
this drug is in phase III clinical trial (SCYNERGIA, NCT03672292; FURI,
NCT03059992) (Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl etal. 2021).
3. Fosmanogepix (APX001) APX001, an N-phosphonooxymethyl, is a prodrug,
broken down by systemic alkaline phosphatases to the active component,
APX001A that specically inhibits the fungal enzyme glycosylphosphatidylinositol (GPI) anchored wall transferase (Gwt1), inactivating post-translational
modication of GPI anchor proteins, the disruption of GPI-anchored protein
Fig. 16.4 Newer antifungal agents and mechanism of action. (Adapted from Hoenigl etal. 2021)

16 Recent Advances intheManagement ofAspergillosis
397
maturation, and interferes with fungal adhesions (Fig.16.4). Currently, phase III
trial of fosmanogepix in the treatment of IA is ongoing (AEGIS, NCT04240886)
(Vahedi-Shahandashti and Lass-Flörl 2020; Hoenigl etal. 2021).
4. F901318 (F2G) or Olorom belongs to class the orotomides and is a reversible
inhibitor of A. fumigatus dihydroorotate dehydrogenase (DHODH) involved in
the denovo pyrimidine biosynthesis pathway (Walker etal. 2011) (Fig. 16.4).
The compound is highly pathogen-specic and is currently in phase III of clinical trials, (NCT0286178) (Hoenigl etal. 2021).
5. Opelconazole is similar to azole in structure and mechanism of action devel-
oped as an inhaled azole. It is highly lipophilic, available in micronized particles
micronized drug particles, resulting in high local concentrations in the lung,
slow absorption from the lung into plasma reduced toxicity, and has been developed particularly for pulmonary fungal infections, however, not active against
Aspergillus niger (Hoenigl etal. 2021).
6. VT-1598 is triazole metal-binding group substituted with tetrazole, resulting in
more specic inhibition of fungal Cyp 51 enzymes nally targeting ergosterol
biosynthesis with clinically signicant reduced drug–drug interactions
(Fig.16.4) (Yates etal. 2017). In vitro, studies have demonstrated the potent
activity of VT-1598 against Aspergillus fumigatus CYP51A mutants with elevated posaconazole and voriconazole MICs; this compound is currently in phase
I of clinical trials (Wiederhold etal. 2018).
7. Structurally Modied Amphotericin B (AMB cochleate): An improved deliv-
ery system in the form of AMB cochleate lipid–crystal nanoparticles has been
developed to confer stability against degradation by gastrointestinal enzymes
(Santangelo etal. 2004). AMB cochleate, a multilayered structure with a solid
lipid bilayer with no inner aqueous space and is made up of phosphatidylserine
with phospholipid–calcium precipitates (Santangelo et al. 2000). Oral AMBcochleate has shown good results in animal models and is currently in Phase II
clinical trials (NCT02971007 and NCT02629419) (Vahedi-Shahandashti and
Lass-Flörl 2020).
Ibrexafungrip and Rezafungin are modications of echinocandins inhibiting fungal cell wall synthesis. Fosmanogepix specically inhibits the fungal enzyme GPI
anchored wall transferase (Gwt1) disrupting GPI-anchored protein maturation and
fungal adhesions. Opelconazole are modications of azoles and inhibit the conversion of lanosterol to ergosterol. Olorom is a reversible inhibitor of A. fumigatus
DHODH involved in the denovo pyrimidine biosynthesis pathway.
16.10 Conclusion
Aspergillosis is a complex disease with varied clinical manifestations, IA carries a
high risk of morbidity and mortality, particularly in immunocompromised patients.
The management is more complex with susceptible populations, increasing antifungal resistance and potential drug interactions. It is imperative to develop new strategies and newer agents for the management of Aspergillus spp. infections.

398
C. Gupta and S. A. Dar
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C. Gupta and S. A. Dar

Drug-Resistance Patterns
inOpportunistic Aspergilli: AMolecular
Perspective
SoniaKumariShishodia , RamanThakur, PriyaGautam,
Saurav, Neha, andJataShankar
Abstract
Mycosis, invasive aspergillosis, caused by pathogenic and opportunistic fungi is
of medical concern. In modern times, the primary factor contributing to the lack
of success in medical treatments is the widespread presence of isolates that
exhibit resistance to existing drugs on a global scale. As perliterature, Aspergillus
infections are widespread, so the drug-resistance mechanism must be carefully
considered. Antifungal resistance is a major health issue, especially for immuno-
compromised people. The resistance mechanism of major Aspergillus species
has been explored at a molecular level and correlated with the cellular level.
Furthermore, several studies have been conducted on the role of biolm forma-
tion and its contribution to the mechanism of drug resistance. The functional
signicance of genes (FKs1, CYP51, ERG11, ERG5, ERG6, ERG25, SSC70,
GANA, TFT1, and ERFD), proteins (HSP, ABC Transporters, RAS, RAM,
NADH, PtaB, and superoxide dismutase), transcriptional factors (CRZ1, SrbA,
SomA, PtaB, Spt20, and UPC2), and others factors (ECM and reactive oxygen
17
S. K. Shishodia (*)
University Institute of Biotechnology, Chandigarh University, Mohali, Punjab, India
R. Thakur
Department of Medical Laboratory Science, Lovely Professional University,
Jalandhar, Punjab, India
P. Gautam · Neha · J. Shankar (*)
Genomic Laboratory, Department of Biotechnology and Bioinformatics, Jaypee University of
Information Technology, Waknaghat Solan, Himachal Pradesh, India
e-mail: jata.shankar@juit.ac.in
Saurav
Department of Civil Engineering, Jaypee University of Information Technology,
Waknaghat Solan, Himachal Pradesh, India
© The Author(s), under exclusive license to Springer Nature Singapore Pte
Ltd. 2024
S. Hameed, P. Vijayaraghavan (eds.), Recent Advances in Human Fungal
Diseases, https://doi.org/10.1007/978-981-97-4909-6_17
401

402
S. K. Shishodia et al.
species) from environmental and clinical isolates of Aspergilli, concerning to
antifungal drug interactions, have been documented. This chapter discusses
theresistance pattern, potent antifungal compounds, and potential vaccine candi-
dates to address the global health issue related to Aspergilli.
Keywords
Reactive oxygen species · CYP51 · ERG5 · ERG11 · HSP
17.1 Introduction
Fungal pathogen represents a signicant clinical and industrial relevance, as well as
a source of opportunistic infectious agents in individuals with compromised immune
systems (Day 2017; Latgé 1999). The Aspergillus genus encompasses around 350
species, with the number of newly discovered species increasing every year. There
exists an array of approximately 40 distinct species of Aspergilli, all of which have
the potential to induce infections and elicit allergic responses in humans. Certain
species of Aspergillus have gained medicinal importance (Kocsubé and Varga 2017;
Samson and Varga 2009). Aspergillus species may infect humans with compro-
mised immune systems and, less often, healthy people. The most common species
is A. fumigatus (67–73%). A. avus follows with 10–16%, while A. terreus accounts
for 3–4% and A. niger has the lowest laboratory rate of invasive disease (2.4%) but
clinical studies show 4–8.7% of invasive aspergillosis (IA) (Pagano etal. 2001;
Posch et al. 2018; Steinbach et al. 2012). As reported earlier, ~ 20% isolates of
Aspergillus are resistant to the available antifungals drugs (WHO Fungal Priority
Pathogens List to Guide Research 2022). There has been a notable rise in the occurrence of cancer, viral infections such as HIV, malignancies, organ transplantation,
and autoimmune diseases, which subsequently result in secondary fungal diseases
(Denning etal. 2013; Zheng and Zhang 2014). The COVID-19 pandemic has added
increased cases to ICUs with an estimated overall mortality of 35.5% (Armstrong
and Kane 2021). Risk factors for ventilator-associated pneumonia and CAPA
include dysregulation in immune system and diffuse alveolar damage in severe
SARS-CoV-2 infection or therapy with corticosteroids or anti-interleukin-6
(Paramythiotou etal. 2021; Somers etal. 2021). Despite the increased number of
CAPA cases, the number of CAPA cases varied greatly between hospitals and
nations, with ICU reported rates ranging from 3% to 33% (Arastehfar etal. 2020).
Aspergillus conidia reside in external environment is less active/dormant. Cell
bound and cell-free receptors recognize the cell wall component of conidia/mycelia
to initiate the host immune response (Thakur and Shankar 2016a). Aspergillus or
drug-resistant isolates cause aspergillosis posing a threat to humans (Shishodia
etal. 2019). Furthermore, the emergence of Aspergilli drug resistance has posed a
signicant threat to the global Aspergillus threat (Chowdhary etal. 2013; Denning
etal. 2013). Moreover, the failure to promptly identify Aspergillus-related infections is a potential hazard for susceptible individuals. Presently, three classes of
antifungal drugs are available; polyenes, triazoles, and echinocandin. Antifungal

17 Drug-Resistance Patterns in Opportunistic Aspergilli: A Molecular…
403
drugs target cell walls, disrupting ergosterol biosynthesis or β-1, 3-glucan.
Multidrug-resistant fungus and intrinsically resistant pathogens pose a greater threat
to this, and that is why, researchers are endeavoring to develop new anti-Aspergillus
targets and medication to combat infections (Groll and Kolve 2004; Shishodia etal.
2019). Elucidating the genomes/proteomes of many Aspergillus species has helped
us understand their biology and processes. High-throughput methods such as microarray, RNA-seq, and mass spectrometry can help identify pathogenesis, virulence,
and drug-resistance factor (Cerqueira et al. 2014). This book chapter examined
drug-resistance mechanisms and molecular factors such as transcriptional factors
genes/proteins and signaling cascades. In particular, the current study may help us
understand Aspergillus drug-resistance mechanisms at the molecular and cellular level.
17.1.1 Occurrence ofDrug-Resistance among Aspergilli
Although some Aspergillus species are initially tolerant to antifungals, others may
develop resistance due to prolonged and inadequate dosing. Rivero-Menendez etal.
(2016) conducted a brief overview of azole-based drug resistant in Aspergillus species. The study found the most azole-resistant isolates in Europe (Rivero-Menendez
etal. 2016). The WHO now lists Aspergillus fumigatus among 19 priority fungal
pathogens, including Cryptococcus neoformans, Candida auris, and Candida albi-
cans in the critical group (Cadena etal. 2021). A. fumigatus azole-resistant strains
range from 6.6% to 28% globally,In UK 2.1–20%, Clinical and environmental
isolates in the Netherlands, Germany, and France have 10–12% Rivero-Menendez
et al. (2016), estimated 10% resistance in Asia, Africa, America, and Australia.
In India 32.4% of A. fumigatus isolates from clinical samples have been found
(Rivero-Menendez etal. 2016; Shishodia etal. 2019).About 1.75% of these isolates
are resistant to azole antifungals. Resistance isolates were lower in India than in
Europe, likely due to the limited use of azole fungicides in Asia (Berger etal. 2017;
Chowdhary etal. 2013, 2015) Broth microdilution or gradient strip tests are used to
assess minimum inhibitory concentration (MIC) values for antifungal drug activity
according to EUCAST or CLSI guidelines (Espinel-Ingroff etal. 2013). Recently,
the EUCAST provides epidemiological cutoff values (ECOFFs) for the triazoles
(Arendrup et al. 2020). In addition, the formation of biolms often confer transient
resistance to antifungal drugs (Seidler etal. 2008; Villena etal. 2009; Bruns etal.
2010b; Kaur and Singh 2014; Paul etal. 2017b).
Aspergillus terreus is a prominent etiological agent of aspergillosis in Austria, as
well as Houston, Texas (Blum etal. 2008; Lass-Flörl etal. 2007). In India, 6.6% of
the aspergillosis cases were attributed to A. terreus isolates in Delhi regions
(Chowdhary etal. 2015). A recent report showed that around 8% of A. terreus isolates showed MICs ranging from 0.5 to 1mg/L against AmB with no discernible
patterns in genotype (Kathuria etal. 2015). A. terreus isolates exhibit inherent resis-
tance to AmB (Steinbach etal. 2004a, b). In addition, A. terreus with elevated MICs
against AmB was noted (Graybill etal. 2004; Lass-Flörl etal. 2007; Steinbach etal.
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