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Файл:Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_5525_Библиотеки_им_академика_М_И_Перельмана.pdf
X
- •Foreword
- •Acknowledgments
- •Editor biographies
- •Yi Wang
- •X. Sharon Qi
- •List of contributors
- •1.2.3 Feature engineering and representation
- •1.2.4 Linear separability
- •1.2.5 Classical models
- •1.1 A brief introduction to AI
- •1.2 Machine learning basics
- •1.2.1 Learning paradigms
- •1.3 Artificial neural networks
- •1.3.1 Feed-forward neural networks
- •1.3.2 Recurrent neural networks
- •1.3.3 Convolutional neural networks
- •1.3.4 Attention
- •1.3.5 Training neural networks
- •1.3.6 Applications and use cases of deep learning
- •1.4 Model training and evaluation
- •1.4.1 Hyperparameters
- •1.4.2 Data split
- •1.4.3 Evaluation metrics
- •1.5 Generative models
- •1.5.1 Generative adversarial networks
- •1.5.2 Diffusion models
- •1.5.3 Applications and use cases
- •1.6 Ethical consideration and bias
- •1.6.1 Transparency and explainability
- •1.6.2 Bias and fairness
- •1.6.3 Data privacy violation
- •1.6.4 Risk and misuse
- •1.7 Summary
- •References
- •2.1 Introduction
- •2.1.2 Staff roles in radiation therapy
- •2.2 Overview of AI in radiation therapy
- •2.2.1 Patient evaluation and dose prescription
- •2.2.2 Treatment simulation
- •2.2.3 Contouring
- •2.2.4 Treatment planning
- •2.2.5 Quality assurance
- •2.2.6 Treatment delivery
- •2.2.7 Response assessment and toxicity management
- •2.3 Summary
- •3.1 Introduction
- •3.1.1 Introduction of clinical decision making and AI
- •3.1.2 The role of AI in clinical decision making
- •3.2 AI algorithms for clinical decision making
- •3.2.2 Radiomics
- •3.2.3 Data integration by AI
- •3.2.4 Interpretability of AI models
- •3.3 Application of AI in clinical decision making
- •3.3.1 Diagnosis and disease phenotyping
- •3.3.2 Personalized treatment
- •3.3.3 Treatment outcome and prognosis prediction
- •3.4 Challenges and future directions of AI in clinical decision making
- •3.4.1 Challenges and concerns
- •3.4.2 Future directions
- •3.5 Summary
- •References
- •4.1 Introduction
- •4.2 Imaging for treatment planning
- •4.2.1 CT simulation
- •4.2.2 4D-CT
- •4.2.3 PET/CT
- •4.2.4 MRI
- •4.3 Imaging for treatment guidance
- •4.3.1 Portal imaging
- •4.3.2 CBCT
- •4.3.3 CT-on-rail and CT-linac
- •4.3.4 MR-linac
- •4.3.5 PET-linac
- •4.4 Imaging for motion management
- •4.4.1 ExacTrac
- •4.4.2 Varian triggered imaging
- •4.4.3 4D-CBCT
- •4.4.4 Cine MRI
- •4.4.5 4D-MRI
- •4.4.6 Surface imaging
- •4.5 Imaging for treatment assessment
- •4.5.1 Contrasted CT
- •4.5.2 PET/CT
- •4.5.3 Functional MRI
- •4.6 Summary
- •5.1 Introduction to big data in radiation oncology
- •5.1.1 Overview of big data
- •5.1.2 Sources of big data in radiation oncology
- •5.1.3 Big data and AI in radiation oncology
- •5.2 Big data lifecycle in radiation oncology
- •5.2.1 Data aggregation and storage
- •5.2.2 Data sharing and security
- •5.4 The application of big data in radiation oncology
- •5.4.1 Medical image segmentation
- •5.4.2 Automatic treatment planning
- •5.4.3 Treatment response prediction
- •5.4.4 Quality assurance and patient safety
- •5.4.5 Clinical decision support
- •5.2.3 Data visualization
- •5.2.4 Knowledge creation and implementation
- •5.2.5 Data archiving and deletion
- •5.3 Big data analytics with AI
- •5.3.1 Data processing and integration
- •5.3.2 AI modeling
- •5.5 Challenges and future perspectives
- •5.6 Summary
- •Reference
- •6.1 The road to ART
- •6.1.1 3D conformal radiotherapy (3DCRT)
- •6.1.2 Intensity modulated radiotherapy (IMRT)
- •6.1.3 Image-guided radiotherapy (IGRT)
- •6.1.4 Adaptive radiotherapy (ART)
- •6.2 ART workflow and implementation
- •6.2.2 Current practice
- •6.2.3 Clinical impact
- •6.3 Considerations for implementing online ART
- •6.3.1 Time as a limiting factor
- •6.3.2 Implications for fast and reliable re-planning
- •6.3.4 Clinical considerations
- •6.4 Summary
- •7.1 Components of ART workflow
- •7.1.1 Simulation
- •7.1.2 Pre-planning
- •7.1.3 Online imaging and daily re-planning
- •7.1.4 Quality assurance
- •7.2 AI-driven ART
- •7.2.1 Simulation
- •7.2.2 Pre-planning
- •7.2.3 AI for delivery
- •7.3 Outlook and future directions
- •7.3.1 Real-time ART with AI
- •7.3.2 Dose escalation and functional adaption with AI
- •7.4 Summary
- •References
- •8.1 Introduction
- •8.2 Synthetic CT: deep learning methods
- •8.2.1 Conventional methods
- •8.2.2 U-Net
- •8.2.3 Generative adversarial networks
- •8.2.4 Denoising diffusion probabilistic model
- •8.3 Synthetic CT from CBCT
- •8.3.1 Noise and artifact reduction
- •8.3.2 Online dose calculation
- •8.3.3 Online image segmentation
- •8.4 Synthetic CT from MRI
- •8.4.1 Synthetic image accuracy
- •8.4.2 Dose calculation in MR-only radiation therapy
- •8.4.3 PET attenuation correction
- •8.4.4 Image registration
- •8.5 Discussion and outlook
- •8.6 Summary
- •References
- •9.1 AI-based image registration and segmentation for ART
- •9.1.1 Adaptive radiation therapy
- •9.2 Artificial intelligence
- •9.2.1 What is machine learning?
- •9.2.2 What is deep learning?
- •9.3 Deep learning: the basic components
- •9.3.1 Convolutional neural networks: looking at the picture
- •9.3.2 Pooling layers: keeping what matters most
- •9.3.3 Fully connected (dense) layers: bringing it all together
- •9.3.4 Activations
- •9.3.5 Loss: driving the model
- •9.3.6 Auto-encoders: remove the noise
- •9.3.7 Supervised versus unsupervised learning
- •9.3.8 Pre-trained convolutional neural networks
- •9.4 Image registration: bringing two images together
- •9.4.1 Registration similarity metrics
- •9.4.2 Types of registrations
- •9.5 AI-based image registration
- •9.5.1 Supervised learning
- •9.5.2 Unsupervised learning
- •9.5.3 Registration in ART
- •9.5.4 Commonalities in architectures
- •9.6 Image segmentation
- •9.6.1 Introduction: coloring by the numbers
- •9.6.2 Segmentation networks
- •9.6.3 Best practices
- •9.7 Summary
- •10.1 Introduction
- •10.1.1 Overview of chapter content
- •10.2 The landscape of AI-assisted dose prediction
- •10.2.1 Traditional machine learning for dose prediction
- •10.2.2 Deep learning-based dose prediction
- •10.2.3 Challenges in AI-assisted dose prediction
- •10.3 Re-planning workflows powered by AI
- •10.3.1 Deep learning for re-planning pipelines
- •10.4 Future directions of AI-assisted dose prediction and re-planning
- •10.5 Summary
- •11.1 Introduction
- •11.2.1 Imaging-based motion monitoring
- •11.2.2 Delivery system actions
- •11.2.3 Challenges for real-time ART implementation
- •11.3 AI in real-time ART workflows
- •11.3.1 Improving intrafraction motion monitoring through AI
- •11.3.2 Mitigating system latency through AI
- •11.4 AI for ART delivery: future directions
- •11.4.1 Management of non-respiratory motion
- •11.4.2 Training AI models with small or unpaired datasets
- •11.4.4 Biology-guided ART delivery
- •11.5 Summary
- •References
- •12.1 Introduction
- •12.2 Patient QA
- •12.2.1 Pre-planning QA
- •12.2.2 Pre-treatment plan QA
- •12.2.3 On-treatment QA
- •12.3 Treatment delivery systems and instruments
- •12.3.1 Machine commissioning
- •12.3.2 Machine QA
- •12.3.3 Dosimetry tool QA
- •12.4 Summary
- •References
- •13.1 Data resources for response modeling in radiotherapy
- •13.1.1 Clinical data
- •13.1.2 Imaging (radiomics)
- •13.1.3 Treatment planning (dosiomics)
- •13.1.4 Multiomics
- •13.2 Radiotherapy treatment outcome modeling
- •13.2.1 TCP/NTCP in radiotherapy
- •13.2.2 Clinical outcomes versus PROs
- •13.2.3 Machine learning response prediction
- •13.2.4 Explainability of ML response models
- •13.2.5 Sample use cases
- •13.3 AI response-based adaptive radiotherapy
- •13.3.1 Requirements and challenges
- •13.3.2 Prediction versus treatment optimization
- •13.3.3 Sample use cases
- •13.4 Challenges and recommendations
- •13.5 Summary
- •Acknowledgments
- •References
- •14.1 Overview of challenges in AI-driven ART
- •14.2 Data challenges
- •14.2.1 Data availability
- •14.2.2 Data quality
- •14.2.3 Data privacy
- •14.3 Technical challenges
- •14.3.2 Model robustness and generalizability
- •14.3.3 Model explainability and interpretability
- •14.4 Challenges associated with online and real-time workflows
- •14.4.1 Image quality
- •14.4.2 Dose calculation
- •14.4.3 Real-time ART
- •14.5 Operational challenges
- •14.5.1 Clinical validation
- •14.5.3 Staff training
- •14.5.4 User experiences
- •14.5.5 Quality management program
- •14.5.6 Financial challenges
- •14.6 Ethical, regulatory, and legal challenges
- •14.6.1 Ethical issues
- •14.6.2 Regulatory and legal issues
- •14.7 Summary
- •References
- •15.1 Clinical considerations for CT-based offline ART
- •15.1.1 Patient and site selection
- •15.1.2 Re-simulation
- •15.1.3 Re-planning
- •15.1.4 Plan summation and evaluation
- •15.1.6 Limitations and future directions
- •15.2 Clinical considerations for CBCT/CT-based online ART
- •15.2.2 Patient and site selection
- •15.2.3 Simulation
- •15.2.4 Pre-planning review
- •15.2.5 Reference planning
- •15.2.9 Limitations and future directions
- •15.3 Summary
- •References
- •16.1 Introduction
- •16.2 Overview of MRI-guided ART systems
- •16.3 MRI-guided ART workflow
- •16.4 AI applications for MRI-guided ART
- •16.4.1 Synthetic CT generation
- •References
- •16.4.2 Auto-segmentation
- •16.4.3 Image registration
- •16.4.4 Others
- •16.4.5 Future AI development and implementation
- •16.5 Summary
- •17.1 Functional PET-guided ART
- •17.1.1 PET-based functional imaging overview
- •17.1.2 From anatomy to function: the power of PET in radiation therapy
- •17.1.5 Conclusions and future prospects
- •17.2 Functional MRI-guided ART
- •17.2.1 From anatomy to function: the power of functional MRI in radiation therapy
- •17.2.4 Conclusion and future prospects
- •17.3 Summary
- •References
- •18.1 Proton ART
- •18.1.1 Clinical context and necessity
- •18.1.2 Patient populations
- •18.1.4 Rationale for AI in proton ART
- •18.2 AI in proton ART
- •18.2.1 Imaging
- •18.2.2 Deformable and rigid registration
- •18.2.3 Contour propagation
- •18.2.4 Dose calculations
- •18.2.5 Plan optimization
- •18.2.6 Other developments
- •18.3 Implementation of adaptive proton therapy
- •18.4 Summary
- •References
- •19.1 Designing clinical trials with AI
- •19.1.1 The essential role of clinical trials
- •19.1.2 Trial protocols and methodologies
- •19.1.3 AI-driven clinical trial design and execution
- •19.1.4 Incorporation of digital twins (DTs) in clinical trials
- •19.2 Implementation of AI in ongoing clinical trials
- •19.2.1 Integration with existing clinical trial frameworks
- •19.2.2 Quality assurance, compliance, and standardization
- •19.3 Case studies of AI in adaptive radiotherapy trials
- •19.3.1 Overview of guidance for advanced radiotherapy in clinical trials
- •19.3.2 AI in the radiotherapy clinical trial quality assurance processes
- •19.4 Ethical and regulatory considerations
- •19.4.1 Patient consent and data privacy
- •19.4.2 Bias, fairness, and transparency
- •19.4.3 Regulatory guidelines and compliance
- •19.5 Future directions and challenges
- •19.5.1 Emerging technologies and techniques
- •19.5.2 Alternative strategies
- •19.6 Conclusion
- •19.7 Summary
- •References
- •20.1 Risk management
- •20.1.1 Prospective risk assessments
- •20.1.2 Root cause analysis

Artificial Intelligence in Adaptive Radiation Therapy
successful applications in radiotherapy, such as generating ‘synthetic CT’ from MRI
for radiation treatment planning without paired MRI and CT images for model
training [91–93]. In computer vision, generative models have demonstrated superior
performance in modeling and synthesizing human motions [94, 95]. For motion
monitoring during ART delivery, generative models may facilitate the learning of
motion priors from population image datasets. To focus on modeling motioninduced anatomical variations, targets and OAR volumes need to be aligned to the
same coordinate system through group image registration. The large variances in
individual anatomical configurations and imaging positions, however, will challenge
the accuracy of group image registration, thus potentially degrading the model
quality. Effective learning of motion priors without well-aligned training samples
has the potential of simplifying training data collection and preprocessing, improving model accuracy, and guiding ART delivery with high-quality motion information, especially for non-cyclic motions, such as organ fillings, where patient-specific
motion modeling may be less effective.
11.4.3 Uncertainty quantification for AI models
While AI models have demonstrated significant potential in supporting ART
delivery with improved treatment precision, reliable clinical implementation cannot
be achieved without a method to quantify the uncertainty of model outputs.
Although ad hoc model validation can be done by comparing model outputs to
the ground truth, such ground truth is only available after the delivery of the
radiation dose. To ensure patient safety and give clinicians confidence in trusting
model outputs, instantaneous feedback on model quality is important for AI models
developed for ART delivery.
Confidence intervals have been established for certain statistical machine learning
models as a quantitative measure of model output quality. Ginn et al investigated
confidence interval estimation for a kernel regression model developed for respiratory motion prediction [96]. The estimator consists of three components, including
the goodness of model fit, the robustness of prediction quantified through leave-oneout cross-validation, and the velocity of the target. The estimator was evaluated for
20 abdominal subjects imaged with 2D cine MRI for respiratory motion monitoring.
An increase of gating accuracy of –2% was reported by overriding the gating
decision when the confidence interval estimator suggested a prediction error.
Gaussian models have also been utilized to infer target position or motion fields,
from surrogate markers or sparse imaging data. The uncertainty was then quantified
through the covariance matrix of the linear Gaussian system [97, 98]. As illustrated
in figure 11.11, changes of motion patterns can be detected and unreliable motion
estimation can be rejected when the associated estimation uncertainty exceeds a
certain threshold.
Bayesian networks have been investigated to output both prediction values and
prediction uncertainties. Instead of predicting deterministic values, Bayesian networks predict probabilistic distributions based on network weights and inputs, thus
11-19

Artificial Intelligence in Adaptive Radiation Therapy
Figure 11.11. Unreliable motion estimations were rejected based on the estimation uncertainty when motion
pattern changes, as indicated by the changing patterns in the center of mass-coordinates. (Reproduced from
[
98]. CC BY 4.0.)
permitting uncertainty quantification based on the probabilistic distribution. Given
a set of initial clinical information, the network outputs the probability of obtaining
certain radiotherapy parameters. A low probability therefore corresponds to
potential errors in the radiotherapy plan. Law et al applied a Bayesian network to
quantify the uncertainty of synthetic CT generated from MRI for radiation treatment planning [99]. The network outputs were computed using Monte Carlo
integration. The synthetic CT values were estimated as the expected values of 100
simulation outputs, and the associated estimation uncertainty was characterized by
the Monte Carlo simulation output spread. Uncertainty estimation for image
reconstruction has also been investigated using a Markov chain Monte Carlo
method, where both the image voxel values, and their associated uncertainties,
were calculated from under-sampled MRI data [ 100]. Future work on uncertainty
quantification for motion modeling, in particular for high-dimensional motion
modeling such as DVF estimation and prediction, will facilitate clinical translation
of AI models to support ART delivery.
11.4.4 Biology-guided ART delivery
Biological imaging modalities such as positron emission tomography (PET) provide
tumor functional information that may be used to guide radiotherapy plan and
delivery. Several clinical trials are investigating the benefits of biology-guided ART
planning, where images providing biological information of the target [101–103] are
acquired in the middle of a treatment course for offline plan adaptation. Target
motion monitoring using PET has also been investigated through phantom studies
[104]. The method combines external surrogate signals with PET signals to
reconstruct gated PET images. The target centroid was estimated from the
segmented target volume on the gated PET images. The author reported an
averaged centroid position estimation error of 1.6 mm for both 1D and 3D motion
patterns. The error decreased with time as more coincidence events were accumulated and converged in approximately 90 s.
The advent of PET/CT-linac systems has also permitted PET-guided ART delivery.
This technology utilizes CT images for patient set-up and PET detection of outgoing
11-20

Artificial Intelligence in Adaptive Radiation Therapy
Figure 11.12. (a) Layout of the PET arcs in the gantry. (b) Phantom image acquired using the PET imaging
subsystem of the PET-linac system. (Reproduced with permission from [
Authors. Published by the British Institute of Radiology.)
105]. Copyright 2022, 2023 The
tumor emissions for target motion monitoring during treatment delivery [39].
The motion information is used to guide the system to conform the MV radiation
beamlets to the moving target. Preliminary investigations have characterized the
imaging quality and tracking accuracy of the PET/CT-linac system [105, 106]. As
shown in figure 11.12, a phantom study using the PET imaging subsystem demon-
strated comparable spatial resolution and image contrast to diagnostic imaging
systems, while the sensitivity and count rate were lower due to the smaller detector
area. The tracking accuracy was also characterized through phantom studies with
varying levels of PET biodistributions [106]. With good contrast between target and
background PET signals (8:1 in PET biodistributions), the tracked dosimetry showed
a prescription covering the target of 100%, while for the case with poor contrast (2:1 in
PET biodistributions), the prescription covering the target dropped to 88%. In these
low contrast cases, the system also flagged warnings based on the low activity
concentration within the target.
The accuracy of motion monitoring during PET-guided ART delivery critically
depends on PET image quality. To reduce patient motion and imaging dose, it is
desirable to lower the injection dose and shorten the PET scan time. However, the
low injection dose and the short scan time can lead to image quality degradation,
exacerbated by hardware limitations such as smaller detectors that have lower count
rates and sensitivity. AI models have demonstrated promising performance in lowdose PET reconstruction. For diagnostic PET reconstruction, generative adversarial
networks have been explored to enhance the quality of low-dose PET images [107].
The network was trained using population-based datasets containing both low-dose
and high-dose PET images acquired from a patient population. Lim et al integrated
neural network-learned priors of high-dose PET images with a physical model of the
PET imaging system to improve low-dose PET reconstruction [108]. The network
served as a data regularization term during the iterative image reconstruction
11-21

Artificial Intelligence in Adaptive Radiation Therapy
Figure 11.13. Transverse slices from full-dose PET images of different treatment fractions along with the
corresponding low-dose images and the images predicted by the U-Net and the teacher–student U-Net for one
example patient. (Reproduced from [
109]. Courtesy of Cornell University.)
process by penalizing deviations of model estimation from network-learned priors.
The method demonstrated good generalizability across different datasets, where the
network was trained using PET images of a sphere phantom and tested using PET
images of an anthropomorphic torso phantom.
For the image reconstruction of the PET-Linac system, Fu et al proposed a
patient-specific deep learning model that enhances low-dose PET images using highdose PET images of the same patient [109]. The model comprises a teacher U-net
and a student U-net. The training dataset was created by subsampling coincidence
events to generate various low-dose PET images from high-dose acquisitions. The
parameters of the student network were optimized to output high-dose PET from
low-dose inputs, while the parameters of the teacher network remained constant as
the moving-average values of the student network parameters. Consistency loss
between the teacher and student network was also incorporated during network
training. As shown in figure 11.13, the teacher–student model demonstrated
improved image quality compared to a single U-Net model. As more studies are
conducted on PET-linac systems, enhancing PET imaging through AI will enable
the full exploitation of the advantages of biology-guided ART delivery, with the
potential to improve treatment outcomes.
11.5 Summary
While significant advances in adapting treatments have begun to be implemented
clinically, they are inherently limited by the motions that occur during treatment. AI
has demonstrated the potential to improve treatment monitoring. Simpler AI
methods are in clinical use to aid motion tracking, and more advanced methods
have shown the potential to dramatically improve the efficiency and accuracy of
measuring, predicting, and reacting to changes that occur as treatment is being
delivered.
11-22

Artificial Intelligence in Adaptive Radiation Therapy
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