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Signal Transduction

A number of these mutated proteins operate in the early stages of tyrosine kinase signal transduction pathways. Cells may be transformed as a consequence of hypersecretion of growth factors, expression of variant forms of PTKs, over-expression of SH2/SH3-containing adaptor proteins, overexpression of serine/threonine protein kinases, or expression of variants of the small GTPases or their accessory proteins. At the downstream end of the signal transduction pathway, variants of transcription factors also act as potent cell transformers. Although tyrosine kinase phosphorylation accounts for only about 5% of total cellular phosphorylation activity, it has a key position in many signal transduction pathways and it is probably for this reason that the incidence of these genes in malignancy is so high (see Table 17.5).

A good example of cell transformation related to aberrant PTK activity is the role of JAK2 in acute lymphoblastic leukaemia (ALL). This is the most common childhood cancer of pre-B cell origin. These cells rely on paracrine or autocrine cytokine stimulation in order to proliferate and survive. Forms of this disease that are more resistant to chemotherapy express a constitutively activated mutant of JAK2.64 Apparently, this serves as a survival signal for these cells making them insensitive to the damage inflicted on DNA by chemotherapy which would normally induce apoptosis.65 Another example is Bcr-Abl, the cause of chronic myelogenous leukaemia (CML). This is a fusion protein caused by somatic reciprocal translocation between (paternal) chromosome 9 and (maternal) chromosome 22. The kinase activity of the fusion product, carried by Abl, is deregulated; we return to this topic in Chapter 23.

Essay: Non-receptor protein tyrosine kinases and their regulation

The nrPTKs comprise a large family with diverse roles in the control of cell proliferation, differentiation and death. Some are widely expressed; others are

Table 17.4  Families of non-receptor protein tyrosine kinases

ABL

ACK

CSK

FAK

FES

FRK

JAK

SRC-A

SRC-B

TEC

SYK

 

 

 

 

 

 

 

 

 

 

 

ABL1

ACK1

CSK

FAK

FER

BRK

JAK1

FGR

BLK

BMX

SYK

 

 

 

 

 

 

 

 

 

 

 

ARG

TNK1

MATK

PYK2

FES

FRK

JAK2

FYN

HCK

BTK

ZAP70

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

SRMS

JAK3

SRC

LCK

ITK

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

TYK2

YES1

LYN

TEC

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

TXK

 

 

 

 

 

 

 

 

 

 

 

 

532

TCR, BCR, Soluble Tyrosine Kinases and NFAT

restricted to particular tissues. Their early classification was dominated by the discovery of pp60src, to the extent that the major group of kinases was simply known as the Src family. There are at least 10 known subfamilies of nonreceptor PTKs (see Figure 17.1 and Table 17.4).

The Src family kinases all share a similar structure. A unique chain at the N-terminus is followed by SH3 and SH2 domains (actually, the very archetypes of these domains that are so widely expressed) followed by a kinase domain and short tail at the C-terminus. Many Src kinases function by association with macromolecular signalling complexes assembled at membrane sites. Membrane targeting may be promoted by the unique N-terminal domain. Within the Src family, Src itself (pp60c–src), Fyn, Lyn, and Yes are myristoylated at the N-terminus. This provides the opportunity for membrane attachment that may be strengthened by palmitoylation at a nearby cysteine. Similarly,

Table 17.5  Components of tyrosine kinase signal transduction cascades manifested as cellular or viral oncogenes:  These oncogenes are gain-of-function mutants of the wild-type proteins, such as receptor tyrosine kinases, adaptor proteins, or guanine exchange factors. Serine or threonine protein kinases can also acts as oncogenes, but in comparison with tyrosine protein kinases their contribution is relatively modest

Receptor

Non-receptor

Serine/threonine

SH2/SH3

Nucleotide

GTPase

tyrosine

tyrosine

protein kinase

adaptor

exchange

 

protein kinase

protein kinase

 

 

factor

 

 

 

 

 

 

 

Bek

Abl

Akt/PKB

Crk

Bcr

H-Ras

 

 

 

 

 

 

Eck

Blk

Cot

Nck

Dbl

K-Ras

 

 

 

 

 

 

Elk

Fgr

Mos

 

Ost

N-Ras

 

 

 

 

 

 

Eph

Fsp

Pim

 

Tiam

 

 

 

 

 

 

 

ErbB

Fyn

Raf

 

Vav

 

 

 

 

 

 

 

Flg

Hck

 

 

 

 

 

 

 

 

 

 

Fms

Jak

 

 

 

 

 

 

 

 

 

 

Kit

Lck

 

 

 

 

 

 

 

 

 

 

Met

Lyn

 

 

 

 

 

 

 

 

 

 

Neu

Src

 

 

 

 

 

 

 

 

 

 

Ret

Yes

 

 

 

 

 

 

 

 

 

 

TrkA

 

 

 

 

 

 

 

 

 

 

 

TrkB

 

 

 

 

 

 

 

 

 

 

 

TrkC

 

 

 

 

 

 

 

 

 

 

 

533

Signal Transduction

For historical reasons the residues of human c-Src were numbered according to the sequence of chicken c-Src. Thus residues 83–533 (chicken numbering) correspond to 86–536 in humans. We have used human numbering here.

members of the Btk/Tec family may become membrane-associated through their PH domains which can bind polyphosphoinositide lipids. Other nonreceptor PTKs are recruited to their sites of action through the association of their SH2 domains with phosphotyrosine residues present in their targets. Regardless of their location, most Src family kinases are held in an inactive state by an intramolecular interaction that links a phosphorylated tyrosine in the C-terminus with the N-terminal SH2 domain.

The three-dimensional structure of human c-Src in its inactive and active forms is shown in Figure 17.12. The catalytic machinery is contained within the kinase domain, while control is exerted through its interaction with the adjacent structures. The elements that direct the regulation are the SH2 and SH3 domains. pY530 provides an intramolecular binding site for the SH2 domain. In its normal inactive conformation, the SH2 domain binds to pY530 so allowing Src to adopt a compact, closed conformation in which the SH3 and SH2 domains are packed against the kinase domain. This is

achieved through the interaction of the SH3 domain with the chain that links the SH2 domain and the small kinase lobe. This linker adopts a left-handed helical conformation (a type II polyproline helix, although there is only one proline residue) that binds the SH3 domain on the one side and through hydrophobic interactions, the small lobe on the other. Thus the SH2 and SH3 domains pack against the kinase domain. This distorts the small lobe, impedes access to the cleft, and causes an outward rotation of the C-helix in the small lobe.

Activation follows events that destabilize the compact conformation. Lacking an isoleucine at pY 3, the sequence motif surrounding pY530 is not optimal for SH2 binding. This makes pY530 more accessible to tyrosine phosphatases as well as to competing SH2 domains of other proteins. Both events may lead to activation of Src, because it removes the inhibitory clamp of the

SH2 and SH3 domains. These two domains, together with the linker, then flip out, allowing the kinase domain to relax from its distorted form and for

autophosphorylation at Y419 in the activation segment, rendering the protein kinase catalytically competent.

The major suppressor of Src activation is Csk (c-Src kinase), itself a member of the Src family. Csk has no C-terminal tyrosine residue and no lipid modification and in consequence it is both constitutively active and confined to the cytosol. Its target is the Src C-terminal tyrosine (Y530). How does this cytosolic enzyme interact effectively with the plasma membrane-associated Src? It seems likely that a transmembrane docking protein Cbp66 recruits Csk through an interaction between the SH2 domain

of Csk and a phosphotyrosine on Cbp (see Figure 17.13). Cbp and Src are both

534

TCR, BCR, Soluble Tyrosine Kinases and NFAT

Fig 17.13  Regulation of Src kinase activity by Csk and CD45.

Csk is recruited in the TRC signalling complex through interaction of its SH2 domain with the transmembrane phosphoprotein Cbp. Src is inactivated by Csk through tyrosine phosphorylation of its C-terminal

tail (1). A tyrosine phosphatase removes the phosphate from the tyrosine in the activation segment

(2). Inactive Src can be reactivated by CD45 which removes the phosphate in the C-terminus (Pc) (3).

Autophosphorylation of the activation segment completes the process (PA)

(4). This mode of regulation is a good example of how retro-control can limit activity. Active Src phosphorylates Cbp causing de-activation. Loss

of Src activity and subsequent dephosphorylation of Cbp re-initiates a cycle of Src activation. Many oncogenic tyrosine kinases have the effect of obliterating such oscillations because they are unable to adopt their inactive state.

localized in lipid rafts. The inhibitory action is linked to the removal of the phosphate from the activation segment of Src by a phosphatase of unknown identity. Activation of Src might then initially involve the dephosphorylation of Cbp by a tyrosine phosphatase, amongst which CD45 is a good candidate. CD45 also removes the phosphate from the pY530, thus allowing autoactivation of Src.

535

Signal Transduction

List of abbreviations

Abbreviation

Full name/description

SwissProt

Other names, OMIM

 

 

entry

links

 

 

 

 

Abl-c

Abelson murine leukaemia viral oncogene

P00519

TNK1 (tyrosine non-

 

homologue

 

receptor kinase)

 

 

 

 

ACK1

activated Cdc42 protein kinase

Q07912

 

 

 

 

 

BTK

Bruton tyrosine kinase (Bruton’s

Q06187

 

 

agammaglobulinaemia)

 

 

 

 

 

 

calcineurin A

 

Q08209

PP2B, PPP3 catalytic

 

 

 

subunit a

 

 

 

 

calcineurin-B1

 

P63098

PP2B, PPP3 regulatory

 

 

 

subunit 1

 

 

 

 

Calmodulin

 

P62158

CaM

 

 

 

 

CARD

caspase recruiting domain

 

 

 

 

 

 

CARMA1

CARD-containing MAGUK protein-1

Q9BXL7

CARD11

 

 

 

 

Cbp

Csk-binding protein

Q9NWQ8

PAG1

 

 

 

 

CD3 -chain

cluster of differentation-3 epsilon chain (TCR)

P07766

 

 

 

 

 

CD3 -chain

cluster of differentiation-3 zeta chain (TCR)

P20963

CD247, TCR z-chain

 

 

 

 

CD4

cluster of differentiation-4

P01730

 

 

 

 

 

CD45

cluster of differentation-45

P08575

OMIM:608971

 

 

 

 

CIB4

calcium and integrin binding family

A0PJX0

 

 

member 4

 

 

 

 

 

 

CK1

casein kinase-1

P48729

 

 

 

 

 

CSK

c-Src kinase

P41240

cyl

 

 

 

 

CSK

C-terminal Src kinase

P41240

 

 

 

 

 

DYRK1A

dual specificity tyrosine-phosphorylation

Q13627

 

 

regulated kinase 1A

 

 

 

 

 

 

FERM

Four-one (band 4.1), Ezrin, Radixin, Moesin

 

 

 

domain

 

 

 

 

 

 

FES

feline sarcoma (Snyder–Theilen feline

P07332

FPS

 

sarcoma virus)

 

 

 

 

 

 

Continued

536

TCR, BCR, Soluble Tyrosine Kinases and NFAT

Abbreviation

Full name/description

SwissProt

Other names, OMIM

 

 

entry

links

 

 

 

 

FRK

Fyn-related protein kinase

P42685

nuclear kinase Rak

 

 

 

 

GAS

gamma-interferon activated sequence

 

 

 

 

 

 

GSK3

glycogen synthase kinase-3 beta

P49841

 

 

 

 

 

IFN-

interferon alpha

P01562

 

 

 

 

 

IFNAR1

interferon alpha receptor-1

P17181

 

 

 

 

 

IFNAR2

interferon alpha receptor-2

P48551

 

 

 

 

 

IFN-

interferon gamma

P01579

 

 

 

 

 

IFNGR1

interferon gamma receptor1

P15260

 

 

 

 

 

IFNGR2

interferon gamma receptor2

P38484

 

 

 

 

 

IFN-

interferon lambda

Q8IU54

IL-29

 

 

 

 

IFR

interferon regulatory factors

 

 

 

 

 

 

IFR-9

interferon regulatory factor-9

Q00978

 

 

 

 

 

ISGF3

interferon-stimulated gene factor-3

 

 

 

 

 

 

JAK1

janus kinase-1

P23458

 

 

 

 

 

LAT

linker of activated T cells

O43561

pp36

 

 

 

 

Lck

lymphocyte cell-specific protein kinase

P06239

 

 

 

 

 

MAGUK

membrane associated guanylate kinase

 

 

 

domain

 

 

 

 

 

 

NFAT1

nuclear factor of activated T cells cytosolic

Q13469

NFATC2

 

component

 

 

 

 

 

 

NFAT2

nuclear factor of activated T cells nuclear

O05644

NFATC1

 

component

 

 

 

 

 

 

PIAS-1

protein inhibitor of activated STAT protein-1

O75925

 

 

 

 

 

PKC

protein kinase C theta

Q04759

 

 

 

 

 

PLC

phospholipase C gamma

P19174

 

Continued

537

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