
- •The family of non-receptor protein tyrosine kinases
- •T-cell receptor signalling
- •More than one lymphocyte receptor must be engaged to ensure activation
- •T cell receptor signal-complex formation
- •Down-regulation of the TCR response
- •The lipid raft hypothesis
- •Signalling through interferon receptors
- •Alternative signalling pathways
- •Down-regulation of the JAK-STAT pathway
- •Nuclear dephosphorylation and recycling of STATs
- •STAT signalling without phosphorylation
- •Oncogenes, malignancy, and signal transduction
- •Viral oncogenes
- •Non-viral oncogenes
- •Essay: Non-receptor protein tyrosine kinases and their regulation
- •References

Signal Transduction
A number of these mutated proteins operate in the early stages of tyrosine kinase signal transduction pathways. Cells may be transformed as a consequence of hypersecretion of growth factors, expression of variant forms of PTKs, over-expression of SH2/SH3-containing adaptor proteins, overexpression of serine/threonine protein kinases, or expression of variants of the small GTPases or their accessory proteins. At the downstream end of the signal transduction pathway, variants of transcription factors also act as potent cell transformers. Although tyrosine kinase phosphorylation accounts for only about 5% of total cellular phosphorylation activity, it has a key position in many signal transduction pathways and it is probably for this reason that the incidence of these genes in malignancy is so high (see Table 17.5).
A good example of cell transformation related to aberrant PTK activity is the role of JAK2 in acute lymphoblastic leukaemia (ALL). This is the most common childhood cancer of pre-B cell origin. These cells rely on paracrine or autocrine cytokine stimulation in order to proliferate and survive. Forms of this disease that are more resistant to chemotherapy express a constitutively activated mutant of JAK2.64 Apparently, this serves as a survival signal for these cells making them insensitive to the damage inflicted on DNA by chemotherapy which would normally induce apoptosis.65 Another example is Bcr-Abl, the cause of chronic myelogenous leukaemia (CML). This is a fusion protein caused by somatic reciprocal translocation between (paternal) chromosome 9 and (maternal) chromosome 22. The kinase activity of the fusion product, carried by Abl, is deregulated; we return to this topic in Chapter 23.
Essay: Non-receptor protein tyrosine kinases and their regulation
The nrPTKs comprise a large family with diverse roles in the control of cell proliferation, differentiation and death. Some are widely expressed; others are
Table 17.4 Families of non-receptor protein tyrosine kinases
ABL |
ACK |
CSK |
FAK |
FES |
FRK |
JAK |
SRC-A |
SRC-B |
TEC |
SYK |
|
|
|
|
|
|
|
|
|
|
|
ABL1 |
ACK1 |
CSK |
FAK |
FER |
BRK |
JAK1 |
FGR |
BLK |
BMX |
SYK |
|
|
|
|
|
|
|
|
|
|
|
ARG |
TNK1 |
MATK |
PYK2 |
FES |
FRK |
JAK2 |
FYN |
HCK |
BTK |
ZAP70 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SRMS |
JAK3 |
SRC |
LCK |
ITK |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
TYK2 |
YES1 |
LYN |
TEC |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
TXK |
|
|
|
|
|
|
|
|
|
|
|
|
532

TCR, BCR, Soluble Tyrosine Kinases and NFAT
restricted to particular tissues. Their early classification was dominated by the discovery of pp60src, to the extent that the major group of kinases was simply known as the Src family. There are at least 10 known subfamilies of nonreceptor PTKs (see Figure 17.1 and Table 17.4).
The Src family kinases all share a similar structure. A unique chain at the N-terminus is followed by SH3 and SH2 domains (actually, the very archetypes of these domains that are so widely expressed) followed by a kinase domain and short tail at the C-terminus. Many Src kinases function by association with macromolecular signalling complexes assembled at membrane sites. Membrane targeting may be promoted by the unique N-terminal domain. Within the Src family, Src itself (pp60c–src), Fyn, Lyn, and Yes are myristoylated at the N-terminus. This provides the opportunity for membrane attachment that may be strengthened by palmitoylation at a nearby cysteine. Similarly,
Table 17.5 Components of tyrosine kinase signal transduction cascades manifested as cellular or viral oncogenes: These oncogenes are gain-of-function mutants of the wild-type proteins, such as receptor tyrosine kinases, adaptor proteins, or guanine exchange factors. Serine or threonine protein kinases can also acts as oncogenes, but in comparison with tyrosine protein kinases their contribution is relatively modest
Receptor |
Non-receptor |
Serine/threonine |
SH2/SH3 |
Nucleotide |
GTPase |
tyrosine |
tyrosine |
protein kinase |
adaptor |
exchange |
|
protein kinase |
protein kinase |
|
|
factor |
|
|
|
|
|
|
|
Bek |
Abl |
Akt/PKB |
Crk |
Bcr |
H-Ras |
|
|
|
|
|
|
Eck |
Blk |
Cot |
Nck |
Dbl |
K-Ras |
|
|
|
|
|
|
Elk |
Fgr |
Mos |
|
Ost |
N-Ras |
|
|
|
|
|
|
Eph |
Fsp |
Pim |
|
Tiam |
|
|
|
|
|
|
|
ErbB |
Fyn |
Raf |
|
Vav |
|
|
|
|
|
|
|
Flg |
Hck |
|
|
|
|
|
|
|
|
|
|
Fms |
Jak |
|
|
|
|
|
|
|
|
|
|
Kit |
Lck |
|
|
|
|
|
|
|
|
|
|
Met |
Lyn |
|
|
|
|
|
|
|
|
|
|
Neu |
Src |
|
|
|
|
|
|
|
|
|
|
Ret |
Yes |
|
|
|
|
|
|
|
|
|
|
TrkA |
|
|
|
|
|
|
|
|
|
|
|
TrkB |
|
|
|
|
|
|
|
|
|
|
|
TrkC |
|
|
|
|
|
|
|
|
|
|
|
533

Signal Transduction
For historical reasons the residues of human c-Src were numbered according to the sequence of chicken c-Src. Thus residues 83–533 (chicken numbering) correspond to 86–536 in humans. We have used human numbering here.
members of the Btk/Tec family may become membrane-associated through their PH domains which can bind polyphosphoinositide lipids. Other nonreceptor PTKs are recruited to their sites of action through the association of their SH2 domains with phosphotyrosine residues present in their targets. Regardless of their location, most Src family kinases are held in an inactive state by an intramolecular interaction that links a phosphorylated tyrosine in the C-terminus with the N-terminal SH2 domain.
The three-dimensional structure of human c-Src in its inactive and active forms is shown in Figure 17.12. The catalytic machinery is contained within the kinase domain, while control is exerted through its interaction with the adjacent structures. The elements that direct the regulation are the SH2 and SH3 domains. pY530 provides an intramolecular binding site for the SH2 domain. In its normal inactive conformation, the SH2 domain binds to pY530 so allowing Src to adopt a compact, closed conformation in which the SH3 and SH2 domains are packed against the kinase domain. This is
achieved through the interaction of the SH3 domain with the chain that links the SH2 domain and the small kinase lobe. This linker adopts a left-handed helical conformation (a type II polyproline helix, although there is only one proline residue) that binds the SH3 domain on the one side and through hydrophobic interactions, the small lobe on the other. Thus the SH2 and SH3 domains pack against the kinase domain. This distorts the small lobe, impedes access to the cleft, and causes an outward rotation of the C-helix in the small lobe.
Activation follows events that destabilize the compact conformation. Lacking an isoleucine at pY 3, the sequence motif surrounding pY530 is not optimal for SH2 binding. This makes pY530 more accessible to tyrosine phosphatases as well as to competing SH2 domains of other proteins. Both events may lead to activation of Src, because it removes the inhibitory clamp of the
SH2 and SH3 domains. These two domains, together with the linker, then flip out, allowing the kinase domain to relax from its distorted form and for
autophosphorylation at Y419 in the activation segment, rendering the protein kinase catalytically competent.
The major suppressor of Src activation is Csk (c-Src kinase), itself a member of the Src family. Csk has no C-terminal tyrosine residue and no lipid modification and in consequence it is both constitutively active and confined to the cytosol. Its target is the Src C-terminal tyrosine (Y530). How does this cytosolic enzyme interact effectively with the plasma membrane-associated Src? It seems likely that a transmembrane docking protein Cbp66 recruits Csk through an interaction between the SH2 domain
of Csk and a phosphotyrosine on Cbp (see Figure 17.13). Cbp and Src are both
534

TCR, BCR, Soluble Tyrosine Kinases and NFAT
Fig 17.13 Regulation of Src kinase activity by Csk and CD45.
Csk is recruited in the TRC signalling complex through interaction of its SH2 domain with the transmembrane phosphoprotein Cbp. Src is inactivated by Csk through tyrosine phosphorylation of its C-terminal
tail (1). A tyrosine phosphatase removes the phosphate from the tyrosine in the activation segment
(2). Inactive Src can be reactivated by CD45 which removes the phosphate in the C-terminus (Pc) (3).
Autophosphorylation of the activation segment completes the process (PA)
(4). This mode of regulation is a good example of how retro-control can limit activity. Active Src phosphorylates Cbp causing de-activation. Loss
of Src activity and subsequent dephosphorylation of Cbp re-initiates a cycle of Src activation. Many oncogenic tyrosine kinases have the effect of obliterating such oscillations because they are unable to adopt their inactive state.
localized in lipid rafts. The inhibitory action is linked to the removal of the phosphate from the activation segment of Src by a phosphatase of unknown identity. Activation of Src might then initially involve the dephosphorylation of Cbp by a tyrosine phosphatase, amongst which CD45 is a good candidate. CD45 also removes the phosphate from the pY530, thus allowing autoactivation of Src.
535

Signal Transduction
List of abbreviations
Abbreviation |
Full name/description |
SwissProt |
Other names, OMIM |
|
|
entry |
links |
|
|
|
|
Abl-c |
Abelson murine leukaemia viral oncogene |
P00519 |
TNK1 (tyrosine non- |
|
homologue |
|
receptor kinase) |
|
|
|
|
ACK1 |
activated Cdc42 protein kinase |
Q07912 |
|
|
|
|
|
BTK |
Bruton tyrosine kinase (Bruton’s |
Q06187 |
|
|
agammaglobulinaemia) |
|
|
|
|
|
|
calcineurin A |
|
Q08209 |
PP2B, PPP3 catalytic |
|
|
|
subunit a |
|
|
|
|
calcineurin-B1 |
|
P63098 |
PP2B, PPP3 regulatory |
|
|
|
subunit 1 |
|
|
|
|
Calmodulin |
|
P62158 |
CaM |
|
|
|
|
CARD |
caspase recruiting domain |
|
|
|
|
|
|
CARMA1 |
CARD-containing MAGUK protein-1 |
Q9BXL7 |
CARD11 |
|
|
|
|
Cbp |
Csk-binding protein |
Q9NWQ8 |
PAG1 |
|
|
|
|
CD3 -chain |
cluster of differentation-3 epsilon chain (TCR) |
P07766 |
|
|
|
|
|
CD3 -chain |
cluster of differentiation-3 zeta chain (TCR) |
P20963 |
CD247, TCR z-chain |
|
|
|
|
CD4 |
cluster of differentiation-4 |
P01730 |
|
|
|
|
|
CD45 |
cluster of differentation-45 |
P08575 |
OMIM:608971 |
|
|
|
|
CIB4 |
calcium and integrin binding family |
A0PJX0 |
|
|
member 4 |
|
|
|
|
|
|
CK1 |
casein kinase-1 |
P48729 |
|
|
|
|
|
CSK |
c-Src kinase |
P41240 |
cyl |
|
|
|
|
CSK |
C-terminal Src kinase |
P41240 |
|
|
|
|
|
DYRK1A |
dual specificity tyrosine-phosphorylation |
Q13627 |
|
|
regulated kinase 1A |
|
|
|
|
|
|
FERM |
Four-one (band 4.1), Ezrin, Radixin, Moesin |
|
|
|
domain |
|
|
|
|
|
|
FES |
feline sarcoma (Snyder–Theilen feline |
P07332 |
FPS |
|
sarcoma virus) |
|
|
|
|
|
|
Continued
536

TCR, BCR, Soluble Tyrosine Kinases and NFAT
Abbreviation |
Full name/description |
SwissProt |
Other names, OMIM |
|
|
entry |
links |
|
|
|
|
FRK |
Fyn-related protein kinase |
P42685 |
nuclear kinase Rak |
|
|
|
|
GAS |
gamma-interferon activated sequence |
|
|
|
|
|
|
GSK3 |
glycogen synthase kinase-3 beta |
P49841 |
|
|
|
|
|
IFN- |
interferon alpha |
P01562 |
|
|
|
|
|
IFNAR1 |
interferon alpha receptor-1 |
P17181 |
|
|
|
|
|
IFNAR2 |
interferon alpha receptor-2 |
P48551 |
|
|
|
|
|
IFN- |
interferon gamma |
P01579 |
|
|
|
|
|
IFNGR1 |
interferon gamma receptor1 |
P15260 |
|
|
|
|
|
IFNGR2 |
interferon gamma receptor2 |
P38484 |
|
|
|
|
|
IFN- |
interferon lambda |
Q8IU54 |
IL-29 |
|
|
|
|
IFR |
interferon regulatory factors |
|
|
|
|
|
|
IFR-9 |
interferon regulatory factor-9 |
Q00978 |
|
|
|
|
|
ISGF3 |
interferon-stimulated gene factor-3 |
|
|
|
|
|
|
JAK1 |
janus kinase-1 |
P23458 |
|
|
|
|
|
LAT |
linker of activated T cells |
O43561 |
pp36 |
|
|
|
|
Lck |
lymphocyte cell-specific protein kinase |
P06239 |
|
|
|
|
|
MAGUK |
membrane associated guanylate kinase |
|
|
|
domain |
|
|
|
|
|
|
NFAT1 |
nuclear factor of activated T cells cytosolic |
Q13469 |
NFATC2 |
|
component |
|
|
|
|
|
|
NFAT2 |
nuclear factor of activated T cells nuclear |
O05644 |
NFATC1 |
|
component |
|
|
|
|
|
|
PIAS-1 |
protein inhibitor of activated STAT protein-1 |
O75925 |
|
|
|
|
|
PKC |
protein kinase C theta |
Q04759 |
|
|
|
|
|
PLC |
phospholipase C gamma |
P19174 |
|
Continued
537