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Immunodiagnostic and Molecular Techniques 625

Table 11.5 Immunological and Molecular Diagnosis of Parasitoses in Humans: A Selection of Techniques and Established Methods

Parasitosis

Methods

 

 

 

 

 

Antibody assay1

Antigen assay

DNA analysis

 

African trypanosomosis

IFAT, ELISA, HA

 

PCR (blood)

(sleeping sickness)

 

 

 

 

 

American trypanosomosis

IFAT, ELISA, HA

 

PCR (blood)

(Chagas disease)

 

 

 

 

 

Leishmaniosis

 

 

 

 

 

& visceral

IFAT, ELISA

 

PCR (blood, lymph

 

 

 

node aspirate)

& cutaneous/mucocuta-

(IFAT, ELISA)

 

PCR (biopsy)

neous

 

 

 

 

 

Giardiosis

 

IFAT, ELISA (stool)

 

 

 

Amebosis (Entamebosis)

 

 

 

 

 

& intestinal

ELISA, IFAT

ELISA (stool)

PCR (stool)

& extraintestinal

ELISA, IFAT

 

 

 

 

Toxoplasmosis

ELISA, IFAT, SFT,

 

PCR (amniotic

 

CFT, ISAGA, WB,

 

fluid, placenta,

 

IgG avidity test

 

etc.)

Cryptosporidiosis

 

ELISA, IFAT (stool)

 

 

 

Malaria

IFAT

Rapid test

PCR (blood)

 

 

(blood)2

 

 

 

Microsporosis

 

 

PCR (stool, urine,

 

 

 

etc.)

Schistosomosis

IFAT, ELISA

 

 

 

 

Fasciolosis

IFAT, ELISA

ELISA (stool)

 

 

 

Opisthorchiosis

ELISA

 

 

 

 

Paragonimosis

ELISA, HA

 

 

 

 

Echinococcosis

ELISA, IFAT, WB

 

PCR

 

 

 

(metacestodes)

Cysticercosis

WB, ELISA

 

 

11

Taeniosis

 

ELISA (stool)

PCR (proglottids)

 

Toxocarosis

ELISA, WB

 

 

 

 

 

 

 

 

Filariosis

ELISA, IFAT

ELISA (serum)

 

 

 

 

 

 

 

 

 

626 Laboratory Diagnosis of Parasitoses

Table 11.5 Continued: Immunological and Molecular Diagnosis of Parasitoses in

Humans

Parasitosis

Methods

 

 

Antibody assay1 Antigen assay

DNA analysis

Trichinellosis

ELISA, IFAT, WB

PCR (biopsy)

Strongyloidosis

ELISA, IFAT, WB

 

Ascariosis

ELISA

 

Anisakiosis

ELISA

 

1In parentheses: techniques with low reliability.

2Rapid test to detect Plasmodium-specific antigens or lactate dehydrogenase. Abbreviations: ELISA: enzyme-linked immunosorbent assay, HA: hemagglutination, IFAT: indirect immunofluorescent antibody test, ISAGA: immunosorbent agglutination assay, CFT: complement fixation test , PCR: polymerase chain reaction, SFT: Sa- bin-Feldman test, WB: Western blot (immunoblot).

11

VI

Organ System

Infections

629

Medical microbiology explores how infectious diseases originate and develop. The focus of this branch of the life sciences is of course on infective pathogens, the causes of infections. This explains why the taxonomy of these microorganisms determines the structure of textbooks of medical microbiology, and this one is no exception. This approach does not, however, satisfy all the requirements of clinical practice. The practicing physician is confronted with a pathological problem affecting a specific organ or organ system, and therefore might well find good use for a brief reference tool covering the pathogenic agents that potentially affect specific organs and systems.

Medical microbiology must address two tasks: 1. describing the origins and development of an infection and 2. obtaining a laboratory diagnosis of the resulting disease that is of immediate clinical relevance to patient treatment. Chapter 12 of this book was written to help bridge the gap between basic microbiological science and the demands of medical practice. Concise information on etiology and laboratory diagnosis has been grouped in tabular form in 12 sections corresponding to the most important organs and organ systems. Infections that affect more than one organ system are listed with the system that is affected most severely and/or most frequently or in which the disease manifests most clearly. The pathogens in question are also listed with the other organ manifestations. In the tables, the most frequent causative pathogens in each case are printed in bold letters. Readers are referred to textbooks on internal medicine or specialist literature on infective diseases for exhaustive information on clinical aspects extending beyond etiology and laboratory diagnosis (see references at the end of the book). The descriptions of the diagnostic procedures used to clarify the different infections had to be kept concise in accordance with the tabular format. Since each laboratory offers its own specific set of testing techniques, a physician’s choices are defined and limited by what is feasible and available in a given

case. This applies in particular to the many different antibody assays now 12 available (= serology). The most important serological tests are listed together

with the relevant pathogens in the respective chapters.

630 12 Etiological and Laboratory Diagnostic Summaries in Tabular Form

12Etiological and Laboratory Diagnostic Summaries in Tabular Form

FH Kayser, J Eckert, and KA Bienz

Table 12.1 Upper Respiratory Tract

Infection

Most important

Laboratory diagnosis

 

pathogens*

 

 

 

 

Rhinitis (common cold)

Rhinoviruses

Laboratory diagnosis not

 

Coronaviruses

recommended

 

Influenzaviruses

 

 

Adenoviruses

 

 

 

 

Sinusitis

Streptococcus pneumoniae

Microscopy and culturing

 

Haemophilus influenzae

from sinus secretion/pus

 

Staphylococcus aureus

(punctate) or sinus lavage

 

Moraxella catarrhalis

 

 

(children)

 

 

Streptococcus pyogenes

 

 

rarely: anaerobes

 

 

Influenzaviruses

Serology

 

Adenoviruses

 

 

Rhinoviruses

Laboratory diagnosis not

 

Coronaviruses

recommended

 

 

 

Pharyngitis/tonsillitis/

 

 

gingivitis/stomatitis

 

 

Viruses

Adenoviruses

Isolation, if required,

 

Influenzaviruses

or direct detection in

 

RS virus

pharyngeal lavage or

 

Rhinoviruses

nasal secretion; serology

 

Coronaviruses

 

Herpangina

Coxsackie viruses, group A

Isolation if required

Gingivitis/stomatitis

Herpes simplex virus

Isolation

 

 

Serology

12

 

 

 

Upper Respiratory Tract 631

 

 

 

Table 12.1 Continued: Upper Respiratory Tract

 

 

 

 

 

Infection

Most important

Laboratory diagnosis

 

pathogens*

 

 

 

 

 

Infectious mononucleosis

Epstein-Barr virus (EBV)

Serology

 

Cytomegalovirus (CMV)

Culture from pharyngeal

 

 

 

lavage and urine; serology

Bacteria

Streptococcus pyogenes,

 

rarely: streptococci of

 

groups B, C, or G

Culture from swab; rapid antigen detection test for A-streptocci in swab material if required

Plaut-Vincent angina

Treponema vincentii +

Microscopy from swab

 

mixed anaerobic flora

 

Acute necrotic ulcerous

Treponema vincentii +

Microscopy from swab

gingivostomatitis

mixed anaerobic flora

 

Diphtheria

Corynebacterium diphtheriae Culture from swab

 

 

 

Laryngotracheobronchitis

Parainfluenza viruses

Isolation from pharyngeal

(croup)

Influenza viruses

lavage or bronchial

 

Respiratory syncytial virus

secretion, combined with

 

Adenoviruses

serology

 

Enteroviruses

 

 

Rhinoviruses

Laboratory diagnosis not

 

 

recommended

 

 

 

Epiglottitis

Haemophilus influenzae

Blood culture. Culture from

 

(usually serovar “b”)

swab (caution: respiratory

 

More rarely:

arrest possible in taking

 

Streptococcus pneumoniae,

the swab)

 

Staphylococcus aureus,

 

 

Streptococcus pyogenes

 

 

 

 

* The pathogens that occur most frequently are in bold type.

12

632 12 Etiological and Laboratory Diagnostic Summaries in Tabular Form

Table 12.2 Lower Respiratory Tract

 

 

Infection

Most important

Laboratory diagnosis

 

 

 

pathogens

 

 

 

 

 

 

 

 

Acute bronchitis.

Respiratory syncytial virus

Serology, combined with

 

 

Acute bronchiolitis

Parainfluenza viruses

isolation from pharyngeal la-

 

 

(small children)

Type A influenza viruses

vage or bronchial

 

 

 

Adenoviruses

secretion

 

 

 

Rhinoviruses

Not recommended

 

 

 

Mycoplasma pneumoniae

Serology

 

 

 

Chlamydia pneumoniae

Serology if required

 

 

 

 

 

 

 

Pertussis

Bordetella pertussis

Culture; special material

 

 

 

 

sampling and transport

 

 

 

 

requirements

 

 

 

 

Direct immunofluorescence in

 

 

 

 

smear

 

 

 

 

 

 

 

Acute exacerbation

Streptococcus pneumoniae

Culture from sputum or

 

 

of “chronic obstructive

Haemophilus influenzae

bronchial secretion

 

 

pulmonary disease”

Moraxella catarrhalis

 

 

 

(COPD)

 

 

 

 

 

 

 

 

 

Tuberculosis

Mycobacterium tuberculosis

Microscopy and culture

 

 

 

other mycobacteria

(time requirement:

 

 

 

 

3–6–8 weeks)

 

 

 

 

 

 

 

Pneumonia

Parainfluenza viruses

Serology, combined

 

 

Viruses (15–20%)

(children)

with isolation from

 

 

(usually community-

Respiratory syncytial virus

pharyngeal lavage or

 

 

acquired)

(children)

bronchial secretion or

 

 

 

Influenza viruses

antigen detection in nasal

 

 

 

Adenoviruses

secretion

 

 

 

Epstein-Barr virus (EBV)

Serology

 

 

 

Cytomegalovirus (CMV)

Serology, combined with

 

 

 

(in transplant patients)

isolation from pharyngeal

 

 

 

Measles virus

lavage or bronchial secretion;

 

 

 

 

cell culture if CMV pneumonia

 

 

 

 

suspected. Antigen or DNA

12

 

 

 

assay.

 

 

 

Serology

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Lower Respiratory Tract 633

 

 

 

Table 12.2 Continued: Lower Respiratory Tract

 

 

 

 

 

 

 

Infection

Most important

Laboratory diagnosis

 

pathogens

 

 

 

 

 

 

 

 

Pulmonary hantaviruses

Serology

 

(USA)

 

 

 

Enteroviruses

Isolation from pharyngeal

 

 

 

lavage or bronchial

 

 

 

secretion

 

Rhinoviruses

Laboratory diagnosis not

 

 

 

recommended

Bacteria (80–90%)

Streptococcus pneumoniae

Microscopy and culturing

“Community-acquired

(30%)

 

from expectorated

pneumonia”

Haemophilus influenzae (5%)

sputum, or better yet from

 

Staphylococcus aureus (5%)

transtracheal or bronchial

 

Klebsiella pneumoniae

aspirate, from bronchoalveolar

 

Legionella pneumophila

lavage or biopsy material.

 

Mixed anaerobic flora

If anaerobes are suspected

 

(aspiration pneumonia)

use special transport vessels

 

Mycoplasma pneumoniae

Serology

 

(10%)

 

 

 

 

Coxiella burnetii

Serology

 

Chlamydia psittaci

Serology: CFT can detect

 

 

 

only antibodies to genus.

 

 

 

Microimmunofluorescence

 

 

 

(MIF) species-specific

 

Chlamydia pneumoniae

Serology: MIF

“Hospital-acquired

Enterobacteriaceae

Laboratory procedures

pneumonia”

Pseudomonas aeruginosa

see above at “community-

 

Staphylococcus aureus

acquired pneumonia”

Fungi

Aspergillus spp.

Microscopy and culture,

 

Candida spp.

preferably from transtracheal

 

Cryptococcus neoformans

or bronchial aspirate,

 

Histoplasma capsulatum

bronchoalveolar lavage or

 

Coccidioides immitis

lung biopsy. Serology often

 

Blastomyces spp.

possible

 

Mucorales

(see Chapter 5)

 

 

 

 

 

12

634 12 Etiological and Laboratory Diagnostic Summaries in Tabular Form

Table 12.2 Continued: Lower Respiratory Tract

Infection

Most important

Laboratory diagnosis

 

 

pathogens

 

 

 

 

 

 

 

Pneumocystis carinii

Pathogen detection in

 

 

(Pneumocystis carinii

“induced” sputum or

 

 

pneumonia (PCP) frequent

bronchial lavage by means of

 

 

in AIDS patients)

microscopy, immunofluores-

 

 

 

cence or DNA analysis

Protozoa

Microspora

As for P. carinii, DNA detection

 

 

 

(PCR)

 

 

Toxoplasma gondii

Serology

Helminths

Echinococcus spp.

Serology

 

 

Schistosoma spp.

Serology; worm eggs in stool

 

 

Toxocara canis (larvae)

Serology

 

 

Ascaris lumbricoides (larvae)

Serology (specific IgE)

 

 

 

(worm eggs in stool)

 

 

Paragonimus spp.

Worm eggs in stool and

 

 

 

sputum; serology

 

 

 

 

SARS (Severe Acute

SARS Corona Virus

Reverse transcriptase PCR

Respiratory Syndrome)

 

(RT-PCR) in respiratory tract

 

 

 

specimens (swabs, lavage

 

 

 

etc.).

 

 

 

Serology (EIA).

 

 

 

 

Empyema

Streptococcus pneumoniae

Microscopy and culture from

 

 

Staphylococcus aureus

pleural pus specimen

 

 

Streptococcus pyogenes

 

 

 

Numerous other bacteria are

 

 

 

potential pathogens

 

 

 

 

 

Pulmonary abscess

Usually endogenous

Microscopy and culture from

Necrotizing pneumonia infections with Gram-

transtracheal or bronchial

 

 

negative/Gram-positive

aspirate, bronchoalveolar

 

 

mixed anaerobic flora

lavage or lung biopsy.

 

 

Aerobes also possible

Transport in medium for

 

 

 

anaerobes

12

 

Candida spp.

Microscopy and culture,

 

Aspergillus spp.

serology as well if required

Mucorales