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178
R. C. Sperandio et al.
temic approach until 2018, when the therapeutic arsenal against HCC was broadened with the approval of lenvatinib as rst-line, after demonstrating non-inferiority versus sorafenib in the phase III REFLECT study [10]. Moreover, since 2017, a plethora of anti-angiogenic agents were approved in second-line settings, with overall survival improvements ranging from 1.6 to 2.8months versus pla­cebo; subsequent options include regorafenib [11], ramuci­rumab [12] and cabozantinib [13]. Nevertheless, the impact of these agents is modest, and no reliable biomarker for selection of patients has been identied. Therefore, progress is needed and effective therapy against HCC remains an unmet need.
With the recognition of cancer as an immunogenic dis­ease, the role of immune modulation as a part of oncologic management was explored. In the early 2000s, local and sys­temic immunotherapy with interferon [14] and cytokines such as IL-12 [15] were studied, with poor results. More recently, cancer treatment was revolutionized by the intro­duction of immune checkpoint inhibitors (ICI) [16]. This group of agents is composed by immunomodulatory anti­bodies with the primary function of blocking immune inhibi­tory pathways and therefore unleashing the body’s response against malignancies, with particular success in melanoma [17], renal cell carcinoma [18], and non-small cell lung can­cer [19]. Strikingly, ICI has demonstrated potential for long­term disease control and even cure in metastatic chemotherapy-refractory solid tumors [20]. In light of the limited treatment options and an improved understanding of liver immune biology, ICI’s use soon expanded to HCC.In this chapter, we will review the rationale, efcacy data and future perspectives regarding the use of ICI for HCC.
21.2 Rationale andtheEvolving Role
ofImmunotherapy inCancer Treatment
A better understanding of how innate and adaptive immune surveillance interplay with cancer development has led to major therapeutic advances across many cancer types [21]. The intricated mechanisms underlying this process initiate with the immune system’s ability to recognize self and non­self antigens. The interface between the immune and tumor cells is mediated by antigen-presenting cells (APC) and components of major histocompatibility complex (MHC) classes I and II, responsible for recognition and consequent activation/inhibition of the immune response, comprising the “immune synapse”. The primary connection between T cells and APC is through the MHC and the T cell receptor (TCR)
complexes [22]. To ensure meticulous regulation of this pro­cess, the initial signal depends on additional costimulatory and co-inhibitory molecules, collectively known as “immune checkpoints”. These bindings may produce, respectively, two opposing effects as a nal result: immune activation through effector T cells; or immune evasion through increased participation of regulatory and suppressing cells [23]. These pathways create a dynamic balance between car­cinogenesis and immune destruction, exemplifying a phe­nomenon called “cancer immunoediting”—a relationship described in three phases: elimination, equilibrium, and escape. The latter is characterized by tumor growth that is no longer blocked by adaptive immunity and is able to cause clinical manifestations of disease [24]. The most representa­tive and studied negative immune checkpoints to date are cytotoxic T-lymphocyte associated protein 4 (CTLA-4), programmed cell-death receptor (PD-1) and its ligand pro­grammed cell-death ligand 1 (PD-L1) (Table 21.1).
CTLA-4 blockade is a hallmark to immunotherapy as it represents the rst-ever approved drug of ICI class—ipilim­umab [25]. CTLA-4 is constitutively expressed in regulatory T cells, and by activated CD4+ and CD8+ lymphocytes. CTLA-4 competitively binds to CD80 (also known as B7-1) and CD86 (B7-2), thus decreasing the costimulatory signal of CD28 on APCs [26]. Upregulation of CTLA-4 occurs mediated by pro-effector cytokines IL-12, IFN-gamma and the degree of TCR activation, which leads to a feedback inhi­bition loop on effector T cells and, consequently, impairment of the immune response [27].
PD-1 is expressed in lymphocytes (T cells, B cells and NK cells) and is paramount for immunomodulation in tumor microenvironment. PD-1 is a co-inhibitory receptor that binds to the PDL-1 (also known as B7-H1 or CD274) and PDL-2 (B7-H2 or CD273), promoting peripheral T effector cell exhaustion [28]. While PDL-2 is mostly found in hema­topoietic cells, PDL-1 is expressed across many tissues, including tumor cells. PDL-1 expression in the tumor micro­environment is also enhanced by IL-12 and IFN-gamma, highlighting its role as a physiological brake to effector T cells and as a mechanism for immune evasion [29, 30]. Chronic presented antigens as seen in chronic viral infec­tions or neoplastic clones may induce feedback inhibition of effector T cells, in a process called “immune exhaustion” [23].
Table 21.1 Immune checkpoint inhibitors
Anti-PD1 Anti-PDL-1 Anti-CTLA-4 Pembrolizumab Atezolizumab Ipilimumab Nivolumab Avelumab Tremelimumab Cemiplimab Durvalumab
21 Immune-Checkpoint Inhibitors inHepatocellular Carcinoma
179
21.3 The Unique Microenvironment andImmune System oftheLiver
ICI have yielded better responses when used in solid tumors with high mutational burden cancers, such as melanoma and non-small cell lung cancer. In such tumors, there is a pre­dicted higher burden of neoantigens to be recognized by immune effector cells. Most cases of HCC arise in the back­ground of a chronically inamed liver, with underlying cir­rhosis. A correlation between an inamed tumor microenvironment and more neoantigens leading to higher IFN-gamma and PD-L1 expression has suggested—in a broad analysis of over 100,000 cancer genomes, the tumor mutational burden for HCC was found to be moderate [31].
Due to unique features of the hepatic tissue, such as self­tolerance, the immunological landscape of HCC is a key fea­ture to the effectiveness of this class of agents. There is a myriad of cells found in HCCs, which include malignant hepatocytes, endothelial cells and inltrating immune cells such as dendritic cells, lymphocytes, macrophages and monocytes (Fig. 21.1). The immune microenvironment in HCC is also characterized by upregulation and overexpres­sion of PD-1 in intrahepatic lymphocytes, PD-L1 and PD-L2 in Kupffer cells, liver sinusoidal endothelium and leucocytes [32].
Recent advances in gene proling and identication of gene signatures and other molecular features allow a pheno­type classication that intend to better select subsets of patients which are more likely to respond. There has been evidence for classifying microenvironment-based immune subtypes in distinct phenotype groups. A study found that 25% of HCC samples show features of inammatory response with overexpression of PD-1 and PD-L1. This so­called “Immune Class” is subdivided in two groups accord­ingly to immune status: (1) active (~65%, with overexpression of adaptive immune response genes) or (2) exhaustion of immunological activity (~35%, with predominance of immu­nosuppressive features such as TGF-ß expression and M2 macrophages inltration [33].
21.4 Single-Agent Immune Checkpoint
Inhibitors Trials
Efcacy and safety of ICI in treating HCC were initially assessed in single-arm trials. Published in 2017, the CheckMate-040 [34] was a phase I/II study that evaluated nivolumab (an anti-PD1 ICI) after sorafenib failure in 262 patients. Results were promising, with an overall response rate of 20%, and disease control rate of 64%. The median
Fig. 21.1 The complex and multi-faceted functional interactions guid-
ing cancer immune tolerogenesis in hepatocellular carcinoma. Cellular and functional heterogeneity of the HCC tumour microenvironment. Reused with permission from: Pinato DJ, Guerra N, Fessas P, et al.
Immune-based therapies for hepatocellular carcinoma. Oncogene. 2020;39(18):3620–3637. https://doi.org/10.1038/s41388- 020- 1249- 9. License at: http://creativecommons.org/licenses/by/4.0/
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progression-free survival was 4.0months, and the median duration of response was 9.9months, highlighting the ICI’s potential for long-term responses. Overall survival at 6months and at 9months were 83% and 74%, respectively, which compared favorably to published trials in the later line setting. Moreover, treatment was well tolerated, and only 3% of subjects had to discontinue treatment due to drug-related adverse events. A particular safety concern was the risk of immune-related hepatitis, but this event was rare and mostly low grade [35].
In 2018, the results of the single-arm phase II KEYNOTE-224 trial [36] were reported. In this study, 104 patients that had progressed on sorafenib were treated with pembrolizumab (an anti-PD-1 ICI). Overall response rate was 17%, and disease control rate 62%. Median time to response was 2.1months and median duration of response was not reached, with 77% of patients continuing to respond for 9 months. Median overall survival was 12.9 months. Similarly to nivolumab, only 3% of patients showed increased alanine aminotransferase concentration attribut­able to immune-mediated hepatitis, with no viral ares or further complications.
Unfortunately, larger conrmatory trials of single-agent anti-PD-1 ICI yielded disappointing results, both in rst- and second-line settings. KEYNOTE-240 [37] was a multicenter, randomized phase III study that assigned 413 patients to pembrolizumab or placebo as second-line therapy, after pro­gression to sorafenib. The trial was negative for the co­primary endpoints of overall survival and progression-free survival. Notwithstanding, secondary efcacy data was con­sistent with prior reports—response rate was 16.9, with median duration of response of 13.8 months. Regarding frontline therapy, CheckMate-459 [38] was a phase III trial comparing nivolumab versus sorafenib for 743 systemic­therapy naive patients with advanced HCC. This study has also failed to meet its primary endpoint of overall survival, with median overall survival of 16.4 months versus
14.8months for the nivolumab and sorafenib groups, respec­tively (HR 0.85; p=0.0522 not signicant). At 33months, overall survival rates were 29% for nivolumab and 21% for sorafenib. Grade 3–4 treatment-related adverse events were reported in 82 patients (22.3%) of the nivolumab group and in 180 patients (49.6%) of the sorafenib group.
There is a strong scientic rationale suggesting that com­bined VEGF/PD-L1 blockade may be benecial in a number of solid cancers, including HCC.It is recognized that HCC is a highly vascularized tumor [39], and the VEGF pathway plays a crucial role in exerting and maintaining an immuno­suppressive tumor microenvironment through several mech­anisms [40]. In May 2020, a combination therapy has become the new standard of care for advanced and unresectable HCC as the FDA approved atezolizumab (an anti-PD-L1 ICI) and bevacizumab (an anti-VEGF monoclonal antibody) as rst­line therapy. This approval followed results of the phase III IMbrave150 trial [41], which assessed the aforementioned combination versus sorafenib as a rst-line treatment in 501 previously untreated patients. Median overall survival was signicantly better for the combined therapy (NR vs 13months; HR 0.58, p <0.001), translating into an overall survival benet of 12% at 1year (67% vs 55%). Combination therapy also yielded longer progression-free survival (6.8 vs
4.3months, HR 0.59; p<0.001). Moreover, the combined therapy doubled the objective response rate (27% vs 12%). Importantly, authors also reported a benet in quality of life and physical/role functioning [42].
Further, a novel ICI combination has been approved in the later-line setting. In March 2020, the FDA granted acceler­ated approval to the combination of nivolumab plus ipilim­umab (an anti-CTLA-4 ICI) for previously treated advanced HCC patients, based on a cohort of the CheckMate-040 study [43]. Overall response rate was 33%, including four complete responses and 12 partial responses. More than 30% of responses persist for at least 24months, with median response duration of 17months. This combination was associated with higher occurrence of immune-related adverse events, requir­ing the use of steroids, including grade 3–4 increased levels of aspartate aminotransferase and lipase [44].
Currently, in 2020, there are multiple ongoing clinical tri­als assessing different combinatory schemes incorporating ICI—either in combination with other ICIs or with targeted­therapies—, and more approvals are anticipated in the near future.
21.6 ICIs Use intheNeoadjuvant
andAdjuvant Settings inResectableHCC

21.5 Combination Strategies

Despite the initial high expectations and relatively good response rates, ICI as single agents so far failed to demon­strate improvement in survival endpoints. Consequently, there has been a growing interest towards diversifying strate­gies and combining agents in order to improve efcacy (Fig.21.2).
The approval of ICIs for most malignancies initially took place in the context of advanced disease. More recently, ICI have been assessed in the management of earlier stages of cancer, and are approved for the (neo)adjuvant treatment of melanoma [45, 46] and non-small cell lung cancer [47]. Incorporating ICI earlier in HCC is of special interest as tumor recurrence is common and 5-year recurrence rates for resected HCC have been reported to be >70% [5].
a c
21 Immune-Checkpoint Inhibitors inHepatocellular Carcinoma
b
181
d
e
Fig. 21.2 General overview of immune-based therapies for HCC. (a)
Simultaneous inhibition of CTLA-4 and the PD-1 axis by monoclonal antibodies (brown and blue respectively). The effect of dual checkpoint blockade on T-cell immune reconstitution is demonstrated, with CTLA-4 acting mainly on T-reg cells and antigen-presenting cells, and PD-1 acting on effector CD8+ CTLs. (b) Schematic representation of synergy between anti-angiogenic therapy (green antibody) and PD-1/ PD-L1-targeted therapy. (c) Locoregional therapies, such as ablation and trans-arterial chemoembolisation are loco-regional inducers of immunogenic cell death and drive CD8+ cell inltration into the tumour microenvironment, providing a rationale for combined anti-PD-1 ther-
In the neoadjuvant setting, it is hypothesized that block­ing immune checkpoints preoperatively increases systemic T cell response by enhancing neoantigen presentation and T
apy. (d) Autologous T cell transfer involves exvivo activation of mixed T cell/NK cell populations by cytokines (i.e., CIK cells) and reinfusion into the patient with the intent of bypassing immune-evasion and elicit­ing an anti-tumour responses. (e) Anti-tumour vaccines against immunodominant peptides of oncofoetal proteins, such as AFP, GPC3 and hTERT, have been combined with exvivo activation of dendritic cells to promote effective antigen presentation. Reused with permission from: Pinato DJ, Guerra N, Fessas P, etal. Immune-based therapies for hepatocellular carcinoma. Oncogene. 2020;39(18):3620–3637. https://
doi.org/10.1038/s41388- 020- 1249- 9. License at: http://creativecom­mons.org/licenses/by/4.0/
NCT03383458) and pembrolizumab (KEYNOTE-937, NCT03867084), in addition to atezolizumab plus bevaci-
zumab randomized to placebo (Imbrave-050, NCT04102098). cell priming both at the primary tumor site and draining lymph nodes [48]. The resulting effect would be the elimina­tion of micrometastatic niches that are deposited far from the

21.7 Future Perspectives

resectable lesion, which is thought to be the cause of relapse.
An interim analysis of an ongoing phase II pilot trial of preoperative ipilimumab with or without nivolumab has demonstrated a pathological complete response of 29% (4 out of evaluable 14 patients), highlighting the promise of early ICI use. As expected, grade 3 or higher toxicities prior to surgery were more present at the combination arm [49]. Larger conrmatory trials are ongoing. Currently, adjuvant immunotherapy studies in HCC include ICI alone random­ized to placebo, including nivolumab (CheckMate-9DX,
Based on the new standard of care approved in 2020— atezolizumab plus bevacizumab—, the trend for the near future is towards evaluating diverse combination strategies, such as ICI with other ICI, or in conjunction with molecular targeted therapies such as multi-kinase inhibitors, or locore­gional therapies, among others. Despite great excitement regarding the introduction of a novel modality of treatment with immunotherapy after a long time with few and modest options of systemic therapy, there is still a signicant cohort
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of patients who do not respond to ICIs or combinations. Additionally, mechanisms of resistance—tumor intrinsic and extrinsic factors—are relevant and may play an important role in long-term follow-up of HCC patients. Moreover, inducing higher response rate is essential to improving out­come in unresectable HCC since it could downsize tumors to a resectable or transplantable stages and offer cure.
Notably, reliable predictive biomarkers that allow identi­cation and better selection of patients more likely of responding to therapy are currently lacking. There is a num­ber of candidates under investigation—both intratumoral and extratumoral biomarkers; such as PD-L1 expression, Tumor Mutational Burden (TMB), gene signatures, signaling path­ways, tumor microenvironment features such as inltrating lymphocytes. Circulating soluble factors such as cytokines, and immune cells, are other possible biomarkers which are currently under investigation [50]. Imaging predictors are also being assessed—recently, a signicant correlation between HCC stiffness at magnetic resonance elastography, presence of intratumoral T lymphocytes, overall survival and time to disease progression has been recently reported and warrants further validation [51].
In summary, the study of immunotherapy for HCC is an active area of interest and has led to the establishment of a new frontline standard of care for unresectable disease. However, survival for patients with advanced HCC is still suboptimal, and there remains a need for novel treatment strategies, highlighting that progress is particularly strenu­ous due to the challenges of treating patients with underlying cirrhosis.

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Molecularly Targeted Therapy inCholangiocarcinoma
AakashDesai andMiteshJ.Borad
22
Abstract
Biliary tract cancers (BTCs) are a heterogeneous group of aggressive malignancies of the liver and biliary tract. While traditional approaches for advanced disease patients have comprised cytotoxic therapies such as gem­citabine and cisplatin, next generation sequencing has revolutioned the eld and has cast growing appreciation of the molecular underpinnings of the disease. Towards this end, inhibitors of broblast growth factor receptor 2 (FGFR2) and isocitrate dehydrogenase 1 (IDH1) have yielded compelling data in pivotal clinical studies and subsequently garnered regulatory approval across a num­ber of geographies. Enhancing this paradigm are studies that have yielded promising early data for targets such as BRAF and HER2 and microsatellite instability. These trends are expected to continue and the role of precision medicine deepens in the treatment of BTCs and these therapies are studies in relevant combinations, earlier dis­ease settings and as next generation therapies towards these targets are developed.
Biliary tract cancers (BTCs) are a heterogeneous group of malignancies arising from the epithelial cells of the distinct anatomical locations of the biliary tree (intrahepatic, perihi­lar, distal bile ducts or the gallbladder). BTCs are generally
A. Desai Department of Oncology, Mayo Clinic, Rochester, MN, USA
M. J. Borad ( Mayo Clinic Cancer Center, Phoenix, AZ, USA
Center for Individualized Medicine, Mayo Clinic, Rochester, MN, USA
Department of Molecular Medicine, Mayo Clinic, Rochester, MN, USA
Division of Hematology/Oncology, Mayo Clinic, Phoenix, AZ, USA e-mail: Borad.Mitesh@mayo.edu
*)
categorized into intrahepatic cholangiocarcinoma (ICCA), extrahepatic cholangiocarcinoma (ECCA), and gallbladder carcinoma (GBC). In 2019, in there was an estimated total of 54,390 new cases (liver cancer and BTC), with approxi­mately 35,740 deaths in the United States [1].
The denition of an ICCA is a cholangiocarcinoma (CCA) detected inside the hepatic parenchyma, whereas ECCA is a type of tumor located outside the liver paren­chyma. These tumors can arise in any portion of the extrahe­patic bile duct and can be additionally classied as hilar or distal CCA [2].
For localized disease, surgery remains the only curative option. Meanwhile, for advanced inoperable disease, chemo­therapy with gemcitabine and cisplatin has emerged as the standard of care [3]. In recent years, a growing number of genomic studies have begun to uncover the molecular under­pinnings of BTCs and suggest many potential treatments (Table 22.1). Targeted testing of advanced cholangiocarci­noma for decient mismatch repair (dMMR)/microsatellite instability (MSI) and for specic molecular alterations (FGFR, IDH and others), for which a targeted treatment might be available (Table22.2), is indicated for those who might be eligible for molecularly targeted therapy or immu­notherapy, preferably within the context of a clinical trial.
In the Molecular Screening for Cancer Treatment Optimization (MOSCATO)-01 trial, 43 of 1035 adults with advanced cancer had a biliary tract malignancy, 34 of whom successfully underwent high-throughput molecular screen­ing. Potentially actionable molecular aberrations were iden­tied in 23 patients (68 percent), 18 of whom received targeted treatment. Median progression-free survival was
5.2 months, and there were six objective responses (33 percent, one complete) [4]. This trial informed on the poten­tial impact of a molecularly targeted approach in patients with advanced biliary tract cancers. Thus, genomic studies of BTCs are ushering in a new era of precision therapy, already playing an emerging role in the treatment and prognostica­tion of BTCs.
© The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2022 M. Makuuchi et al. (eds.), The IASGO Textbook of Multi-Disciplinary Management of Hepato-Pancreato-Biliary Diseases,
https://doi.org/10.1007/978-981-19-0063-1_22
185
186
Table 22.1 Therapeutic targets and approach to molecular proling in biliary tract cancers
Molecular target Frequency Targeted agents Molecular test FGFR pathway ~10–20% of intrahepatic
IDH1 ~15% of intrahepatic
BRAF ~5% of intrahepatic
MSI-high or MMR deciency or high TMB ERRB2 (HER2) ~15–20% gallbladder cancer and
NTRK Rare Entrectinib [31],
Table 22.2 Clinical studies for molecularly targeted therapies in cholangiocarcinoma
Drug
FGFR2 fusions or gene rearrangements
Erdanitib [9] Phase 1 (n=11) ORR: 27%
Ingratinib [8, 10] Phase 2- cohort 1
Pemigatinib [11] Phase 2 (n=146) ORR: 35.5% (26.5%–45.5%) mPFS: 6.9months
IDH1 mutations
Ivosedinib [16] Phase 3 (n=187) mPFS: 2.7months vs. 1.4months; HR:
BRAF V600E mutations
Dabrafenib/Trametinib
[18]
MSI or dMMR/TMB
Pembrolizumab [20] Phase 2 (n=41) irORR: 40% mPFS, mOS: NR Pembrolizumab [23] Phase 2 (n=105) ORR: 29% 3-yr PFS: 32%
ERRB2 (HER2) mutations
Neratinib [30] Phase 2 (n=9) PR: 2/9 patients (22.2%)
ORR overall response rate, irORR immune related ORR, DoR duration of response, mPFS median progression free survival, mOS median overall survival, NR not reached
cholangiocarcinoma
cholangiocarcinoma
cholangiocarcinoma
~2% of biliary tract cancers Pembrolizumab [34] PCR, immunohistochemistry, or tumor next generation
extrahepatic cholangiocarcinoma cases
Type of trial (n=sample size) Primary endpoints (95% CI) Secondary endpoints (95% CI)
(n=108)
Phase 2 (n=43) ORR: 51% (36%–67%) mPFS: 9months
Erdatinib [9] Ingratinib [10] Pemigatinib [11] Futibatinib [13] Ivosedinib [16] Tumor next-generation DNA sequencing or targeted
Dabrafenib plus Trametinib [18], Vemurafenib [33]
Trastuzumab/Pertuzumab Multiple testing modalities available including
Larotrectinib [32]
ORR: 23.1% (15.6%–32.2%); DoR:
5.0months (0.9–19.1)
0.37 (0.25–0.54)
Tumor next generation DNA sequencing including FGFR2 intronic region, targeted RNAseq, or FISH testing for FGFR2 translocation
sequencing for hotspot mutations in coding region of IDH1 Tumor next-generation DNA sequencing or targeted sequencing for hotspot mutations in coding region of BRAF
DNA sequencing
immunohistochemistry and FISH for expression and amplication, tumor next generation DNA sequencing for mutations Tumor next-generation DNA sequencing including NTRK intronic region or targeted RNAseq, or FISH testing for NTRK translocation
mPFS: 7.3months mOS: 12.2months
OS: 21.1months
mOS: 10.3months (vs. 7.5months), HR: 0.79; (95% CI, 0.56–1.12)
mOS: 14months
A. Desai and M. J. Borad
The NCI-MATCH trial data conrmed the richness of molecular targets in cases of cholangiocarcinoma including: IDH1 mutations (17%), CDKN2A mutations (10%), BRAF mutations (7%), ERBB2 alterations (6%), NRAS mutations (6%), IDH2 mutations (5%), and FGFR2 alterations (3%). Intrahepatic cholangiocarcinoma had an assignment rate of
29.1% to 12 different NCI-MATCH subprotocols [5].
The genes most frequently associated with genomic alter­ations are TP53, KRAS, ARID1A, SMAD4, CCND1, MET, MDM2, CDKN2A, and CDKN2B, and the most common actionable gene targets are FGFR2 fusions, IDH1 mutations, and ERBB2 (HER-2) and MET amplications; actionable targets are commonly observed in ICCA (Fig.22.1) [6].
In this chapter, we discuss evidence for the management of CCA and molecular insights of personalized approaches, including broblast growth factor receptor (FGFR) inhibi­tors, checkpoint inhibitors, and other targets.

22.1 FGFR Alterations

About 13–17% of ICCAs harbor genomic alterations in the FGFR2 gene, with most being fusions, which predict tumor sensitivity to anti-FGFR2 tyrosine kinase inhibitors [7]. Translocations that relieve the FGFR2 gene of its upstream transcriptional regulation result in constitutively active
22 Molecularly Targeted Therapy inCholangiocarcinoma
187
Bile acids
STAT3
PO
4
STAT3
PO
4
STAT3
Transcripts: PD-L1, PD-L2, SOC53. MCL-1, BCL-XL
FDJ amplicon = PD-L1/L2 &JAK2
11q amplicon–
FGF19
JAK
ruxolitinib
FXR agonists, obeticholic acid
FXR. MCL-1
BCL-XL
afatinib, neratinib, varilitinib
EGFR
ERRFI1
vemurafenib, dabrafenib, etc.
cobimetinib, trametinib, etfc.
BBET protiens: SWI/SNF(e.g. ARID2). TGFβ. related (e.g. SMAD4D)
H3B-6527, INCB062079 BLU-554
ErbB3/4
FGF 19
FGFR4
PO
4
ERK
BMS-986158, CPI-0610, MK-8628
PO
4
ERK: e.g. MYC
RNA Pol 2 transcripts: MYC over-expression­amplification, indirectly MYC-targets (e.g. PD-L1)
trastuzumab, lapatinib, pertuzumab
HER2
RAS/RAS
MEK AKT
ERK
tazemetostat
EZH2, SMARCA/B
Histone methylation
DNA methylation
BGJ398, derazantinib, INCB054828
FGFR2 fusions
Jumonji­Dormain HDMs
BKM120.
taselisib
MK2206
IDH1
2-HG
TET
PI3KRAF/RAF
mTOR
ivosiedenib
DNZ HMAs: azacitidine, decitabine, guadecitabine, zebularine, etc.
ASG-22CE
Nection -4
α-KG
pembrclizumab, nivolumab
atezolizumab
palbocidib, ribicidib, abemecidib
PD-L1
Mitochondrion
onasidenib
CDKN2A/B CCNE1 amplification, RB1
α-KG
PD-1
MHC-peptide
Necantigens
MCL-1
BCL-XL
T Cell
TCR
olaparib, niraparib, rucaparib
BRCA∆ & ARID1A
Cell surface
Nucleus
MMR∆ε
Fig. 22.1 Emerging role of precision medicine in biliary tract cancers.
Yellow boxes highlight US FDA-approved drugs and drugs undergoing clinical investigation as reviewed, with arrows indicating pathway/tar­get activation and blocked lines indicating pathway/target inhibition. BTC targets/pathways discussed are shown in color-coded boxes
growth factor pathway signaling, promoting cell prolifera­tion, angiogenesis, and metastasis. Patients with FGFR aber­rations may have superior overall survival (OS) with FGFR-targeted therapy as compared to standard non targeted regimens [8]. Multiple inhibitors of FGFR isoforms 1–3 have shown activity in advanced cholangiocarcinoma har­boring FGFR2 translocations, including several ATP­competitive, reversible inhibitors (erdatinib, ingratinib, pemigatinib, and derazantinib) as well as a non-ATP com­petitive, covalent inhibitor, futibatinib.
Erdatinib was studied in a phase I trial including 187 patients with advanced solid tumors for which standard anti­neoplastic therapy was no longer effective. All patients with urothelial carcinoma and cholangiocarcinoma who responded to erdatinib carried FGFR mutations or fusions. Median duration of response (DoR) was 5.6months for urothelial
according to subcellular localization, blue = cell surface, orange = cyt­solic, red = mitochondrial, and green = nuclear. “Upwards arrow” denotes over-expression, “Delta” denotes copy number aberrations and/ or point mutation, a lighting bolt symbol denotes a synthetic lethal interaction between drug(s) and target(s) listed
carcinoma and 11.4months for cholangiocarcinoma, clearly demonstrating response in cholangiocarcinoma patients [9].
BJG 398 (ingratinib), an ATP-competitive FGFR1–3­selective oral tyrosine kinase inhibitor has showed good response in the second line setting for patients resistant to frontline gemcitabine-based therapies. This was based on the an open-label, phase 2 trial enrolled 140 patients with unre­sectable locally advanced or metastatic cholangiocarcinoma who had either progressed on or were intolerant to gemcitabine- based chemotherapy. For eligibility, all partici­pants had to have either FGFR gene fusions or rearrange­ments. Patients were grouped into three different cohorts: patients with FGFR2 gene fusions or rearrangements com­prised cohort 1 (n= 120), those with FGFR1 and FGFR3 gene fusions or rearrangements and/or FGFR mutations comprised cohort 2 (n= 20), and those with FGFR2 gene
188
A. Desai and M. J. Borad
fusions who had progressed after previous treatment with a selective FGFR inhibitor beyond ingratinib were included in cohort 3 (n=20). Patients received ingratinib 125mg orally for 21days of each 28-daycycle until unacceptable toxicity or disease progression.
Among 61 patients (n=48 FGFR2 fusions, n=8 FGFR2 mutations, n = 3 FGFR2 amplications) with >1 type of FGFR2 aberration detected in three patients the ORR, all partial responses (PRs), was 15%, with 75% of patients experiencing some disease control and a median progression­free survival (PFS) of 5.8months. Four patients who carried FGFR3 amplications did not respond. Dose modications were required for many patients, although AEs were mostly reversible. The most common adverse events (AE) were hyperphosphatemia (72%), with 25% of patients experienc­ing grade 3 or 4 hyperphosphatemia [10].
The updated results of the largest cohort of FGFR2 gene fusions or rearrangements (cohort 1) were reported recently with median follow up of 10.6 months (range 1.1–
55.9months). Centrally reviewed ORR was 23.1% (95% CI
15.6–32.2) with a median DoR of 5.0months (range 0.9–
19.1months). Among responders, 8 (32.0%) patients had a DoR of 6 months. Median PFS was 7.3months (95% CI
5.6–7.6 months). Most common adverse events (AEs, any grade) were hyperphosphatemia (76.9%), eye disorders (67.6%, excluding central serous retinopathy/retinal pigment epithelium detachment [CSR/RPED]), stomatitis (54.6%), and fatigue (39.8%).
Pemigatinib is a selective, potent, oral competitive inhibi­tor of FGFR1, FGFR2, and FGFR3, which was studied in the multicenter, open-label phase 2 broblast Growth factor receptor inhibitor in oncology and Hematology Trial (FIGHT-202) [11]. This trial evaluated the safety and anti­tumor activity of pemigatinib in previously treated patients with locally advanced or metastatic cholangiocarcinoma, with or without FGF/FGFR alterations. 38 (35.5% [95% CI
26.5–45.4]) patients with FGFR2 fusions or rearrangements achieved an ORR.Overall, hyperphosphatemia was the most common all-grade adverse event irrespective of cause (88 [60%] of 146 patients). Overall, 71 (49%) patients died dur­ing the study, most frequently because of disease progression (61 [42%]); no deaths were deemed to be treatment related.
Lastly, activation of FGFR2 kinase domain point muta­tions occurs as a mechanism of resistance to ATP-competitive FGFR inhibition; these mutations can be polyclonal and het­erogeneous [12]. Futibatinib (non-ATP-competitive) shows inhibitory activity against most secondary acquired resis­tance mutations, suggesting a role in FGFR2-translocated cholangiocarcinoma after progression on ATP-competitive FGFR inhibitors [13], although it is not active against the V565F gatekeeper mutation. Selective FGFR2 kinase inhibi­tors are in development with more potent FGFR2 inhibition and reduced off-target adverse events.

22.2 IDH Mutations

Gain-of-function mutations in the coding region of IDH1 are present in about 13% of cases of intrahepatic cholangiocarci­noma (almost never in extrahepatic cholangiocarcinoma) based upon a systematic review including 5393 cases of cholangiocarcinoma [14]. The mutant- IDH1 protein cata­lyzes production of an oncometabolite, D-2-hydroxyglutarate (2-HG), via NADPH-dependent reduction. Accumulation of 2-HG impairs cellular differentiation through effects on chromatin structure and DNA methylation, leading to tumorigenesis.
Ivosidenib is a rst-in-class, oral, selective, and revers­ible mutant-IDH1 inhibitor. In a phase 1 basket study of IDH1- mutated solid tumors, 73 patients with advanced cholangiocarcinoma refractory to standard therapies received ivosidenib [15]. Although objective responses were uncommon (5%), the median progression-free survival (3.8months) and overall survival (13.8months) were longer than expected for standard chemotherapy in similar popula­tions. The subsequent phase 3 ivosidenib in IDH1-mutant, chemotherapy- refractory cholangiocarcinoma (ClarIDHy) trial enrolled 185 patients with advanced IDH1-mutant cholangiocarcinoma after 1–2 lines of previous, unsuccess­ful systemic therapy [16]. Patient were randomized 2:1 to ivosidenib versus placebo and allowance of crossover at progression for patients in the placebo group Ivosidenib improved progression- free survival (the primary endpoint): median 2.7months for ivosidenib versus 1.4months for pla­cebo (HR 0.37, 95% CI 0.25–0.54, p < 0.001), and 32% treated with ivosidenib were progression-free at six months (vs none in the placebo group). The updated OS results pre­sented at ASCO GI 2021 showed median OS was
10.3months in patients who received ivosidenib compared with 7.5months for those who received placebo (HR, 0.79; 95% CI, 0.56–1.12; 1-sided p=0.093). Overall, ivosidenib was well tolerated with low rates of grade 3 or higher adverse events and only 8.5% (vs. 6.6%) requiring discon­tinuation for toxicity attributed to ivosidenib. The most common grade 3 or higher TEAEs reported in the ivosidenib and placebo groups, respectively, were ascites (9.0% vs
6.8%, respectively), blood bilirubin increase (5.4% vs
1.7%), and anemia (7.2% vs 0%). Based on these results, a regulatory approval is anticipated for patients with advanced, IDH1-mutant cholangiocarcinoma after ineffective standard therapy.

22.3 BRAF Alterations

Activating serine/threonine-protein kinase B-raf kinase (BRAF) mutations at the V600E locus are well-known driv­ers in oncology and an established therapeutic target in