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Garrett R.H., Grisham C.M. - Biochemistry (1999)(2nd ed.)(en)

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20.16

The Glyoxylate Cycle of Plants and Bacteria 671

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

O

 

 

B + H

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

COO

E

 

O

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

E

 

B

 

 

 

 

 

 

 

HC

 

 

 

 

 

 

 

 

COO

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

HC

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Glyoxalate

 

 

 

 

 

 

 

 

OH

 

COO

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

H

 

O

 

 

 

 

 

 

 

 

 

 

O

 

 

 

 

 

 

 

 

HC

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

O

 

 

 

 

H2C

 

C

 

SCoA

 

 

 

 

 

 

 

 

 

H2C

 

C

 

 

SCoA

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Acetyl-CoA

 

 

 

 

 

 

 

 

 

 

 

 

 

H2C

 

 

C

 

SCoA

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

CoASH

 

 

 

 

 

 

H2O

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

FIGURE 20.30

The malate synthase reaction.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

OH

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

COO

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

HC

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

H2C

 

COO

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Malate

because oxaloacetate cannot be transported out of the mitochondria. Aspartate formed in this way then moves from the mitochondria back to the glyoxysomes, where a reverse transamination with -ketoglutarate forms oxaloacetate, completing the shuttle. Finally, to balance the transaminations, glutamate shuttles from glyoxysomes to mitochondria.

Glyoxysome

Mitochondrion

Free fatty

acids

 

Aspartate

α -Keto-

α -Keto- Aspartate

 

 

glutarate

glutarate

Acetyl-CoA Oxaloacetate Glutamate

Glutamate Oxaloacetate

 

Citrate

 

Malate

 

 

 

 

Isocitrate

 

Cytosol

 

 

Fumarate

 

 

 

Acetyl-

Glyoxylate

Succinate

Succinate

CoA

 

 

 

Malate

FIGURE 20.31 Glyoxysomes lack three of the enzymes needed to run the glyoxylate cycle. Succinate dehydrogenase, fumarase, and malate dehydrogenase are all “borrowed” from the mitochondria in a shuttle in which succinate and glutamate are passed to the mitochondria, and -ketoglutarate and aspartate are passed to the glyoxysome.

Malate Oxaloacetate

Phosphoenolpyruvate

Carbohydrate

672 Chapter 20 The Tricarboxylic Acid Cycle

PROBLEMS

1.Describe the labeling pattern that would result from the introduction into the TCA cycle of glutamate labeled at C with 14C.

2.Describe the effect on the TCA cycle of (a) increasing the concentration of NAD , (b) reducing the concentration of ATP, and

(c) increasing the concentration of isocitrate.

3.The serine residue of isocitrate dehydrogenase that is phosphorylated by protein kinase lies within the active site of the enzyme. This situation contrasts with most other examples of covalent modification by protein phosphorylation, where the phosphorylation occurs at a site remote from the active site. What direct effect do you think such active-site phosphorylation might have on the catalytic activity of isocitrate dehydrogenase? (See Barford, D., 1991. Molecular mechanisms for the control of enzymic activity by protein phosphorylation. Biochimica et Biophysica Acta 1133:55–62.)

4.The first step of the -ketoglutarate dehydrogenase reaction involves decarboxylation of the substrate and leaves a covalent TPP intermediate. Write a reasonable mechanism for this reaction.

5.In a tissue where the TCA cycle has been inhibited by fluoroacetate, what difference in the concentration of each TCA cycle metabolite would you expect, compared with a normal, uninhibited tissue?

6.On the basis of the description in Chapter 18 of the physical

FURTHER READING

Akiyama, S. K., and Hammes, G. G., 1980. Elementary steps in the reaction mechanism of the pyruvate dehydrogenase multienzyme complex from Escherichia coli: Kinetics of acetylation and deacetylation. Biochemistry 19:4208–4213.

Akiyama, S. K., and Hammes, G. G., 1981. Elementary steps in the reaction mechanism of the pyruvate dehydrogenase multienzyme complex from Escherichia coli: Kinetics of flavin reduction. Biochemistry 20:1491–1497.

Atkinson, D. E., 1977. Cellular Energy Metabolism and Its Regulation. New York: Academic Press.

Bodner, G. M., 1986. The tricarboxylic acid (TCA), citric acid or Krebs cycle. Journal of Chemical Education 63:673–677.

Frey, P. A., 1982. Mechanism of coupled electron and group transfer in

Escherichia coli pyruvate dehydrogenase. Annals of the New York Academy of Sciences 378:250–264.

Gibble, G.W., 1973. Fluoroacetate toxicity. Journal of Chemical Education 50:460–462.

Hansford, R. G., 1980. Control of mitochondrial substrate oxidation. In Current Topics in Bioenergetics, vol. 10, pp. 217–278. New York: Academic Press.

Hawkins, R. A., and Mans, A. M., 1983. Intermediary metabolism of carbohydrates and other fuels. In Handbook of Neurochemistry, 2nd ed., Lajtha, A., ed., pp. 259–294. New York: Plenum Press.

Kelly, R. M., and Adams, M. W., 1994. Metabolism in hyperthermophilic microorganisms. Antonie van Leeuwenhoek 66:247–270.

Krebs, H. A., 1970. The history of the tricarboxylic acid cycle. Perspectives in Biology and Medicine 14:154–170.

properties of FAD and FADH2, suggest a method for the measurement of the enzyme activity of succinate dehydrogenase.

7.Starting with citrate, isocitrate, -ketoglutarate, and succinate, state which of the individual carbons of the molecule undergo oxidation in the next step of the TCA cycle. Which molecules undergo a net oxidation?

8.In addition to fluoroacetate, consider whether other analogs of TCA cycle metabolites or intermediates might be introduced to inhibit other, specific reactions of the cycle. Explain your reasoning.

9.Based on the action of thiamine pyrophosphate in catalysis of the pyruvate dehydrogenase reaction, suggest a suitable chemical mechanism for the pyruvate decarboxylase reaction in yeast:

pyruvate 88n acetaldehyde CO2

10. Aconitase catalyzes the citric acid cycle reaction:

citrate

34

isocitrate

 

The standard free energy change, G° , for this reaction is6.7 kJ/mol. However, the observed free energy change ( G) for this reaction in pig heart mitochondria is 0.8 kJ/mol. What is the ratio of [isocitrate]/[citrate] in these mitochondria? If [isocitrate] 0.03 mM, what is [citrate]?

Krebs, H. A., 1981. Reminiscences and Reflections. Oxford, England: Oxford University Press.

Lowenstein, J. M., 1967. The tricarboxylic acid cycle. In Metabolic Pathways, 3rd ed., Greenberg, D., ed,. vol. 1, pp. 146–270. New York: Academic Press.

Lowenstein, J. M., ed., 1969. Citric Acid Cycle: Control and Compartmentation.

New York: Marcel Dekker.

Maden, B. E., 1995. No soup for starters? Autotrophy and the origins of metabolism. Trends in Biochemical Sciences 20:337–341.

Newsholme, E. A., and Leech, A. R., 1983. Biochemistry for the Medical Sciences. New York: John Wiley & Sons.

Srere, P. A., 1975. The enzymology of the formation and breakdown of citrate. Advances in Enzymology 43:57–101.

Srere, P. A., 1987. Complexes of sequential metabolic enzymes. Annual Review of Biochemistry 56:89–124.

Walsh, C., 1979. Enzymatic Reaction Mechanisms. San Francisco: W. H.

Freeman.

Wiegand, G., and Remington, S. J., 1986. Citrate synthase: Structure, control and mechanism. Annual Review of Biophysics and Biophysical Chemistry

15:97–117.

Williamson, J. R., 1980. Mitochondrial metabolism and cell regulation. In

Mitochondria: Bioenergetics, Biogenesis and Membrane Structure, Packer, L., and Gomez-Puyou, A., eds. New York: Academic Press.

Chapter 21

Electron Transport and

Oxidative Phosphorylation

Wall Piece #IV (1985), a kinetic sculpture by George Rhoads. This complex mechanical art form can be viewed as a metaphor for the molecular apparatus underlying electron transport and ATP synthesis by oxidative phosphorylation. (1985 by George Rhoads)

Living cells save up metabolic energy predominantly in the form of fats and carbohydrates, and they “spend” this energy for biosynthesis, membrane transport, and movement. In both directions, energy is exchanged and transferred in the form of ATP. In Chapters 19 and 20 we saw that glycolysis and the TCA cycle convert some of the energy available from stored and dietary sugars directly to ATP. However, most of the metabolic energy that is obtainable from substrates entering glycolysis and the TCA cycle is funneled via oxidation– reduction reactions into NADH and reduced flavoproteins, the latter symbolized by [FADH2]. We now embark on the discovery of how cells convert the stored metabolic energy of NADH and [FADH2] into ATP.

Whereas ATP made in glycolysis and the TCA cycle is the result of sub- strate-level phosphorylation, NADH-dependent ATP synthesis is the result of oxidative phosphorylation. Electrons stored in the form of the reduced coenzymes, NADH or [FADH2], are passed through an elaborate and highly orga-

In all things of nature there is something of the marvelous.

ARISTOTLE (384–322 B.C.)

OUTLINE

 

21.1

Electron Transport and Oxidative

 

 

Phosphorylation Are Membrane-

 

 

Associated Processes

21.2

Reduction Potentials—An Accounting

 

 

Device for Free Energy Changes in

 

 

Redox Reactions

21.3

The Electron Transport Chain—An

 

 

Overview

21.4

Complex I: NADH–Coenzyme Q

 

 

Reductase

21.5

Complex II: Succinate–Coenzyme Q

 

 

Reductase

21.6

Complex III: Coenzyme Q–Cytochrom

cReductase

21.7Complex IV: Cytochrome c Oxidase

21.8The Thermodynamic View of

Chemiosmotic Coupling

21.9

ATP Synthase

21.10

Inhibitors of Oxidative Phosphorylatio

21.11

Uncouplers Disrupt the Coupling of

 

 

Electron Transport and ATP Synthase

21.12

ATP Exits the Mitochondria via an

 

 

ATP–ADP Translocase

21.13

What Is the P/O Ratio for Electron

 

 

Transport and Oxidative

 

 

Phosphorylation?

21.14

Shuttle Systems Feed the Electrons of

 

 

Cytosolic NADH into Electron

 

 

Transport

673

(a, B. King/BPS)

674 Chapter 21 Electron Transport and Oxidative Phosphorylation

Electron Transport and

Oxidative Phosphorylation

(a)

nized chain of proteins and coenzymes, the so-called electron transport chain, finally reaching O2 (molecular oxygen), the terminal electron acceptor. Each component of the chain can exist in (at least) two oxidation states, and each component is successively reduced and reoxidized as electrons move through the chain from NADH (or [FADH2]) to O2. In the course of electron transport, a proton gradient is established across the inner mitochondrial membrane. It is the energy of this proton gradient that drives ATP synthesis.

21.1 Electron Transport and Oxidative Phosphorylation

Are Membrane-Associated Processes

The processes of electron transport and oxidative phosphorylation are mem- brane-associated. Bacteria are the simplest life form, and bacterial cells typically consist of a single cellular compartment surrounded by a plasma membrane and a more rigid cell wall. In such a system, the conversion of energy from NADH and [FADH2] to the energy of ATP via electron transport and oxidative phosphorylation is carried out at (and across) the plasma membrane. In eukaryotic cells, electron transport and oxidative phosphorylation are localized in mitochondria, which are also the sites of TCA cycle activity and (as we shall see in Chapter 24) fatty acid oxidation. Mammalian cells contain from 800 to 2500 mitochondria; other types of cells may have as few as one or two or as many as half a million mitochondria. Human erythrocytes, whose purpose is simply to transport oxygen to tissues, contain no mitochondria at all. The typical mitochondrion is about 0.5 0.3 microns in diameter and from 0.5 micron to several microns long; its overall shape is sensitive to metabolic conditions in the cell.

Mitochondria are surrounded by a simple outer membrane and a more complex inner membrane (Figure 21.1). The space between the inner and outer membranes is referred to as the intermembrane space. Several enzymes that utilize ATP (such as creatine kinase and adenylate kinase) are found in the intermembrane space. The smooth outer membrane is about 30 to 40% lipid and 60 to 70% protein, and has a relatively high concentration of phosphatidylinositol. The outer membrane contains significant amounts of porin —a transmembrane protein, rich in -sheets, that forms large channels across the membrane, permitting free diffusion of molecules with molecular weights of about 10,000 or less. Apparently, the outer membrane functions mainly to

Outer membrane

Inner membrane

Intermembrane space

Matrix

Cristae

(b)

FIGURE 21.1 (a) An electron micrograph of a mitochondrion. (b) A drawing of a mitochondrion with components labelled.

FIGURE 21.2
Fe3+
Sample:
Fe3+/Fe2+

21.2 Reduction Potentials—An Accounting Device for Free Energy Changes in Redox Reactions

675

maintain the shape of the mitochondrion. The inner membrane is richly packed with proteins, which account for nearly 80% of its weight; thus, its density is higher than that of the outer membrane. The fatty acids of inner membrane lipids are highly unsaturated. Cardiolipin and diphosphatidylglycerol (Chapter 8) are abundant. The inner membrane lacks cholesterol and is quite impermeable to molecules and ions. Species that must cross the mitochondrial inner membrane—ions, substrates, fatty acids for oxidation, and so on— are carried by specific transport proteins in the membrane. Notably, the inner membrane is extensively folded (Figure 21.1). The folds, known as cristae, provide the inner membrane with a large surface area in a small volume. During periods of active respiration, the inner membrane appears to shrink significantly, leaving a comparatively large intermembrane space.

The Mitochondrial Matrix Contains the Enzymes of the TCA Cycle

The space inside the inner mitochondrial membrane is called the matrix, and it contains most of the enzymes of the TCA cycle and fatty acid oxidation. (An important exception, succinate dehydrogenase of the TCA cycle, is located in the inner membrane itself.) In addition, mitochondria contain circular DNA molecules, along with ribosomes and the enzymes required to synthesize proteins coded within the mitochondrial genome. Although some of the mitochondrial proteins are made this way, most are encoded by nuclear DNA and synthesized by cytosolic ribosomes.

21.2 Reduction Potentials—An Accounting Device for Free

Energy Changes in Redox Reactions

(a) Ethanol

 

acetaldehyde

 

 

 

–0.197v

Potentiometer

Electron Electron flow flow

Ethanol

2 H+

H2

acetaldehyde

 

 

Sample:

Reference

acetaldehyde/

H+ /1 atm H2

ethanol

 

 

(b) Fumarate

succinate

 

 

+0.031v

 

Electron Electron flow flow

On numerous occasions in earlier chapters, we have stressed that NADH and reduced flavoproteins ([FADH2]) are forms of metabolic energy. These reduced coenzymes have a strong tendency to be oxidized—that is, to transfer electrons to other species. The electron transport chain converts the energy of electron transfer into the energy of phosphoryl transfer stored in the phosphoric anhydride bonds of ATP. Just as the group transfer potential was used in Chapter 3 to quantitate the energy of phosphoryl transfer, the standard reduction potential, denoted by ° , quantitates the tendency of chemical species to be reduced or oxidized. The standard reduction potential describing electron transfer between two species,

Reduced donor

Oxidized acceptor

(21.1)

ne

 

Oxidized donor

Reduced acceptor

 

is related to the free energy change for the process by

 

G° n °

(21.2)

where n represents the number of electrons transferred; is Faraday’s constant, 96,485 J/V mol; and ° is the difference in reduction potentials between the donor and acceptor. This relationship is straightforward, but it depends on a standard of reference by which reduction potentials are defined.

Succinate

Fumarate

 

H2

2 H+

 

 

 

Sample:

 

Reference

fumarate/

H+ /1 atm H2

succinate

 

 

(c) Fe3+

Fe2+

+0.771v

 

 

 

 

Electron Electron flow flow

Fe2+

H2 2 H+

Reference

H+ /1 atm H2

Measurement of Standard Reduction Potentials

Standard reduction potentials are determined by measuring the voltages generated in reaction half-cells (Figure 21.2). A half-cell consists of a solution containing 1 M concentrations of both the oxidized and reduced forms of the substance whose reduction potential is being measured, and a simple electrode.

Experimental apparatus used to measure the standard reduction potential of the indicated redox couples: (a) the acetaldehyde/ethanol couple, (b) the fumarate/succinate couple, (c) the Fe3 /Fe2 couple.

676 Chapter 21 Electron Transport and Oxidative Phosphorylation

(Together, the oxidized and reduced forms of the substance are referred to as a redox couple.) Such a sample half-cell is connected to a reference half-cell and electrode via a conductive bridge (usually a salt-containing agar gel). A sensitive potentiometer (voltmeter) connects the two electrodes so that the electrical potential (voltage) between them can be measured. The reference half-cell normally contains 1 M H in equilibrium with H2 gas at a pressure of 1 atm. The H /H2 reference half-cell is arbitrarily assigned a standard reduction potential of 0.0 V. The standard reduction potentials of all other redox couples are defined relative to the H /H2 reference half-cell on the basis of the sign and magnitude of the voltage (electromotive force, emf) registered on the potentiometer (Figure 21.2).

If electron flow between the electrodes is toward the sample half-cell, reduction occurs spontaneously in the sample half-cell, and the reduction potential is said to be positive. If electron flow between the electrodes is away from the sample half-cell and toward the reference cell, the reduction potential is said to be negative because electron loss (oxidation) is occurring in the sample halfcell. Strictly speaking, the standard reduction potential, ° , is the electromotive force generated at 25°C and pH 7.0 by a sample half-cell (containing 1 M concentrations of the oxidized and reduced species) with respect to a reference half-cell. (Note that the reduction potential of the hydrogen half-cell is pH-dependent. The standard reduction potential, 0.0 V, assumes 1 M H . The hydrogen half-cell measured at pH 7.0 has an ° of 0.421 V.)

Several Examples

Figure 21.2a shows a sample/reference half-cell pair for measurement of the standard reduction potential of the acetaldehyde/ethanol couple. Because electrons flow toward the reference half-cell and away from the sample half-cell, the standard reduction potential is negative, specifically 0.197 V. In contrast, the fumarate/succinate couple and the Fe3 /Fe2 couple both cause electrons to flow from the reference half-cell to the sample half-cell; that is, reduction occurs spontaneously in each system, and the reduction potentials of both are thus positive. The standard reduction potential for the Fe3 /Fe2 half-cell is much larger than that for the fumarate/succinate half-cell, with values of0.771 V and 0.031 V, respectively. For each half-cell, a half-cell reaction describes the reaction taking place. For the fumarate/succinate half-cell coupled to a H H2 reference half-cell, the reaction occurring is indeed a reduction of fumarate.

Fumarate 2 H 2 e 88n succinate

0.031 V

(21.3)

Similarly, for the Fe3 /Fe2 half-cell,

 

 

°

 

 

 

 

 

Fe3 e 88n Fe2

 

0.771 V

(21.4)

 

°

 

 

 

However, the reaction occurring in the acetaldehyde/ethanol half-cell is the oxidation of ethanol:

Ethanol 88n acetaldehyde 2 H 2 e

0.197 V (21.5)

°

 

The Significance of °

Some typical half-cell reactions and their respective standard reduction potentials are listed in Table 21.1. Whenever reactions of this type are tabulated, they are uniformly written as reduction reactions, regardless of what occurs in the given half-cell. The sign of the standard reduction potential indicates which reaction really occurs when the given half-cell is combined with the reference hydrogen half-cell. Redox couples that have large positive reduction potentials

21.2 Reduction Potentials—An Accounting Device for Free Energy Changes in Redox Reactions

677

Table 21.1

Standard Reduction Potentials for Several

Biological Reduction Half-Reactions

Reduction Half-Reaction (V)

1 O2 2 H 2 e 88n H2O

0.816

2

 

Fe3 e 88n Fe2

0.771

Photosystem P700

0.430

NO3 2 H 2 e 88n NO2 H2O

0.421

Cytochrome f (Fe3 ) e 88n cytochrome f (Fe2 )

0.365

Cytochrome a3(Fe3 ) e 88n cytochrome a3(Fe2 )

0.350

Cytochrome a(Fe3 ) e 88n cytochrome a(Fe2 )

0.290

Rieske Fe-S(Fe3 ) e 88n Rieske Fe-S(Fe2 )

0.280

Cytochrome c (Fe3 ) e 88n cytochrome c (Fe2 )

0.254

Cytochrome c1(Fe3 ) e 88n cytochrome c1(Fe2 )

0.220

UQH H e 88n UQH2 (UQ coenzyme Q)

0.190

UQ 2 H 2 e 88n UQH2

0.060

Cytochrome b H(Fe3 ) e 88n cytochrome b H(Fe2 )

0.050

Fumarate 2 H 2 e 88n succinate

0.031

UQ H e 88n UQH

0.030

Cytochrome b 5(Fe3 ) e 88n cytochrome b 5 (Fe2 )

0.020

[FAD] 2 H 2 e 88n [FADH2]

0.003–0.091*

Cytochrome b L(Fe3 ) e 88n cytochrome b L(Fe2 )

0.100

Oxaloacetate 2 H 2 e 88n malate

0.166

Pyruvate 2 H 2 e 88n lactate

0.185

Acetaldehyde 2 H 2 e 88n ethanol

0.197

FMN 2 H 2 e 88n FMNH2

0.219

FAD 2 H 2 e 88n FADH2

0.219

Glutathione (oxidized) 2 H 2 e 88n 2 glutathione (reduced)

0.230

Lipoic acid 2 H 2 e 88n dihydrolipoic acid

0.290

1,3-Bisphosphoglycerate 2 H 2 e 88n

 

glyceraldehyde-3-phosphate Pi

0.290

NAD 2 H 2 e 88n NADH H

0.320

NADP 2 H 2 e 88n NADPH H

0.320

Lipoyl dehydrogenase [FAD] 2 H 2 e 88n

 

lipoyl dehydrogenase [FADH2]

0.340

-Ketoglutarate CO2 2 H 2 e 88n isocitrate

0.380

2 H 2 e 88n H2

0.421

Ferredoxin (spinach) (Fe3 ) e 88n ferredoxin (spinach) (Fe2 )

0.430

Succinate CO2 2 H 2 e 88n -ketoglutarate H2O

0.670

*Typical values for reduction of bound FAD in flavoproteins such as succinate dehydrogenase (see Bonomi, F., Pagani, S., Cerletti, P., and Giori, C., 1983. European Journal of Biochemistry 134:439–445).

have a strong tendency to accept electrons, and the oxidized form of such a couple (O2, for example) is a strong oxidizing agent. Redox couples with large negative reduction potentials have a strong tendency to undergo oxidation (that is, donate electrons), and the reduced form of such a couple (NADPH, for example) is a strong reducing agent.

678 Chapter 21 Electron Transport and Oxidative Phosphorylation

Coupled Redox Reactions

The half-reactions and reduction potentials in Table 21.1 can be used to analyze energy changes in redox reactions. The oxidation of NADH to NAD can be coupled with the reduction of -ketoglutarate to isocitrate:

NAD isocitrate 88n NADH H -ketoglutarate CO2 (21.6)

This is the isocitrate dehydrogenase reaction of the TCA cycle. Writing the two half-cell reactions, we have

NAD 2 H 2 e 88n NADH H

0.32 V

(21.7)

°

-Ketoglutarate CO2 2 H 2 e 88n isocitrate

0.38 V

(21.8)

°

 

In a spontaneous reaction, electrons are donated by (flow away from) the half–reaction with the more negative reduction potential and are accepted by (flow toward) the half–reaction with the more positive reduction potential. Thus, in the present case, isocitrate donates electrons and NAD accepts elec-

trons. The convention defines ° as

 

 

(acceptor) (donor)

(21.9)

°

°

°

 

In the present case, isocitrate is the donor and NAD the acceptor, so we write

° 0.32 V ( 0.38 V) 0.06 V

(21.10)

From Equation 21.2, we can now calculate G° as

 

G ° (2)(96.485 kJ V mol)(0.06 V)

(21.11)

G ° 11.58 kJ mol

 

Note that a reaction with a net positive ° yields a negative G° , indicating a spontaneous reaction.

The Dependence of the Reduction Potential on Concentration

We have already noted that the standard free energy change for a reaction,G° , does not reflect the actual conditions in a cell, where reactants and products are not at standard-state concentrations (1 M). Equation 3.12 was introduced to permit calculations of actual free energy changes under non– standard-state conditions. Similarly, standard reduction potentials for redox couples must be modified to account for the actual concentrations of the oxidized and reduced species. For any redox couple,

ox ne 34 red

(21.12)

the actual reduction potential is given by

 

 

(RT n ) ln

[ox]

 

(21.13)

 

°

[red]

Reduction potentials can also be quite sensitive to molecular environment. The influence of environment is especially important for flavins, such as FAD/FADH2 and FMN/FMNH2. These species are normally bound to their respective flavoproteins; the reduction potential of bound FAD, for example, can be very different from the value shown in Table 21.1 for the free FAD– FADH2 couple of 0.219 V. A problem at the end of the chapter addresses this case.

FIGURE 21.3

21.3 The Electron Transport Chain—An Overview

679

21.3 The Electron Transport Chain—An Overview

As we have seen, the metabolic energy from oxidation of food materials—sug- ars, fats, and amino acids—is funneled into formation of reduced coenzymes (NADH) and reduced flavoproteins ([FADH2]). The electron transport chain reoxidizes the coenzymes, and channels the free energy obtained from these reactions into the synthesis of ATP. This reoxidation process involves the removal of both protons and electrons from the coenzymes. Electrons move from NADH and [FADH2] to molecular oxygen, O2, which is the terminal acceptor of electrons in the chain. The reoxidation of NADH,

NADH(reductant) H

1

O2(oxidant) 88n NAD H2O

(21.14)

 

2

 

 

 

involves the following half-reactions:

 

 

 

NAD 2 H 2 e 88n

 

NADH H

0.32 V

(21.15)

1 O2 2 H 2 e 88n

 

H2O

°

 

 

0.816 V (21.16)

2

 

 

°

 

Here, half-reaction (21.16) is the electron acceptor and half-reaction (21.15) is the electron donor. Then

° 0.816 ( 0.32) 1.136 V

and, according to Equation (21.2), the standard-state free energy change, G° , is 219 kJ/mol. Molecules along the electron transport chain have reduction potentials between the values for the NAD NADH couple and the oxygen/ H2O couple, so that electrons move down the energy scale toward progressively more positive reduction potentials (Figure 21.3).

 

 

 

 

 

Complex I

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

-400

 

 

/NADH

 

 

FMN (Fe/S)N1 (Fe/S)N4

(Fe/S)N3

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

NAD

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

+

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

-200

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

(mV)

 

 

 

 

 

 

 

 

 

 

 

FAD

 

(Fe/S)N2

 

 

 

 

 

 

Complex III

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

b b

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Complex II

 

 

 

 

 

 

 

 

 

 

L

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

0

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

H

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Fum/Succ

 

 

 

 

 

 

 

 

 

 

 

 

(Fe/S)S3

 

(Fe/S)S1

 

 

 

UQ

 

 

 

 

 

 

Fe/SRieske

c

 

 

c

 

 

a

 

 

Cu

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

10

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

+200

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

1

 

 

 

 

 

Complex IV

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

A

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

3

 

 

+400

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

a

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

° and values for the components of the mitochondrial electron transport chain. Values indicated are consensus values for animal mitochondria. Black bars represent ° ; red bars, .

+600

(Adapted from Nicholls, D. G., and
FIGURE 21.4

680 Chapter 21 Electron Transport and Oxidative Phosphorylation

Complex I

Flavoprotein 1

NADH dehydrogenase, FMN,

Fe-S centers

NADH coenzyme Q oxidoreductase

Complex II

Flavoprotein 2

Succinate dehydrogenase, FAD (covalent),

Fe-S centers, b-type heme

Succinate-coenzyme Q

oxidoreductase

Although electrons move from more negative to more positive reduction potentials in the electron transport chain, it should be emphasized that the electron carriers do not operate in a simple linear sequence. This will become evident when the individual components of the electron transport chain are discussed in the following paragraphs.

The Electron Transport Chain Can Be Isolated in Four Complexes

The electron transport chain involves several different molecular species, including:

(a)Flavoproteins, which contain tightly bound FMN or FAD as prosthetic groups, and which (as noted in Chapter 20) may participate in oneor twoelectron transfer events.

(b)Coenzyme Q, also called ubiquinone (and abbreviated CoQ or UQ) (Figure 8.18), which can function in either oneor two-electron transfer reactions.

(c)Several cytochromes (proteins containing heme prosthetic groups [see Chapter 5], which function by carrying or transferring electrons), includ-

ing cytochromes b, c, c1, a, and a3. Cytochromes are one-electron transfer agents, in which the heme iron is converted from Fe2 to Fe3 and back.

(d)A number of iron–sulfur proteins, which participate in one-electron transfers involving the Fe2 and Fe3 states.

(e)Protein-bound copper, a one-electron transfer site, which converts between Cu and Cu2 .

All these intermediates except for cytochrome c are membrane-associated (either in the mitochondrial inner membrane of eukaryotes or in the plasma membrane of prokaryotes). All three types of proteins involved in this chain— flavoproteins, cytochromes, and iron–sulfur proteins—possess electron-trans- ferring prosthetic groups.

Fatty acyl-CoA dehydrogenase

 

 

Flavoprotein 3

 

 

Electron-transferring

 

 

flavoprotein, FAD,

 

H2O

Fe-S centers

1

O2

 

 

2

 

Complex III

Complex IV

 

UQ/ UQH2 pool

Flavoprotein 4

Sn-glycerophosphate dehydrogenase FAD,

Fe-S centers

Cytochrome bc1 complex,

 

 

 

 

Cytochrome aa3 complex,

2 b-type hemes,

 

 

 

 

Rieske Fe-S center,

 

Cytochrome c

 

 

2 a-type hemes,

 

 

 

 

 

 

Cu ions

C-type heme (cyt c1)

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Coenzyme Q-cytochrome c

 

 

 

 

Cytochrome c oxidase

oxidoreductase

 

 

 

 

 

An overview of the complexes and pathways in the mitochondrial electron transport chain.

Ferguson, S. J., 1992. Bioenergetics 2. London: Academic Press.)

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