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Y. H. Pita-Juarez et al.
downstream analysis. Hence, for all assays, cells (or spots in the case of Visium and areas of interest, in the case of GeoMx DSP) are ltered out if they contain a low number of genes, or a very low number of expressed transcripts. For many single-cell spatial transcriptomics methods based on imag­ing, morphology can also be utilized to keep or discard areas, such as the shape of the cells and the probability of incorrect cell segmentation, as well as specic surface markers, such as Pan-cytokeratin, DAPI delineating nuclei, and CD45. To ensure that no erroneous data is included for downstream analyses, spots/areas/cells with many negative probes in the case of imaging single-cell spatial transcriptomics and spots exhibiting high contamination, assessed with tools like SpotClean, for spot-level spatial transcriptomics can also be excluded from downstream analysis [87]. Finally, similarly to scRNA-seq, cells/spots with high numbers of transcripts that are known to indicate low quality data, such as high mitochondrial reads are usually discarded from the analysis.
Technical differences between samples owed to process­ing batches or technology differences can also be a major issue in spatial transcriptomics and extra care should be taken during integrating different samples, especially across modalities. Normalization accounts for differences in sequencing and capture depth between cells (spots or areas of interest, depending on the experiment) and is further com­plicated by variations in cellular density across the tissue. Several methods for normalization and sample integration that are available for single-cell RNA-seq have been adapted to spatial transcriptomics with remarkable success [88]. The selection of a dimensionality reduction method depends on the main goals: summarization (e.g., PCA) or visualization (e.g., UMAP) [89].
Downstream Analysis
The goal of downstream analysis after preprocessing is to identify spatial domains with coherent gene expression pro­les, such as tissue niches and cell–cell interactions (CCIs) within, or pathogenic domains in diseased tissues where aberrant interactions may occur. Methods such as clustering as well as integration with scRNA-seq data, such mapping, deconvolution, and ligand-receptor studies [90], can be used to achieve this goal (Fig.11.4b–d). However, in contrast to single-cell RNA-seq, there are many different methods that infer spatially aware embeddings [91] or clustering [92, 93] and can integrate features from histology. This paradigm is carried on to downstream analysis, such as cell-cell commu­nication, which can also be performed in a spatially-aware manner [94, 95], where interactions between faraway cells/ spots have less weight than between adjacent ones. Trajectory analysis can also be done in a spatially aware manner [96,
97] and an analysis specic to spatial transcriptomics is
neighborhood [98, 99] and spatially variable gene identica­tion [100], to identify higher-level features that might differ in their spatial localization, either between conditions of interest or treatments.
Finally, the integration of single cell with spatial tran­scriptomics data has been repeatedly shown to be able to enhance the insight generated from each modality alone. For spot-level spatial transcriptomics, this is often done through cell type deconvolution, where given a single-cell reference, each spot is broken down into the cell types it contains [101]. Many tools then offer the ability to perform downstream analysis taking into account that information, such as cell­type specic differential expression using distances [102,
103], identication of spatial domains with similar cell type
compositions [104], imputation of unseen gene expression, based on single-cell RNA-seq [105], and inference of cell­cell communication between cell types in each spot [106]. Even when lacking an appropriate reference for cell type deconvolution, methods exist that allow for reference-free cell type deconvolution into cell types which can then be annotated using expression [107, 108]. For single-cell spatial transcriptomics, the different feature space between single­cell RNA-sequencing and spatial transcriptomics can pose issues during integration, which can be solved through spe­cialized pipelines [109, 110].
Conclusion andFuture Directions
RNA transcriptomics at bulk, single cell, and spatial level have been proven invaluable assets for studying the gene expression patterns involved in wound healing. By analyzing the transcriptomes of different cell types in wounded tissue, researchers identify the genes and signaling pathways that are activated or suppressed during the healing process. This information has already provided insights into the cellular and molecular mechanisms underlying tissue repair, as well as potential therapeutic targets for promoting or accelerating healing [1].
The eld of single-cell multi-omics has been expanding rapidly, and spatial tools are following closely behind as the newest and most comprehensive modality. Single-cell RNA transcriptomic studies have revealed the heterogeneous skin cell types involved in the wound healing, identied novel gene expression patterns, such as the upregulation of extra­cellular matrix (ECM) proteins, growth factors, and cyto­kines, as well as the activation of inammatory and angiogenic pathways [18]. On the other end, spatial tran­scriptomics has emerged as a groundbreaking tool for study­ing the spatial organization of gene expression patterns in wounded tissue.
Combining scRNA-seq with ST can be a powerful tech­nique, allowing researchers to map the transcriptomes of
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individual cells in their native spatial context, providing a more comprehensive understanding of the cellular interac­tions and signaling pathways involved in tissue repair [111]. Recent publications have described spatial versions of high­throughput single-cell assays such as single-cell assays of transposase-accessible chromatin with sequencing (ATAC­seq) [112], chromatin landscapes in single cells (CUT&Tag) [113], and whole-genome sequencing [114], along with imaging techniques for epigenomic elements. Spatial biol­ogy now includes proteomics and functional CRISPR-based perturbations to study the spatial effects of gene knockouts [115]. Joint proling of multiple measurements from the same single cell, such as joint scRNA-seq and ATAC-seq, is expected to be included in spatial tools soon. To keep pace with these rapid technological advances, innovations such as sample barcoding and targeted sequencing methods have been widely adopted in scRNA-seq workows to increase throughput and efciency, reduce sequencing depth require­ments, and decrease costs [116].
While many of these discoveries are still in the research phase, their implications for therapy can be signicant [117
122]. The development of computational algorithms to inte-
grate these techniques with clinical data has the potential to accelerate the translation of knowledge into clinical care. Further improvements in standardization and accessibility have already led to the integration of these complex assays into clinical trials, fostering the development of personalized medicine approaches for optimized treatments in wound healing. Ultimately, the continued advancements in these techniques have the potential to signicantly enhance our understanding of wound healing mechanisms and lead to more effective treatments.
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Structural andFunctional Changes
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inSkin oftheDiabetic Foot
PaschalisChatzipantelis, EleftheriaAngelikiValsami, AntoniosKafanas, andAristidisVeves
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Abstract
Dermatologic conditions which are related to diabetes include acanthosis nigricans, characterized by a hyper­pigmented, velvety, cutaneous thickening that appears predominantly in the neck, axilla, and groin areas; necro­biosis lipoidica (NL), a chronic, necrotizing, granuloma­tous skin disease; granuloma annulare; diabetic bullae and diabetic dermopathy; and infections. As these condi­tions can be present in the lower extremity, they should be sought and easily recognized by the health care providers who manage the diabetic lower extremity.
Anatomy oftheSkin
The normal adult skin consists of epidermis, dermis, and sub­cutaneous tissue. The epidermis shows in most anatomic places, thin downward projections, called rete ridges. The epi­dermis contains four stratied squamous epithelium layers from supercial to deep (Fig. 12.1) [1, 2]. The rst layer, which is called stratum corneum, is composed of multiple lay­ers of anucleate keratinocytes. The stratum lucidum is a spe­cial layer of stratum corneum and is located just above the stratum granulosum and below the stratum corneum. We can nd this thin layer only in the thick skin of the palms, soles, and digits. It is mainly composed of eleidin, a protein rich in lipids which act as a barrier to water. The second layer, stratum granulosum, consists of one to three layers of attened cells
P. Chatzipantelis Medical School, Democritus University of Thrace, Alexandroupolis, Greece
E. A. Valsami · A. Veves (*) The Rongxiang Xu, MD, Center for Regenerative Therapeutics, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA e-mail: aveves@bidmc.harvard.edu
A. Kafanas Lincoln County Hospital, Lincoln, Lincolnshire, UK
positioned parallel to the surface. Their cytoplasm contains keratohyline granules consisting of keratin, prolagrin, loric­rin, and trichohyalin, proteins which play an important role in the process of cornication. When the keratinocyte differenti­ation process begins, these granules maturate and become enlarged, which results to the conversion of keratin tonola­ments into a homogenous keratin matrix, which is considered a very important step in cornication. The keratohyalin gran­ules are essential for the skin moisturization and UV protec­tion. Stratum spinosum, the third layer, consists of ve to ten layers of keratinocytes with desmosomes. These are adhesive intercellular junctions that mechanically integrate adjacent cells by coupling adhesive interactions mediated by desmo­somal cadherins to the intermediate lament cytoskeletal net­work. The desmosomal cadherins are connected to intermediate laments by a dense clusters of cytoplasmic plaque proteins which consist of members of the armadillo gene family, including plakoglobin and plakophilin and members of the plakin family of cytolinkers, of which desmoplakin is one of them. The Langerhan cells are interspersed among the kerati­nocytes of this layer. These cells are tissue resident dendritic/ macrophages. They transmit to the immune system the micro­environmental context in which they encounter foreign pro­teins and play a crucial role in helping the immune system to respond appropriately [3]. The innermost layer of the epider­mis is the stratum basalis. This is a single layer of cells, which is mainly made of basal precursor of the keratinocytes of the epidermis. Melanocytes and Merkel cells are the two other cell types which are found dispersed among the basal cells in the stratum basalis. Melanocytes are highly differentiated cells that produce melanin pigment inside melanosomes. Melanin provides pigmentation to the skin, eyes, and hair and also absorbs harmful UV (ultraviolet) rays and protects cells from damage. Melanocytes are dark and dendritic in shape [4]. Merkel cells are special type of cells derived from neural crest cells. These cells are located in the basal epidermal layer. They are very close to the nerve endings which receive the sensation of touch. Merkel cells also contain neuroendocrine substances that may act as hormones [5].
© The Author(s), under exclusive license to Springer Nature Switzerland AG 2024 A. Veves et al. (eds.), The Diabetic Foot, Contemporary Diabetes, https://doi.org/10.1007/978-3-031-55715-6_12
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Sublamina densa r
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The epidermis is based on basement membrane which is better visible with histochemical stains such as PAS and Alcian Blue and silver nitrate stains. These special stains show a band of polysaccharides and reticulum. The role of the basement membrane is to connect and functionally separate the epider­mis and the dermis. As it has become evident from transmis­sion electron microscopy, we can see that the basement membrane consists of Lamina lucida, an electron density region, containing laminins. Below it is the Lamina densa an electron dense region, of which a major component is collagen IV and the Sublamina densa which is located in upper papil­lary dermis and contains loops of type VII collagen and
Fig. 12.1 Normal skin. H&E stain
anchoring brils (Fig.12.2) [6]. The basement membrane con­tains hemidesmosomes that are attached to the basal cell kera­tinocytes tonolaments. Hemidesmosomes are multiprotein complexes that enable the stable adhesion of basal epithelial cells to the underlying basement membrane [7]. Hemidesmosomes contain plaque proteins which are involved in intermediate lament anchoring including BPAG1, BPAG2, integrin α6β4, and p200. Lamina lucida also contains variable protein structures, associated with anchoring laments. Any defects in basement membrane zone adhesive molecules attributable to autoantigens or gene defects can play a crucial role in bullous dermatoses and wound healing [8].
Meissner’s corpuscles which are encapsulated nerve­endings are responsible for sensitivity to light pressure. They are mostly concentrated in thick hairless skin, especially on the nger pads and they are primarily located in glabrous skin just beneath the epidermis in papillary dermis. The Vater-Pacini corpuscles, which are located in the deeper level of the dermis, are large nerve-ending organelles that generate a sense of pressure. They are found commonly in the nipple and anogenital region. Pain, temperature, and itch­ing sensation are transmitted by unmyelinated nerve bers that end around hair follicles and in the papillary dermis. The skin is supplied with sensory nerves and autonomic nerves, which permeate the entire dermis with nerve bers and exhibit frequent branching. Intra-epidermal nerve endings are conventionally described as passing freely in between keratinocytes. These are responsible for cutaneous sensation of temperature, itch, touch, and pain. They show variable distribution in different anatomical sites. Studies in human skin biopsies conducted by confocal laser scanning micro-
Fig. 12.2 Protein micro- anatomy in basement membrane. (Reproduced from The Biology of the Basement Membrane. Plastic Surgery key.
2019. https://plasticsurgerykey.com/
the- biology- of- the- basement- membrane/)
“LAMINATED” MODEL OF THE EPIDERMAL BASEMENT MEMBRANE
Basal keratinocyte
Keratin intermediate
filaments
Hemidesmosome
Plasma membrane
Lamina lucida
Anchoring filaments
Lamina densa
egion
Anchoring fibrils
Microfibrils
Microthread-like fibers
Interstitial collagens
Anchoring plaques
Keratin 5
Keratin 14
Plectin, BPAG1 BPAG2, integrin a
HSPG Laminins 5, 6, & 10* Type IV collagen Nidogen, HSPG
Type VII collagen Linkin, fibulins Fibrillins, LTBP, elastin Type IV collagen Types I and III collagen
6b4
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scope show that intra-epidermal nerve endings may play an important role in interactions between nervous system, kera­tinocytes, and immune system [9].
The papillary dermis is the uppermost layer of the dermis, intertwines with the rete ridges and is composed of ne and loosely arranged collagen bers mostly type I and some type III.It also contains elastic bers which are typical sparse, thin, and branching. Terminal capillary vessels, small nerve bers, Meissner corpuscles in acral skin, and touch receptors are present in papillary dermis. Positioned under the papillary der­mis is the much thicker reticular dermis which is composed of densely-packed collagen bers. At least eight different types of collagen are found in human skin. Reticular dermis is the primary location of dermal elastic bers. The dermis contains many cell types. Fibroblasts are the principal cell types of the dermis, and they are responsible for the synthesis of collagen, elastic, and reticular bers. Histiocytes are tissue macrophages present within the dermis that assist the immune system. Mast cells are inammatory cells predominantly located in the peri­vascular areas of the dermis. Mast cells secrete vasoactive and proinammatory mediators important in inammatory reac­tions, collagen remodeling, and wound healing.
Dermal adnexal structures such as eccrine and apocrine glands, sebaceous glands, hair follicles, and their arrector pili muscle are present in papillary dermis. The vessels responsible for the blood supply of the skin are deep in the hypodermis. The branches of small arterioles and venules head upwards to form a deep and a supercial plexus. The deep plexus is located at the dermal/hypodermal junction. It provides the hypodermis and the deeper parts of the dermis with fatty tissue, including the capillaries for hair follicles, deep sebaceous glands, and sweat glands. The supercial subpapillary plexus is located just beneath the dermal papil­lae and acts as a supplier in the dermal papillae. Lymphatics are often inconspicuous in normal skin. Skin lymphatics are, in fact, rather large vessels with extremely attenuated walls principally lying as two plexuses which loosely follow the arteriovenous plexuses. They are only detected in blood ow stasis conditions when they become ectatic [10].
The subcutis also called the subcutaneous layer is a layer directly below the dermis and serves to connect the skin to the underlying tissue. It is not a part of the skin per se, although the border between the hypodermis and dermis is difcult to discern. The hypodermis consists of well- vascularized, loose connective tissue and mature adipose tissue.
Dermal Matrix andInterstitial Fluid inDM
The dermal interstitial uid lls the spaces between the der­mal matrix bers and contains mainly glycoproteins, water, electrolytes, and plasma proteins. Collagen bers, which are the major component of the dermis matrix, provide the skin
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Fig. 12.3 Normal skin. Masson’s trichrome stain shows thick collagen bundles in dermis (×100)
with tensile strength. Twenty-nine types of different collagen have been described in humans; however, more than 90% of the body’s collagen is represented by types I, II, III, IV, and V.Type I accounts for approximately 80% of the total amount of dermal collagen and is found in the large ber bundles of the reticular dermis (Fig.12.3). Depletion of type I procol­lagen in human leg skin has been reported in diabetic patients, both in the absence and in the presence of complica­tions, with depletion being worse in patients with ulcers [11]. Additionally, unlike diabetic patients without complications, signicant disarray of the dermal collagen bundles has been reported after light microscopic analysis of the skin of patients with foot ulcers [11]. The dermal interstitial uid may be mechanistically important in explaining skin altera­tions in diabetes. In addition, interstitial uid is a rich source of biomarkers that does not clot. It lls extracellular space in tissues, which means that interstitial uid biomarkers pro­vide systemic information due to their origins in blood and to their contact with cells in dermis.
Diabetes increases the degradation of collagen and elastic bers resulting alterations in the appearance such as loss of elasticity, increase in epidermal thickness and alterations in the in the form of wrinkles, and reduced ability to retain moisture, similar to skin aging [12, 13]. The results of the histology research were applied to the mode. A generally disorganized dermis has also been visualized by scanning electron microscopy of diabetic skin of 12-week-old Tsumura-Suzuki obese diabetic mice with smaller and less dense bers [14]. These data, in addition to indicating patho­logical deposition, also indicate collagen reduction in dia­betic skin. Similarly, decreased expression and production of dermal type I collagen has recently been described in Alloxan-treated mice with overt DM and also in mice with blood glucose uctuations [15]. Type III, also known as fetal collagen or reticulum bers, represents up to 10% of dermal
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collagen. This type of collagen is prevalent during fetal life; however, in post fetal life, it is limited to the papillary and adventitial dermis. Furthermore, it serves as a framework on which type I collagen is synthesized. Decreased collagens I and III content in diabetic skin are associated with a reduced collagen I/III ratio. However, this decreased collagen content is associated with increased gene expression of enzymes involved in collagen synthesis and decreased production of factors that promote collagen degradation. This suggests that the defect in collagen protein content in diabetic skin at base­line is at the post-transcriptional level [16]. A lower I/III col­lagen ratio has been associated with reduced connective tissue stability [17], which might explain the lower mechani­cal stability of diabetic skin. Studies showed that rapid initia­tion of insulin treatment is clearly benecial for collagen recovery in the diabetic skin, offering an important source for the recommendation of early glycemic control in diabetic patients [18].
Elastic bers in the papillary dermis are thin and oriented perpendicularly to the skin surface (Fig.12.4), while in the reticular dermis, they are thicker and parallel to the skin sur­face. Elaunin and oxytalan bers are names for the elastic bers in the papillary dermis. Elaunin bers are bundles of microbrils that form a plexus oriented parallel to the dermal- epidermal junction. From this plexus, cross-linked elastic bers called oxytalan run upward and terminate at the basement membrane. Studies show decreased levels and degeneration of the elastic bers in diabetic patients [1921]. Another important component of the human dermal matrix/ interstitial uid, namely hyaluronic acid, has been studied in human skin in patients affected by insulin-dependent DM.A considerable reduction in hyaluronic acid, particularly in the region of the dermal epidermal junction, has been found in the dermis of patients with low joint mobility, whereas in
Fig. 12.4 Normal vulval skin. Orcein stain highlights brown stained elastic bers (×100)
patients with little or no impairment of joint mobility, hyal­uronic acid distribution predominantly resembles that of the normal condition [22].
Skin Inammation inDM
The normal mammalian response to skin injury occurs in three overlapping but distinct stages: inammation, new tis­sue formation, and remodeling. Inammation, the rst stage of wound repair, occurs immediately after tissue damage, and components of the coagulation cascade, inammatory pathways, and immune system are needed to prevent ongo­ing blood and uid losses, to remove dead and devitalized tissues, and to prevent infection. Dysregulated inammation is one of the primary pathologies associated with chronic wounds; thus, understanding of the causes and consequences of dysregulated inammation in diabetes is key to develop­ing effective treatments [23].
Dermatologic Conditions inDM
Acanthosis Nigricans
Acanthosis nigricans (AN) is one of the most recognized skin manifestation of diabetes. AN prevalence is currently on the rise particularly due to obesity and diabetes. AN is observed in fully 74% of obese patients and becomes a reli­able cutaneous marker of hyperinsulinemia in obese indi­viduals [24, 25]. AN is a symmetric eruption characterized by a hyper-pigmented, velvety, cutaneous thickening that appears predominantly in the neck, axilla, and groin areas. The histological ndings are papillomatosis and hyperkera­tosis, characterized by irregularly folded epidermis, exhibit­ing various degrees of acanthosis. Typically, the dermal papillae are projected upward, and the valleys in between them show mild to moderate acanthosis and lled with kera­totic material. The epidermis at the top and at the sides of the papillae appears thinned and the brown color of the lesions is due to the thickening of keratinin-containing supercial epi­thelium [26]. There are eight types of acanthosis nigricans: hereditary benign AN, obesity-associated, syndromic, malig­nant AN associated in particular with abdominal adenocarci­noma (gastric carcinoma), acral or benign AN, drug-induced (nicotinic acid and corticosteroids), and mixed. AN is a chronic but reversible condition. In obesity associated AN, the pathogenesis is related to high levels of circulating insu­lin, bound with insulin-like growth factor receptors and stim­ulates keratinocyte and dermal broblast growth. In the malignant form of AN, the associated growth factors secreted by underlying malignancy are believed to result in cutaneous changes of AN [27]. Acanthosis nigricans can occur in non-
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obese patients with diabetes due to malfunction of receptor binding. Three types have been described: Type A with insu­lin resistance due to a congenital defect of insulin receptors, Type B with autoimmune diseases and antibodies against the insulin receptor, and Type C insulin resistance are associated with a postinsulin receptor defect.
Treatment consists of treating the underlying cause. In the diabetic patient, weight control, dietary restrictions, and increased physical activity are of primary importance and have been proved to be most effective in controlling AN [28,
29]. Other treatment options include both laser therapy and
surgical excision. Topical keratolytics (e.g., salicylic acid, retinoic acid, and ammonium lactate) and oral isotretinoin can reduce thicker plaques in areas of maceration, decreas­ing odor and Psoralen plus UVA (PUVA) has been reported as benecial for symptomatic relief in cases of paraneoplas­tic acanthosis nigricans [30].
Necrobiosis Lipoidica
Necrobiosis lipoidica (NL) is a chronic, necrotizing, granu­lomatous skin disease that occurs primarily in individuals with diabetes, usually type I.It appears in the form of red non-scaling patches or plaques sharply demarcated with irregular contours. The edges are elevated, erythematous, and slightly indurated; the center of the lesion is atrophic, yellow-brownish, and may ulcerate (Fig.12.5). Lesions often start out small, but have a tendency to grow to several centi­meters in diameter. The major complication of the disease is the formation of an ulcer, mainly occurring after trauma. Infections can also occur. The ulceration is relatively fre­quent if lesions are large but perforation is generally rare. They may be single or multiple, most commonly distributed bilaterally on the lower extremities, particularly the pretibial areas, but may occur on the face, trunk, and upper extremi­ties as well. Histologically the whole of the dermis is affected by palisaded granulomatous inammation sparing the epi­dermis. The inammation often spreads into subcutaneous septae giving the false impression of subcutaneous pannicu­litis. Collagen degeneration without mucin component is demonstrated in the central of the lesion (Fig. 12.6). Furthermore, the periphery of the main lesion usually exhib­its sclerosis and sometimes lipid droplets associated with foam histiocytes are evident. In deep dermis, lymphoid fol­licles and plasma cells may be present. The latter are consid­ered to be a strong histological nding conrming the histological diagnosis. The differential diagnosis includes palisaded granulomatous dermatitis, among them being granuloma annulare, rheumatoid nodule, and necrobiotic xanthogranuloma (NX). In NL the degenerated collagen is pale, acellular, and horizontal in its distribution. This pattern has been linked to the appearance of a layer cake. Rheumatoid
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Fig. 12.5 NLD in a 16-year-old girl with T1DM and a patch on the leg with an atrophic, depressed, slightly yellow center, and well-dened raised purple edge
Fig. 12.6 Patchy lymphoplasmacytic inltration around blood vessels (arrows point to plasma cells, H&E ×200)
nodule granulomas tend to be larger and are usually located over bony prominence, near joints. Histologically they are located in the deep dermis, or in subcutis enclosing a central area with brin, which is homogeneously eosinophilic luck­ing mucin. NX typically shows a periorbital predilection. Histological ndings for NX include an inammatory mixed cellular population with Touton type giant cells, foamy his­tiocytes, and necrotic areas with neutrophilic debris involv­ing the dermis and subcutaneous tissue [20]. The cause of NL is unknown, but there are several proposed theories behind the pathophysiology of NL such as microangiopathic changes, abnormal collagen, altered lipid metabolism, and impaired immunity. The combination of microangiopathy, neuropathy, and the release of inammatory cytokines leads to the destruction of the collagen matrix, resulting in sclero­sis and granulomas formulation. Direct immunouorescence