Books for lectures / Gompert Signal Transd / Index
.pdfIndex
Note: Page numbers in italics refer to figures and tables
A
A23187 (524 Da), 191 ABC transporters, 207 Abel, John Jacob, 11, 13
AC1 (atypical C1 domain), 137, 138, 139, 141, 231, 500, 588, 591, 650
AC2, 135, 137, 138, 139, 141 AC4, 137, 138, 139, 141 AC5, 137, 138, 141, 231 AC6, 137, 138, 141, 231 AC7, 137, 138, 141
AC8, 137, 138, 141, 231 acetyl ester, 13 acetylcholine, 13, 27
receptors, 42–44 achaete, 717, 718, 720
achaete/scute (AS) complex, 711–712 aciclovir, 739
ACTH (adrenocorticotropic hormone), 4, 22, 62, 70
activating transcription factor-2, see ATF2
activating transcription factor-3, see ATF3
activation signals, 321 activator protein-1, see AP-1 ActR-IB, 605
ActR-II, 605
acute lymphoblastic leukaemia, see ALL
ADAM/TACE cleavage, 707, 713 ADAM10, 439, 707
adaptive immunity, 513 adaptors, 322
and effectors of ErbB receptor family, 319
adenomas, 145, 722
adenomatous polyposis coli protein, see APC
adenosine, 69, 70
adenylyl cyclase, 59, 69, 82, 85, 88, 90, 231–232
as coincidence detector, 139 cyclic AMP, 131–133
generated from ATP, 133 enzyme, 134
isoforms, 140 regulation, 134, 136
ADP ribosylation, 143–146 aluminium fluoride, 142 by Ca2 , 141
cholera, 143–146 forskolin, 142–143, 143
by GTP binding proteins, 137, 138–141
pertussis toxins, 143–146
by phosphorylation, 141–142 structural organization of, 134–136
adenylyl cyclases, 1, 8, 222 adenylyl cyclases, 5, 6, 222 adherens junctions destabilization,
417–419, 420
APC and localization of -catenin, 424–426
-catenin, axin, and APC in human cancers, mutations of, 437–438
-catenin, partners of, 426 cadherin in contact inhibition, 438 canonical Wnt pathway, 419–424 non-canonical signal transduction
pathways, 438
small intestine villous epithelium, 434–436
Wnt pathway, 426–434 adhesion molecules, 308, 375, 439
cadherins, 387–392
cartilage link proteins, 395–397 cell differentiation regulation,
417–440 claudins, 382–383 ICAM, 379
immunoglobulin superfamily, 378–379
integrin adhesion complexes and inside-out signalling,
397–398
outside-in signalling from, 398–400
integrins, 383–384
and cell proliferation, 403–406 and cell survival, 400–403 inactive to primed, 384–386 primed to active, 387
junctional adhesion molecules (JAMs), 382
names, naming, 378 occludin, 383 selectins, 392–395 SIGLECs, 380–382
T-cell activation, 515–517, 516, 518 adhesion receptor subfamily, 65–66 ADP ribosylation, 143–146
of -subunits, 146–147 ADP-ribose, 143, 144
structures of, 204
adrenaline, 2, 10, 11, 22, 25, 37–38, 70, 72, 73
adrenergic receptor, 38–42 agonists and antagonists, 40 structures of drugs interacting
with, 41 adrenocorticotropic hormone, see
ACTH AEE788, 743 Aequorea, 192 AF-1, 281
AF-2, 281, 282, 287, 288 AGC, 244, 551, 554
agonists, 38–39, 40, 55, 67, 85 Akt, 526, 544
see also PKB aldosterone, 4, 278
791
Index
ALK-5 (activin-receptor like kinase-5), |
mutations in cancer, 437–438 |
Bayliss, William Maddock, 10 |
605, 610, 627 |
apocalmodulin, three-dimensional |
BCR (B-cell receptor), 381 |
ALL (acute lymphoblastic leukaemia), |
structure of, 226 |
Bcr-Abl, mutations in, 752–754, 753 |
532, 704, 726 |
AR (androgen receptors), 276, 471, |
Bcr-Abl fusion story, 746–749 |
-actinin, 223, 236 |
669 |
domain architecture, 747 |
-adrenergic receptors, 38, 39, 69, 72 |
Arabidopsis, 4 |
origin, 746 |
-amino-3-hydroxy-5-methyl-4- |
AraC, 740 |
Beatson, George Thomas, 273 |
isoxazolepropionic acid, see |
arachidonate, 143, 147 |
benzo[a]pyrene, 577 |
AMPA |
arachidonic acid (5,8,11,14- |
Berdoe, Edward, 9 |
-bungarotoxin |
eicosatetraenoic acid), 26, 206, |
Bernard, Claude, 5, 45 |
blocks neuromuscular transmission, |
676 |
Best, 544 |
48 |
archaea, 132, 472, 764 |
-galactosidase, 133 |
staining of nicotinic receptors, 48 |
ARE, 579 |
-adrenergic receptors, 38, 39, 69, 72, |
-subunit, 51, 83, 88 |
area code, 377 |
245, 355, 777 |
determine G protein diversity, |
armadillo, 421, 723 |
agonists, 38–39, 40 |
89–92 |
arrestins, 98, 99, 100 |
antagonists, 39–40, 40 |
interacting with membrane and |
aspirin, 27, 357, 543 |
hydropathy plots of, 56 |
other proteins, 92–94 |
astrocytes, 196, 587, 589 |
receptors distinction, 40–42 |
-type mating factors, 113 |
ATF2 (activating transcription factor- |
-adrenergic transduction system, in |
aluminium fluoride, 142 |
2), 464, 581, 582 |
insect cells, 117–119 |
Alzheimer’s disease, 43, 707 |
ATF3 (activating transcription factor- |
-arrestins, 348 |
Amanita muscaria, 44 |
3), 466, 608, 616 |
-blockers, 40, 41 |
amino acids, 24, 245, 388, 472, 563, |
ATP, 21, 54, 81, 200, 207, 246, 422, 745, |
-catenin, 426–434 |
668, 771, 781 |
752, 783–784 |
-catenin/TCF transcription |
AMP (anti-Mullerian hormone), 627 |
cAMP generated from, 133, 133 |
complex., 430 |
AMP-activated kinase, see AMPK |
economical manufacture of, 82, 83 |
destruction, 427 |
AMPA ( -amino-3-hydroxy-5-methyl- |
atrial natriuretic factor, see ANF |
localization, 424–426, 432 |
4-isoxazolepropionic acid), 55, |
Atropa belladonna, 44 |
mutations in cancer, 437–438 |
209, 215 |
atropine, 13, 16, 17, 44, 45 |
partners, 426 |
AMPA receptors, 55 |
atypical C1 domain, see AC1 |
Wnt signalling, 421–422 |
Amphioxus, 4, 278 |
atypical PKCs |
-COP, see RACKII |
AMPK (AMP-activated kinase), 563 |
isoforms, 255 |
-endorphin, 4 |
ancestral steroid hormone receptor, 4 |
proteins interacting with, 262–263 |
-hairpin, 609, 613 |
androgen receptors, see AR |
autocrine, 25, 26, 147, 584, 744 |
-subunit, 83 |
ANF (atrial natriuretic factor), 4, 22 |
Axel, Richard, 178 |
2-adrenergic receptor |
annexins, 236 |
Axin, 611 |
membrane topology of, 57 |
‘anoikis’, 400 |
and APC complex, 426 |
-subunits, 94–97 |
antagonists, 39–40, 40 |
mutations in cancer, 437–438 |
membrane tethers of, 96 |
antennapedia, 712 |
axons, 177, 178, 589 |
as signalling proteins, 97 |
anticancer drugs, 740 |
|
PIX, 588 |
anti-inflammatory drugs, 488 |
B |
betaglycan, 605 |
antimetabolites, 737–739 |
bHLH protein, 717 |
|
anti-Mullerian hormone, see AMP |
B-lymphocyte receptor, 514 |
bile acids, 277, 290 |
AP-1, 464, 521, 578–580, 591, 627 |
B7, 516 |
binding affinity, measurement of, |
complexes, 579 |
Bacillus acetylcholini, 14 |
30–31 |
regulation, 580–581 |
Bacillus anthracis, 334 |
binding site heterogeneity, 30 |
AP-2, 713, 715, 720 |
Bacq, Zenon, 16 |
bithorax, 712 |
APC (adenomatous polyposis coli |
BAMBI (BMP, activin membrane- |
BK virus, 530 |
protein), 425, 436, 437, 588, |
bound inhibitor homologue), |
Black, Sir James, 739 |
590, 591, 722 |
607, 621, 628 |
bleomycin, 740 |
and -catenin localization, 424–426 |
Banting, 544 |
BMJ contrasts, 8 |
different mutations, 437 |
Bayer Company, 543 |
BMP proteins, 599, 619 |
792
Index
BMP2 (bone morphogenetic protein- |
CaMKIII, 229 |
Caenorhabditis elegans, 255, 278, 328, |
2), 628 |
CaMKIV, 229 |
331–332, 567, 585, 586, 599, |
Bordetella pertussis, 143, 144 |
Ca2 -calmodulin dependent enzymes |
726 |
bradykinin, 26 |
Ca2 -calmodulin-sensitive |
calabar bean, 16 |
Brat (brain tumor protein), 436 |
adenylyl cyclases and |
calcineurin, 223, 230–231, 520, 682 |
bride-of-sevenless (boss), 329 |
phosphodiesterase, 231–232 |
calcineurin B, 519 |
Brown-Séquard, Charles Edouard, 5 |
calcineurin, 230–231 |
calcium |
Bruegel, Pieter, 14 |
nitric oxide synthase, 232–233 |
and evolution, 187–188 |
Btk Bruton’s tyrosine kinase, 786 |
plasma membrane Ca2 ATPase |
as negative regulator, 167–170 |
Buck, Linda, 178 |
(PMCA), 229 |
calcium-binding by proteins, 221, |
Bungarus multicinctus, 48 |
Ras guanine nucleotide exchange |
222–223 |
busulphan, 740 |
factor, 229–230 |
Ca2 signals, decoding, 224 |
Butenandt, Adolf Friedrich Johann, |
Ca2 -calmodulin-sensitive |
calmodulin, 225–226 |
274 |
adenylyl cyclases and |
kinases, regulated by, 226–229 |
|
phosphodiesterase, 231 |
polypeptide modules binding Ca2 , |
C |
Ca2 channels, store-operated, |
224 |
210–211 |
troponin C, 226 |
|
c-Abl, 742, 746, 747, 748, 752 |
Ca2 -induced Ca2 -release, 202 |
calcium-binding motifs and domains, |
inhibitor of, 750–752 |
Ca2 influx through plasma |
779 |
regulation of, 749 |
membrane channels, |
calcium-dependent enzymes, not |
structure of, 748 |
208–209 |
regulated by calmodulin, 233 |
c-Cbl, 519 |
receptor-operated channels, 209 |
calpain, 234 |
c-Fos, 342, 616 |
TRPM2 channels, 209 |
cytoskeletal proteins, 236 |
c-Jun, 342, 616 |
voltage-operated channels, |
DAG kinase, 234 |
c-myc, 342–343, 614, 709 |
208–209 |
neuronal calcium sensors, 233–234 |
C-Raf, 334–335 |
Ca2 ionophores, to rise Ca2 , 191 |
Ras GEFs and GAPs, 234–236 |
C-TAK1, 346 |
Ca2 microdomains and global |
synaptotagmin, 234 |
C1 domains, 256 |
cellular signals, 214 |
calcium effectors |
as protein–protein interaction |
in electrically excitable cells, |
Ca2 -calmodulin dependent |
domain, 256 |
214–215 |
enzymes |
C2 domain, 224, 256–257, 780–781 |
in non-excitable cells, 216 |
Ca2 -calmodulin-sensitive |
C3 and C4 domains, 257 |
Ca2 mobilization and Ca2 entry, |
adenylyl cyclases and |
Ca2 , 519 |
193–194, 194 |
phosphodiesterase, 231–232 |
free, bound, and trapped, 189–190 |
Ca2 -promoted Ras inactivator, see |
calcineurin, 230–231 |
regulation of adenylyl cyclase, 141 |
CAPRI |
nitric oxide synthase, 232–233 |
polypeptide modules binding, 779 |
Ca2 -sensitive photoproteins, 192 |
plasma membrane Ca2 ATPase |
Ca2 and Mg2 |
Ca2 signals |
(PMCA), 229 |
approximate levels of, 189 |
decoding, 224 |
Ras guanine nucleotide |
distinguishing, 188–189 |
in electrically excitable cells, |
exchange factor, 229–230 |
Ca2 -ATPase (PMCA), 222 |
214–215 |
calcium-binding by proteins, 221 |
Ca2 -ATPase (SERCA), 190, 222 |
cardiac muscle, 215 |
Ca2 signals, decoding, 224 |
Ca2 by cyclic ADP-ribose and NAADP, |
nerve cells, 215 |
calmodulin, 225–226 |
elevation of, 204–206 |
skeletal muscle, 214–215 |
kinases, regulated by calmodulin, |
Ca2 by sphingosine-1-phosphate |
Caax motif, 105 |
226–229 |
(S1P), elevation of, 206–208 |
cachexia, 493 |
polypeptide modules binding |
Ca2 calmodulin, 619 |
CADASIL, 726 |
Ca2 , 224 |
pathway, 353 |
cadherins, 387–392, 387, 389, 426 |
troponin C, 226 |
Ca2 -calmodulin-activated protein |
in central nervous system, 439 |
calcium-dependent enzymes, not |
kinases (CaM-kinases), 226, |
in contact inhibition, 438 |
regulated by calmodulin, 233 |
228 |
subfamilies, 390–391 |
calpain, 234 |
CaMKI, 228 |
cADPR (cyclic ADP-ribose), 205 |
cytoskeletal proteins, 236 |
CaMKII, 228–229 |
structures, 204 |
DAG kinase, 234 |
793
Index
calcium effectors (continued ) |
carboplatin, 737, 740 |
adenomatous polyposis coli |
neuronal calcium sensors, |
carcinoma, 299 |
(APC) and localization of |
233–234 |
CARD domain, 521 |
-catenin, 424–426 |
Ras GEFs and GAPs, 234–236 |
cardiac muscarinic K channel, 97 |
canonical Wnt pathway, 419–424 |
synaptotagmin, 234 |
cardiac muscle, 215 |
contact inhibition, cadherin in, |
calcium signaling, paradigms of |
CARMA1, 518, 521, 522 |
438 |
skeletal muscle, initiation of |
Carrel, Alexis, 303 |
non-canonical signal |
contraction in, 237–239 |
cartilage link proteins, 395–397, |
transduction pathways, 438 |
smooth muscle contraction, 239 |
396 |
small intestine villous epithelium, |
triggering neurotransmitter |
CAS (Crk-associated substrate), 400, |
434–436 |
secretion, 236–237 |
401 |
signalling through adhesion |
calcium influx factor, see CIF |
casein kinases, see CK |
molecules, examples of, 439 |
calcium sensors and metabotropic |
cassette, 711 |
AM and differentiation |
receptors, 63–64 |
catecholamines, 3, 38 |
regulation, 439 |
calcium signaling, paradigms of |
catenins, 392 |
cadherin in the central nervous |
neurotransmitter secretion, |
Cbl, 349, 521, 715 |
system, 439 |
triggering, 236–237 |
CBP (CREB binding protein), 534–535, |
Raf-1-mediated cell |
skeletal muscle, initiation of |
628 |
transformation, occludin |
contraction in, 237–239 |
CD3, 516, 517, 658 |
prevention of, 440 |
smooth muscle contraction, 239 |
CD4, 516, 517 |
TGF type I receptor–occludin |
calcium signals, in non-excitable cells, |
CD8, 516, 517 |
interactions, 439–440 |
216 |
CD22, 381 |
cell division cycle protein 42, see |
CalDAG-GEF, 498 |
CD28, 516, 521 |
Cdc42 |
calmodulin, 222, 225–226, 225, 519, |
CD34, 393 |
cell fate, determination of, 433 |
620 |
CD44, 395–397 |
cell proliferation and integrins, |
calmodulin kinases, 222, 226–229 |
CD45 and immune cell function |
403–406 |
calpain, 223, 234 |
regulation, 528, 535, |
cell transformation in cancer, 308–309 |
calreticulin, 222 |
658–660 |
central nervous system, see CNS |
calsequestrin, 222 |
CD95, 489 |
Cephalochordata, 4 |
Cambrian Explosion, 4, 315 |
CDC25 gene product, 111, 330 |
cetuximab, 743, 744 |
CAMK, 244 |
Cdc42 (cell division cycle protein 42), |
CFTR (cystic fibrosis transmembrane |
cAMP, 34, 180–181 |
500, 590, 591 |
conductance regulator), 136, |
cAMP gated K channel, 251 |
CDK2, 617, 675, 753 |
228 |
cancer |
CDK4 (cyclin dependent protein |
cGMP, 159, 180–181, 232 |
definitions, 306, 310 |
kinase-4), 617, 619, 626 |
CGP 531716, 750 |
essence of cancer, 307 |
CDK8, 709, 710, 712 |
CGP 57148B, 750 |
genetic alterations, 308–309 |
cell activation, by over-expression of |
chaete, 720 |
malignancy, alterations dictating, |
receptor, 68–69 |
chelating agents, 189 |
307–308 |
cell–cell contacts, 418, 419 |
chemokines, 26, 489, 494–500, 526 |
and transformation, 309–310 |
cell cycle inhibitors, FAK-mediated |
chemotactic peptides, 486 |
cancer drugs testing, different |
regulation of, 404–405 |
chemotaxis, 494 |
approach in, 754–757 |
cell cycle regulation, 343–344 |
chemotherapy, 736, 738 |
cancer therapy, alternative targets |
cell differentiation regulation, |
antimetabolites, 737–739 |
for, 742 |
adhesion molecules in |
combination chemotherapy, |
candela (cd), 168 |
adherens junctions destabilization, |
740–741 |
canonical Wnt pathway, signalling |
417–419 |
cytotoxic antibiotics, 737 |
through, 419–424, 429 |
-catenin, Axin, and APC in |
drugs, good and bad, 739–740 |
canonical’ NF- B pathway, 462 |
human cancers, mutations of, |
purine pathway to, 739 |
CAPRI (Ca 2 -promoted Ras |
437–438 |
chlorpromazine, 53 |
inactivator), 235 |
-catenin, partners of, 426 |
cholecystokinin, 21, 22 |
CAR (constitutive androstane |
( -catenin-dependent) canonical |
cholera-induced diarrhoea, |
receptor), 284, 290 |
Wnt pathway, 426–434 |
mechanism of, 143 |
794
Index
cholera toxin, 143–146 |
corollary, 4 |
CYP3A4, 290, 291 |
cholinergic receptor, 43 |
‘corpora non agunt nisi fixate’, 452 |
CYP7A1 gene, 290 |
cholinergic receptor subtypes, 44 |
cortisol, 4 |
CypA (cyclophilin A), 683 |
ligand-gated ion channels, 54–55 |
Corynebacterium diphtheriae, 143 |
cys-loop receptors, 54 |
muscarinic receptors, 45–46 |
COUP-TF family, 279 |
cystic fibrosis transmembrane |
nicotinic receptors, 44–45 |
Cowden disease, 560 |
conductance regulator, see |
architecture of, 50–54 |
cPML (cytosolic promyelocytic |
CFTR |
ion channels, 46–49 |
leukemia protein), 628 |
cytochrome c, 403 |
cholinesterase, 43 |
CRACM, 211 |
cytochrome P450 proteins, 289, 290 |
cholinesterase inhibitors, 43 |
CRD (cysteine-rich domain ), 334, 336 |
cytokine-induced signalling, 527 |
Chondrodendron tomentosum, 45 |
CRE, 579 |
cytokines, 26, 305, 306, 489 |
chorda, 618 |
CREB, 578 |
Wnt family, 420–421 |
chronic myelogenous leukaemia, see |
transcription factor, activation of, |
cytoskeletal proteins, 236 |
CML |
248–250 |
cytosol, 274 |
Chu Chen-Heng, 274 |
CREB-mediated gene expression, |
cytosol Ca2 , 190–191 |
chymotrypsin, 65, 766 |
pathways leading to activation |
concentration elevation, 198 |
CI-1033, 743 |
of, 249 |
Ca2 influx through plasma |
ciclosporin, 683 |
CREB1 (cyclic cAMP responsive |
membrane channels, 208–209 |
ciclosporin A, 230, 520, 683 |
element binding protein-1), |
Ca2 release from intracellular |
CICR, 202–203 |
591 |
stores, IP 3 and ryanodine |
CIF (calcium influx factor), 212–213 |
cripto, 605–606 |
receptors, 200–203 |
cisplatin, 737, 738, 740 |
Crk (CT10 virus regulator of protein |
by cyclic ADP-ribose and NAADP, |
CK (casein kinases), 244, 428–430 |
kinase), 325 |
204–206 |
claudins, 382–383, 382 |
Crk adaptor protein, 397 |
depleted stores, replenishing, |
Claviceps purpurea, 14 |
CRM1 (chromosome region |
209–213 |
Clermont, 43, 44 |
maintenance-1 protein |
by sphingosine-1-phosphate, |
clonidine, 39, 70 |
homology), 628 |
206–208 |
Clostridium perfringens, 383 |
CRMP2 (collapsin respone mediator |
monitoring in individual cells, |
CMGC, 244 |
protein-2), 590, 591 |
194–195 |
CML (chronic myelogenous |
Croonian lecture (1906), 17 |
cytosol-resident receptors, 282–284, |
leukaemia), 532, 742, 746 |
croton oil, 253 |
283 |
successful treatment of, 752 |
Croton tiglium, 253 |
cytosolic PTPs, 644–645 |
CNS (central nervous system), 21, 43 |
Csk (c-Src kinase), 534, 535 |
cytotoxic antibiotics, 737 |
coactivators, 287–288 |
CSL, 704, 708, 709, 724 |
cytotoxic T cells, 515, 625 |
cochaperone p23, 282 |
CTP, 81 |
cytotoxic T lymphocytes (CTL), 515, |
Cohen, Stanley, 300, 301 |
‘cuddle hormone’, 28 |
624, 624 |
Coleus forskohlii, 142 |
curari, 17 |
|
Coley’s toxins, 488 |
cyclic ADP-ribose, see cADPR |
D |
colour discrimination, 163 |
cyclic AMP (cAMP), 34, 131–133 |
|
combination chemotherapy, 740–741 |
and amplification of signals, |
D-Ras, 101 |
common mediator Smads, 608, 611 |
245–246 |
DAG (diacylglycerol), 147, 234, 326, |
communication, levels of, 376 |
generated from ATP, 133 |
517, 518, 519, 545 |
complement, 377 |
cyclic GMP, 166–167 |
PKC activation, 253, 255, 256, 259 |
confocal microscopy, 196 |
cyclic nucleotide phosphodiesterase |
sources, 259, 260 |
constitutive androstane receptor, see |
(1A–C), 223 |
DAG kinase, 223, 234, 263 |
CAR |
cyclin-dependent kinases, 291, 785 |
Dale, Henry Hallett, 12, 13, 185 |
contact inhibition, cadherin in, 438 |
cyclin dependent protein kinase-4, |
dance of death, 14 |
conventional agonists, 67 |
see CDK4 |
Danio rerio, 713 |
conventional PKCs, 255 |
cyclo-oxygenase, 544 |
Darmlumen, 618 |
core promoter, 287 |
cycloheximide, 350 |
daughterless, 717 |
corepressors, 288–289 |
cyclophilin A, see CypA |
DBD (DNA-binding domain), 281 |
Corkscrew (Csw) pathway, 655 |
cyclophosphamides, 740 |
DD (death domain), 455, 456, 489, 492 |
795
Index
death domain, see DD |
Drosophila Groucho, 424 |
EGF receptor (EGFR), 302, 318, 326, |
decapentaplegic (Dpp), 607 |
Drosophila melanogaster, 318, 328 |
350, 405 |
Delta, 337, 703, 706, 713, 714, 724 |
DSL proteins, 703 |
activation, 321 |
Delta-like 3 (DLL3), 726 |
DSP (dual specificity phosphatases), |
EGTA, 189, 189 |
DeltaD, 722 |
644, 645, 661, 663 |
Ehrlich, Paul, 452, 736 |
Deltex, 715 |
in development, 665–667 |
eicosanoids, 26, 277 |
dendrites, 589 |
MAP kinases regulation, 662–665 |
receptor binding, 61 |
density enhanced PTP (DEP-1), |
PTEN, 668–671 |
eiF-4E (initiator factor-4E), 341, 559, |
657–658 |
dual specificity phosphatases, see DSP |
566 |
dephosphorylation, 250, 433, 438, |
Dvl (dishevelled), 592 |
EILDV, 378 |
528–529, 641 |
dynamin, 713 |
ELAM-1 (endothelium leucocyte |
deribosylation, 146–147 |
dynestrol, 274 |
adhesion molecule-1), 378 |
desensitization, 54, 100 |
|
electric organs, 47–48 |
desmoplakin, 392 |
E |
Electrophorus, 48 |
DFP (diisopropyl fluorophosphate), 54 |
11-cis–retinal, 58, 161, 163, 165, 170 |
|
DHPR (dihydropyridine receptor), 208, |
E-cadherin, 388, 419, 433, 625 |
Elion, Gertrude, 739 |
214, 237 |
E. coli, 133, 136, 753 |
Elk (Ets-like factor), 342 |
diabetes mellitus, 544, 557, 648, 650 |
E-selectin, 378, 395, 493 |
ENaC Na channel, 469 |
diacylglycerol, see DAG |
E2-ubiquitin conjugation protein |
endocrine, 25 |
Dickkopf (Dkk), 431 |
(UbcH7), 620 |
endocytosis, 713–714, 715, 716 |
Dictyostelium, 115, 136, 150, 771 |
E3-ubiquitin ligases, 469, 470 |
endoglin, 605, 606 |
Dictyostelium discoides, 133 |
early response genes, 342–343 |
endorphins, 4 |
Dictyostelium discoideum, 771 |
EB1 (end binding protein-1), 592 |
endothelial nitric oxide synthase, see |
dihydrofolate reductase, 739 |
Eccles, John, 16 |
eNOS |
dihydropyridine receptor, see DHPR |
EDRF (endothelium-derived relaxing |
endothelial cell adhesion molecule, |
dihydropyridines, 208 |
factor), 232 |
489–492 |
diisopropyl fluorophosphate, see DFP |
EEA-1 (early endosome antigen-1), |
endothelium-derived relaxing factor, |
dishevelled protein, 589, 590, 723 |
778, 786 |
see EDRF |
dissociation constant (KD), 30, 188 |
eEF2 (elongation factor 2), 229 |
Enhancer of Split, 709, 711–712 |
‘distorted’ conformation, 53 |
EF-hand motif, 224, 779 |
eNOS (endothelial nitric oxide |
DJ-1, 669 |
effector enzymes coupled to GTP |
synthase), 292 |
DNA binding, 284–257, 285 |
binding proteins |
ENTH/ANTH, 777 |
DNA-binding domain, see DBD |
adenylyl cyclase |
Epac, 251–252, 252 |
Domagk, Gerhard, 739 |
ATP, cAMP generated from, 133 |
Ephedra sinica, 4 |
dopamine, 38, 42, 68 |
cyclic AMP, 131–133 |
ephedrine, 3–4 |
Dos, 657 |
regulation, 134, 136–146 |
Ephrin (Eph) receptors, 435 |
doxorubicin, 738, 740 |
structural organization, 134–136 |
epidermal growth factor, see EGF |
dPKC1 (Drosophila PKC-1) (D. |
ADP-ribosylation of -subunits, |
epinephrine, see adrenaline |
melanogaster), 592 |
146–147 |
epithelial adherent junctions, 392, |
Dpp gene, 607 |
phospholipase C, 147 |
393 |
Dras pathway, 655 |
inositol phospholipids, signalling |
epithelial cells migration, in intestinal |
Driesch, Hans, 701 |
role for, 147 |
crypts, 434 |
Drk protein, 330–331 |
isoenzymes of, 148–150 |
epithelial mesenchymal |
Drosophila, 101, 210, 255, 264, 283, |
phospholipase family, 147–148 |
transformation (EMT), 419, 419, |
587, 599, 709, 711, 712, 713 |
PLC , 150 |
623, 625–627 |
adenomatous polyposis coli (APC), |
regulation, 151–153 |
EPO (erythropoietin), 515 |
425 |
effector genes, of Notch signalling, |
Epsin, 713, 779 |
Notch and sensory progenitor cells, |
709–712 |
ER (estrogen receptor), 277, 284 |
716–727 |
EFS (embryonal Fyn-associated |
ErbB receptor family, 318, 319 |
Wnt pathway, 420, 421, 422, 423, |
substrate), 401 |
ErbB2, 318, 405, 742, 743, 745 |
434 |
EGF (epidermal growth factor), 4, 23, |
ergot, 14–16 |
X chromosome of, 701 |
291, 301–302, 405, 743 |
ergotamine, 14 |
796
Index
ERK (extracellular signal regulated |
neurotransmitters and |
G proteins, 83, 494 |
kinase), 291, 349–353, 583 |
neuropeptides, 27 |
7TM receptor linkage, 83 |
activation of, 250–251 |
vasoactive agents, 26–27 |
-subunits, 88 |
ERK1, 349, 592 |
intracellular messengers, 27, 28 |
diversity, 89–92 |
ERK2, 349 |
binding affinity measurement, |
evolutionary relationship, 91 |
ERK3, 350 |
30–31 |
functions, 90 |
ERK4, 350 |
binding heterogeneity, 30 |
sites interacting with |
ERK5, 351 |
cAMP, 34 |
membranes/proteins, 92–94 |
erlotinib, 743, 745 |
down-regulation of receptors, |
-Subunits, 94–97 |
erysipelas, 488 |
33–34 |
functions, 97 |
erythropoietin, see EPO |
KD and EC50, 31–32 |
negative feedback signals, 98 |
eserine, 16, 43 |
ligands to receptors, binding of, |
signal transmission, 97 |
estradiol, 3, 4, 292 |
29–30 |
activation without subunit unit |
estrogen receptor, see ER |
spare receptors, 32–33 |
dissociation, 111–119 |
Ets (E-26), 342 |
5 -AMP, 246 |
GTPase cycle, 84–86 |
eubacteria, 132 |
FK506, 200, 683 |
heterotrimeric, 83–84 |
European Pharmacopoeia, 11 |
FKBP12, 200, 683 |
monomeric, 83 |
EVH1 domains, 776 |
fluorescence resonance energy |
receptor affinity modulation, 87 |
EXEL 7647/EXEL 0999, 743 |
transfer, see FRET |
switching off activity, 86–88 |
exocytosis, 234 |
fluorescent Ca2 indicators, 192–193 |
GABA ( -aminobutyric acid), 27, 55 |
extracellular matrix, 397, 400 |
fluorophores, 196 |
GABA receptor, 45 |
extracellular signal regulated kinase, |
fMLP, 494 |
gag, 101, 742 |
see ERK |
focal adhesion complexes, 387, 400 |
gallamine, 45 |
|
focal adhesion kinase, see FAK |
-aminobutyric acid, see GABA |
F |
follicle stimulating hormone, see FSH |
-secretase, 439, 707, 708, 714, 722 |
formylmethionine (fMet), 486 |
GAPs (GTPase activating proteins), |
|
F-actin, 236 |
forskolin, 142–143, 143 |
108, 235 |
Fab fragment, 745 |
Fos, 342, 580 |
gastrin, 21, 22 |
FAK (focal adhesion kinase), 400, 401, |
Fos-c (feline osteosarcoma cellular |
GCAP (guanylyl cyclase activating |
403, 404–406 |
homologue), 592 |
protein), 168 |
farnesyl transferase inhibitors, 105, |
Foster’s Textbook of Physiology, 5 |
GCN4, 578 |
106 |
4E-BP1, 566 |
gefitinib, 743, 746 |
FAS ligand, 489 |
FRET (fluorescence resonance energy |
GEFs (guanine nucleotide exchange |
FERM domains, 776 |
transfer), 114–117, 116, 197 |
factors), 111, 236 |
FGF (fibroblast growth factor), 432, |
Fringe, 707 |
gelsolin, 223, 224, 236 |
617, 618 |
Frizzled (Fz), 66, 590 |
gene cassettes, 711–712 |
FGFR (fibroblast growth factor |
fruit fly, 328–331 |
gene complex, 711–712 |
receptor), 617 |
FSH (follicle stimulating hormone), 22, |
gene expression |
fibrinogen, 378, 383 |
25, 249–250 |
activation, 614 |
fibroblast growth factor, see FGF |
Fura2, 193, 193 |
regulation, 422 |
fibroblast growth factor receptor, see |
furin, 489 |
repression, 614 |
FGFR |
Fus3, 344, 345 |
gene theory, 701 |
fibronectin, 395, 418, 625 |
FXR, 279, 282, 290 |
germline mutations, 668 |
Finkel–Biskis–Jinkins murine |
Fyn, 517 |
GFAP (glial fibrillary acidic protein), |
osteosarcoma virus, 578 |
FYVE, 777–778 |
629 |
first messengers, 21, 22–23 |
|
GFP (green fluorescent protein), 197, |
hormones, 25 |
G |
276 |
common aspects, 28 |
GHRH (growth hormone releasing |
|
cytokines, 26 |
G-protein-linked receptors, 354 |
hormone), 145 |
growth factors, 25 |
G protein receptor kinase (GRK2/ |
Gilman, Alfred G., 1 |
lipophilic messengers, |
ARK), 39 |
Gley, Eugene, 544–545 |
27–28 |
G protein receptor kinase family, 98 |
Glivec/Gleevec, 736, 750 |
797
Index
glucagons, 22, 62, 70 glucocorticoid, transactivation by,
288
glucocorticoid receptors, see GR GLUT4, 403, 558
glutamate, 21, 27, 55 glutamate-activated cationic
channels, 54 glycine, 27
glycogen breakdown, 132 glycogen synthase, 557, 558 glycogen synthase kinase, see GSK glycogen synthesis, 132 glycosaminoglycans, 395 glycosylation, 706–707
GM-CSF (granulocyte–monocyte colony stimulating factor), 26
GM1, 144, 145
GnRH (gonadotropin-releasing hormone), 4
gonadotropin-releasing hormone, see GnRH
GPA1, 119
GR (glucocorticoid receptor), 276, 278, 286
gram negative bacteria, 457, 458 gram positive bacteria, 457 granulocyte–monocyte colony
stimulating factor, see GM-CSF Grb2, 332, 349, 774
green fluorescent protein, see GFP groth hormone releasing hormone,
see GHRH Groucho and chromatin
condensation, 424 Groucho-related genes (Grg), 424 growth factor receptors, 324,
405–406 growth factors
cancer and transformation, 306–310
NGF and EGF discovery, 299–302 platelet-derived growth factor
(PDGF), 303–304 problems with nomenclature,
305–306
transforming growth factors (TGFs), 304–305
viruses and tumours, 298–299 growth hormone (GH), see
somatotropin
GSK (glycogen synthase kinase), 227
GSK3 (glycogen synthase kinase3beta), 426, 427, 431, 437, 438, 581, 617, 641, 680, 681
GTP, 82, 84
stable analogues, 87 GTP-binding proteins, 82, 83
activation of G proteins, without subunit unit dissociation, 111–119
-subunits, 88
determine G protein diversity, 89–92
interacting with membrane and other proteins, 92–94
-subunits, 94–97
as signalling proteins, 97
G protein receptor kinase family, 98 G proteins, 83
GTPase cycle, 84–86 switching off activity, 86–88
G proteins, receptor mechanisms obviating, 100
monomeric GTP-binding proteins, 104–108
nucleotides, as metabolic regulators, 81
GTP-binding proteins, G proteins, or GTPases, 83
Ras-GAPs, 108–111
receptor phosphorylation, downregulation and pathway switching, 98–100
regulation of adenylyl cyclase, 137, 138–140
GTPase (GTP-binding protein), 42, 83, 106, 106
activation mechanism, 110–111 GTP/GDP cycle, 84–86, 85
GTPase activating proteins, see GAPs GTPase Rac1, 500
guanine nucleotide exchange factors, see GEFs
guanylyl cyclase activating protein, see GCAP
H
Halobacterium, 55 haloperidol, 68
Harvey murine (H) virus, 101
HAT (histone acetyltransferase), 287, 422, 614
HDAC (histone deacetylation complex), 422
heat shock proteins, 282, 283 HECT type E3-ligase, 469 Hedgehog, see Hh
HEK cells (human embryonic kidney cells), 115
helper T cells, 515
hepatocyte nuclear factor 4, see HNF4 Her-2/neu, see ErbB2
Hes gene, 709, 711
Hes proteins, 711, 717, 724 Hes1, 722, 724
heterologous desensitization, 99, 100 Hetero-oligomeric complex
formation, 611–612 heterotrimeric G protein post-
translational lipid modifications, 96
heterotrimeric G proteins, 83 Hey gene, 709, 711
Hey proteins, 711, 717
Hh (Hedgehog), 431–432, 431 histamine, 22, 26, 486 histone, 287, 422
histone acetyltransferase, see HAT Hitchings, George, 739
HIV (human immunodeficiency virus), 494
HM (hydrophobic motif), 257, 259, 553
HNF4 (hepatocyte nuclear factor 4), 279
Hodgkin, Alan, 16 homodimers, 69–70, 284
homologous desensitization, 100, 100 hormones, 25
common aspects, 28 cytokines, 26 definition, 10–12 evolution and history, 2
plasma membrane barrier, 2–3 protoendocrinologists, 5–10 protohormones, 3–5
growth factors, 25
lipophilic messengers, 27–28 neurotransmitters and
neuropeptides, 27 vasoactive agents, 26–27
hox genes, 4 hSos, 332 hsp40, 282
798
Index
hsp70, 282 |
inflammatory mediators, 483, |
JAK-STAT pathway, down- |
hsp90, 282, 754 |
485–486, 485, 487 |
regulation of, 527–529, 530 |
human immunodeficiency virus, see |
inhibitory Smads, 608, 620, 621 |
interferon regulatory factors (IRFs), |
HIV |
innate immune system, 451 |
464–465 |
human papilloma virus (HPV), 530 |
IRF family, of transcription factors, |
interferonreceptor, see INF- |
human Siglec adhesion molecules, |
464–466 |
receptor |
381 |
microbial universe, sensing, |
interferons, 305, 353, 523 |
Huxley, Andrew, 16 |
452–453, 454 |
classifications, 524 |
hyaluronan, 395 |
proteasome complex, 471–477 |
receptors, 524 |
hydrophobic motif, see HM 259 |
SUMO and sumoylation, 471 |
interferon- -receptor, 523, 524, |
hydrophobicity, 51, 51 |
TLR4-induced gene transcription, |
525–526, 528–529 |
|
466–467 |
interleukin-1 receptor, see IL-1R |
I |
toll receptor in Drosophila, |
interleukin-2 receptor, see IL-2R |
453–464 |
interleukin-2, see IL-2 |
|
ICAM (intercellular adhesion |
ubiquitylation, 467–470 |
interleukin-3, see IL-3 |
molecule), 379, 489 |
iNOS, 232 |
interleukin-6, see IL-6 |
ICAM-1, 493 |
inositol-1,4,5-trisphosphate, see IP3 |
interleukin-8, see IL-8 |
ID1 (inhibitor of DNA-binding), 617 |
inositol phospholipids, signalling role |
intracellular 7TM receptor domains |
IFN- receptor-1, 524, 528–529 |
for, 147 |
and signal transmission, 73 |
IFN-stimulated response element |
inositol triphosphate, 545 |
intracellular calcium, 185 |
(ISRE), 464, 526 |
inositol trisphosphate receptors, |
Ca2 and Mg2 , distinguishing, |
IFNAR1, 524, 526, 528 |
200–202 |
188–189 |
IFNAR2, 524, 525 |
inside-out signalling, 397–398, 399 |
Ca2 microdomains and global |
IgE-R (high-affinity receptor for IgE), |
insulin, 4, 22, 23, 70 |
cellular signals, 214 |
515 |
IRS, PI3-kinase, PKB |
Ca2 signals, in electrically |
IL-1 , 455 |
in glycogen synthesis regulation, |
excitable cells, 214–215 |
IL-1R (interleukin-1 receptor), 262 |
554 |
calcium signals, in non-excitable |
IL-2R (interleukin-1 receptor), 514 |
receptor structure, 555 |
cells, 216 |
IL-2 (interleukin-2), 265, 514, 516, |
insulin receptor signalling, 543 |
calcium and evolution, 187–188 |
658 |
glycogen synthesis regulation, |
cytosol Ca2 , low level of, 190–191 |
IL-3 (interleukin-3), 529 |
554–566 |
cytosol Ca2 concentration, |
IL-6 (interleukin-6), 292, 467 |
PI 3-kinase, PI(3,4)P2 and PI(3,4,5)P3, |
mechanisms elevating, 198 |
IL-8 (interleukin-8), 452, 494, 497, 503 |
546–554 |
Ca2 by cyclic ADP-ribose and |
imatinib, 736 |
3-phosphorylated inositol |
NAADP, elevation of, 204–206 |
CML and Bcr-Abl fusion story, |
phospholipids, 566–567 |
Ca2 by sphingosine-1- |
746–749 |
through phosphoinositides, |
phosphate, elevation of, |
development, 750–752 |
545–546 |
206–208 |
molecular mechanism of inhibition |
INT3, 708 |
Ca2 influx through plasma |
by, 752 |
integrins, 383–384, 384, 386, 494, 498, |
membrane channels, 208–209 |
immunocytokines, 26 |
498 |
Ca2 release from intracellular |
immunoglobulin receptors, 207 |
and cell proliferation, 403–406 |
stores, IP 3 and ryanodine |
immunoglobulin superfamily, |
and cell survival, 400–403 |
receptors, 200–203 |
378–379, 379 |
inactive to primed, 384–386 |
replenishing depleted stores, |
immunophilin, 200, 230–231, 282, 683 |
primed to active, 387 |
209–213 |
immunoreceptor tyrosine-based |
intercellular adhesion molecule, see |
extracellular calcium and activation, |
activation motif, see ITAM |
ICAM |
191 |
IMP (impedes mitogenic signal |
interferon (IFN) receptors, signalling |
using Ca2 ionophores, to rise |
propagation), 346, 347 |
through, 523 |
Ca2 , 191 |
InaC, 265 |
alternative pathways, 526 |
free, bound, and trapped Ca2 , |
InaD, 264–265, 264 |
classification, 524 |
189–190 |
INFreceptor, 525–526 |
interferonreceptor and STAT |
intracellular Ca2 concentration, |
inflammation, 483–487 |
proteins, 525–256 |
sensing changes in, 191 |
799
Index
intracellular calcium (continued) Ca2 mobilization and Ca2
entry, 193–194 Ca2 -sensitive photoproteins,
192
fluorescent Ca2 indicators, 192–193
monitoring cytosol Ca2 in individual cells, 194–195
subcellular Ca2 changes, detecting and imaging, 195–196
targeted fluorophores and genetically encoded indicators, 196–198
second messenger, discovery of, 185–187
intracellular hormone receptors, discovery of, 274–277
intracellular messengers, 29 binding affinity, measurement of,
30–31
binding heterogeneity, 30 cAMP, 34
down-regulation of receptors, 33–34
KD and EC50, 31–32
ligands to receptors, binding, 29–30 spare receptors, 32–33
intracellular receptor evidence for, 276–277 types, 278
‘inverse’ agonists, 67
invertebrates, phototransduction in, 174–176
ion channels
nicotinic receptors, 46–49 regulation, 251
ionomycin, 191
ionotropic glutamate receptors, 55 ionotropic receptors, 45, 54, 55 IP3 (inositol-1,4,5-trisphosphate),
202–203, 517, 518, 519 IP3R isoforms, 203
IRF family, of transcription factors, 464–466
IRF3 (interferon regulatory factor-3), 629
isoprenaline, 39, 41 isopropylmethylphosphonofluoridate,
see sarin isoproterenol, see isoprenaline
ITAM (immunoreceptor tyrosinebased activation motif), 517
Itch, 713, 714 Itk, 519
J
Jagged1, 724
JAK (Janus kinases), 654–655, 659 JAK-STAT pathway, down-regulation
of, 527–530 IFN- receptor-1,
dephosphorylation of, 528–529
STAT signalling without phosphorylation, 529–530
STATs recycling and nuclear dephosphorylation, 527–528
JAK2 (Janus kinases2), 650
JAM (junctional adhesion molecule), 382, 382
differentiation regulation, 439 Janus kinases, see JAK
Janus kinases2, see JAK2
JIP (JNK-interacting protein), 581 JIP1 (JNK-interacting protein-1),
592
JNK (jun N-terminal kinase), 493 and SAPK, 349–350
JNK-interacting protein, see JIP JNK-interacting protein-1, see JIP1 JNK pathway
phosphorylation site, 582 PKC rewiring, 583
JNK1 (c-Jun N-terminal kinase-1), 592
Johns Hopkins Medical School, 11 jun N-terminal kinase, see JNK junctional adhesion molecule, see
JAM
K
kainite, 55
KD and EC50
receptor binding and functional consequences, 31–32
kinase suppressor of Ras, see KSR Kirsten sarcoma (K) virus, 101 KSR (kinase suppressor of Ras),
345–347 Kühne, Willy, 161
L
LAG-2, 703 lancelet, 4
LAP (latency-associated peptide), 629 lapatinib, 743
LAT (linker of activated T-cells), 517 LBD (ligand-binding domains),
281–282
Lck, 517, 518, 519, 658 leptin receptor, 650
leucocytes, 305, 392, 400, 483, 484 adhesion to endothelial cells,
501–502 chemokines and integrins
activation, 494–500
and inflammatory mediators, 483, 485–486
generation, 485 sources, 487
signalling via NF- B, 493
TNF proteins and receptors, family of, 489, 490
tumour necrosis factor- , 486, 488 and adhesion molecule
expression regulation, 489–492
leukaemia inhibitor factor (LIF), 616 leukaemias, 298, 298
leukotrienes, 26 Levi-Montalcini, Rita, 299–300 LFA-1 (lymphocyte function-
associated antigen-1), 377, 378 LH (luteinizing hormone), 22
LHR-1, 290
LIF (leucocyte inhibitory factor), 629 ligand binding and channel opening,
53, 54
ligand-binding domain, see LBD ligand-gated ion channels, 54–55 ligand-independent activation,
291–292 ligands, 16–17, 188
extracellular first messengers, 21 receptor interactions
binding, 31
Limnea stagnalis, 53
linker of activated T-cells, see LAT lipid rafts, 141, 522–523
lipid sensors, 278
lipophilic messengers, 27–28 lipopolysaccharide, see LPS
800