Books for lectures / Gompert Signal Transd / Index
.pdfIndex
liver kinase type 1B, see LKB1 |
MAP kinases, 352–353 |
monomeric GTP-binding proteins, |
liver X receptor, see LXR |
MAP1B (microtube-associated |
104–108 |
LKB1 (liver kinase type 1B), 564, 566 |
protein-1B), 590, 592 |
GTPases, 106, 106 |
Locke’s demonstration, 186 |
MARCKS (myristoylated alanine-rich |
mutations of Ras, promoting |
Loewi, Otto, 12, 13, 186 |
C-kinase substrate), 592 |
cancer, 106–107 |
lovastatin, 105 |
MARK2 (MAP/microtubule affinity- |
post-translational modifications, |
low-molecular-mass ligands, binding |
regulated kinase-2), 590, 592 |
105 |
of, 61–63 |
mast cells, 211 |
Ras |
LPS (lipopolysaccharide), 457, 486 |
mating factors, 113 |
functions of, 107 |
and endotoxin, 457 |
matuzumab, 743 |
subfamilies of, 101–102 |
and mucosa, 460 |
Mdm2, 402 |
Ras proteins, 101 |
acylation of, 457–458 |
MDR1 gene, 136 |
structure, 102–105 |
LSD (lysergic acid diethylamide), 14 |
MDRs (multidrug resistance |
Monosiga brevicollis, 771 |
Luchsinger, 17 |
transporters), 207 |
monostable switch, 84–86 |
luminous intensity, 168 |
me (motheaten allele), 654–655 |
monoubiquitylation, 349 |
luteinizing hormone, see LH |
mev (viable motheaten allele), 655 |
Morgan, T. H., 699–702 |
LXR (liver X receptor), 279, 290 |
mechanoreceptors, 718 |
morula, 388 |
lymphocyte function-associated |
mediastinal large B-cell lymphoma, |
motheaten allele, see me |
antigen-1, see LFA-1 |
529 |
MP-1 (MEK binding partner), 348, 360 |
lysergic acid diethylamide, see LSD |
Medullarplatte, 618 |
MR (mineralocorticoid receptors), 276 |
|
MEK (MAP kinase-ERK kinase), 334 |
MSK (mitogen and stress-activated |
M |
MEK binding partner, see MP-1 |
kinase), 339, 360 |
MEK1 (MAPK ERK activating kinase-1), |
mTOR |
|
m2, 712 |
592, 755 |
domain architecture, 562 |
M2 sequences and pore, of nicotinic |
metamorphosis, 716 |
regulation, 560 |
receptor, 52–53 |
metarhodopsin-II, see photo-excited |
multidrug resistance transporters, see |
m4, 712 |
rhodopsin |
MDRs |
Ma Huang, 4 |
Metchnikov, 452 |
multivesicular bodies, 778 |
mAb4D5, 744 |
metoprolol, 40 |
muscarine, 44, 45, 47 |
mAb225, 744 |
MH2, 610 |
muscarinic receptors, 42, 45–46, 46 |
MAC-1, 377 |
MHC (major histocompatibility |
mustard gas, 737 |
macrochaetes, 718 |
complex), 514 |
myasthenia gravis, 43 |
MAD (Mothers against |
mib, 713 |
Mycobacterium tuberculosis, 51 |
decapentaplegic), 607, 629 |
microbial universe, sensing, 452–453, |
MyD88, 455, 460 |
major histocompatibility complex, |
454 |
MyoD, 709, 724 |
see MHC |
microchaetes, 718 |
myosin II, 500 |
malignancy, 307 |
microcystins, 245 |
myosin light chain kinase, see MLCK |
m , 712 |
microdomains, 214 |
myostatin, 600 |
Mam, 709 |
middle T-antigen, 316 |
myxoedema, 9 |
mammalian estrogen, 278 |
mineralocorticoid receptors, see MR |
|
mammalian kinases, 244 |
Minkowski, Oscar, 544 |
N |
mammalian MAP kinases, 335 |
Mira (miranda protein), 436 |
|
Mangold, Otto, 618 |
mitogen and stress-activated kinase, |
N-ethylmaleimide, 72 |
MAP kinase-activated kinases (MK) |
see MSK |
N-Ras, 101 |
domain architecture, 340 |
MKK4 (MAP kinase kinase-4, 592 |
NAADP (nicotinic acid adenine |
substrates, 339 |
MKK7 (MAP kinase kinase-7), 592 |
dinucleotide phosphate), 204, |
MAP kinase phosphatase (MKP-1), |
MLCK (myosin light chain kinase), 222, |
205–206 |
664, 665 |
226, 228 |
structures, 204 |
MAP kinase phosphorylation motif, |
MNK, 341–342 |
NADPH-oxidase complex, see NOX |
337 |
molecular cloning, 39 |
NCAM (neuronal cell adhesion |
MAP kinase-related proteins, 349–351 |
molecular switches, see G proteins |
molecule), 377, 377, 378 |
MAP kinase scaffold proteins, 344–345 |
‘monkey glands’, 9 |
NEDD4, 469, 713 |
801
Index
nerve cells, 215 |
noradrenaline, 22, 23, 38 |
Notch2, 724 |
nerve growth factor, see NGF |
norepinephrine, see noradrenaline |
novel PKC isoforms, 255 |
NES (nuclear export sequence), 519 |
Notch effectors, molecular structure |
NOX (NADPH-oxidase complex), 650, |
Neur, 713 |
and domain architecture of, |
651 |
Neuregulin 1, see NRG1 |
711 |
NRG1 (Neuregulin 1), 332 |
neurites, 589 |
Notch, in Drosophila’s wings, 699 |
nrPTKs (non-receptor protein tyrosine |
neurofibromin, 111, 142 |
activation, 707 |
kinases), 513–515, 514, 532 |
neuronal calcium sensors, 233–234 |
biological functions, in humans, |
regulations, 532–535 |
neuropeptides, 24, 27 |
711–712 |
nuclear export sequence, see NES |
neurotransmitter, 12, 27 |
destruction of Notch-icd, 712 |
nuclear export signals, 611 |
compounds acting as, 24 |
effector genes, of Notch |
nuclear factor B, see NF-(B |
ergot, 14–16 |
signalling, 709–711 |
nuclear factor of activated T cells, see |
secretion, 236–237 |
transcription regulation, by |
NFAT |
neutral antagonists, 68 |
Notch intracellular domain, |
nuclear import and export, 612–613 |
NF- B (nuclear factor B), 489, 490, |
709 |
nuclear localization sequence, see NLS |
493, 518, 521 |
domain architecture, 704 |
nuclear pore proteins (NUP214), 608 |
NF1 gene, 111, 566 |
gene theory, 701 |
nuclear receptor ligands, structures |
NFAT (nuclear factor of activated T |
glycosylation of ligands and |
of, 275 |
cells), 230, 518, 519, 519, 520 |
receptor, 706–707 |
orphan receptors and evolution, |
NGF (nerve growth factor), 299–301 |
and JAK/STAT signal pathway, 726 |
278–279 |
Nicd, 709, 712, 721, 724 |
ligands, 703 |
phylogenetic tree of, 280 |
Nicot, Jacques, 44 |
Morgan, T. H., 699–702 |
nuclear receptors |
Nicotiana tabacum, 44 |
Notch phenotype, appearance of, |
activation and repression, of |
nicotine, 44, 45, 47 |
700 |
transcription, 287 |
nicotinic acetylcholine receptor, 28 |
Notch signaling pathway |
coactivators, 287–288 |
nicotinic acid adenine dinucleotide |
activation of, 708 |
corepressors, 288–289 |
phosphate, see NAADP |
components of, 705–706 |
regulatory networks, 289–290 |
nicotinic receptors, 42, 44–45, 46–49 |
Notch transcriptional complex, 710 |
transrepression, 289 |
architecture, 50 |
receptor, 703–706 |
DNA binding, 284 |
ligand binding and channel |
endocytosis of, 715 |
response elements, recognizing, |
opening, 53, 54 |
intracellular trafficking, 716 |
285–287 |
M2 sequences and pore, 52–53 |
and ligand trafficking, 712 |
domains of, 281 |
receptor desensitization, 54 |
and sensory progenitor cells of |
intracellular hormone receptors |
subunit structure, 51–52 |
Drosophila, 716 |
discovery of, 274–277 |
without ligand structure, 50 |
bristle-containing sensory organ |
and ligands |
nifedipine, 208 |
development, 720–721 |
non-transcriptional actions of, |
nitric oxide (NO) synthase, 223, |
cross-talk, 722–724 |
292 |
232–233 |
intestinal stem compartment |
nomenclature, 280, 281 |
NLS (nuclear localization sequence), |
maintenance, 722 |
receptor structure and ligand |
519 |
mechanoreceptors development, |
binding, 281 |
NMDA (N-methyl-D-aspartic acid), |
on thorax and wing, 717–719 |
cytosol-resident receptors, |
55, 209 |
notch and disease, 724–725 |
activation of, 282–284 |
N-methyl-D-aspartic acid, see NMDA |
Ras and Notch act, in vulva |
ligand-binding domains, |
nNOS, 232 |
development of C. elegans, |
281–282 |
non-autonomous receptors, 318 |
726–727 |
signalling pathways, interaction |
non-canonical signal transduction |
and TGF signal pathway, cross-talk |
with, 290 |
pathways, 438 |
between, 725 |
regulating transcription, 291 |
non-estrogenic steroids, 286 |
and Wnt pathway, cross-talk |
ligand-independent activation, |
non-receptor protein tyrosine kinases, |
between, 725 |
291–292 |
see nrPTKs |
Notch regulatory region (NRR), 707 |
phosphorylation, 290–291 |
non-viral oncogenes, 531–532 |
Notch signalling pathway, 705–706, |
steroid hormones, isolation of |
Noonan syndrome, 657 |
717 |
beginning, 274 |
802
Index
origins, 273–274 |
p27KIP, 404, 405 |
peptide O-fucosyltransferase-1, see |
superfamily, 277 |
p38, 493 |
OFUT1 |
orphan receptors and evolution, |
p38 kinase, 350 |
pertussis toxins, 143–146, 145 |
278–279 |
p38-MAP kinase, 291 |
pertuzumab, 743 |
nucleotides, as metabolic regulators, |
p47gag-crk, 325 |
Peutz–Jeghers syndrome, 564 |
81 |
p53, 309 |
Pfeiffer, Richard, 457 |
ATP, 82–83 |
p56lck, 517 |
PGE (prostaglandins), 2, 23, 26, 26, 70, |
GTP-binding proteins/G proteins/ |
p62, 262 |
143, 544 |
GTPases, 83 |
p120, 108 |
PH domains, 775 |
Numb, 720, 721 |
p120GAP, 142 |
phenylephrine, 39 |
NURR1, 279 |
p130, 744 |
pheromone-induced mating |
|
p210Bcr-Abl, 746 |
response, in yeast, 113–114, |
O |
p300/CBP, 288 |
114 |
PABA (p-aminobenzoic acid), 739 |
phorbol ester, 253, 581, 742 |
|
Obelia, 192 |
palindrome, 248 |
down-regulation by, 263–264 |
obesity, 647–650 |
p-aminobenzoic acid, see PABA |
and inflammation, 265, 266 |
occludin, 382, 383 |
PAMS (pathogen-associated |
phorbol myristate acetate (PMA/TPA), |
Raf-1-mediated cell transformation, |
molecular patterns), 453 |
structure of, 253 |
prevention of, 440 |
panitumab, 743 |
phosphatase inhibitor-1, see PP1 |
TGF I receptor, interacts with, |
Par3 (partioning defective protein-3), |
phosphatidic acid, 263 |
439–440 |
592 |
phosphatidylinositol (3,4,5) |
oestrin, 274 |
Par6 (partitioning defective protein- |
trisphosphate (PI(3,4,5)P3), 547 |
oestriol, 274 |
6), 592 |
phosphatidylinositol phosphate |
oestrogens, 4, 27, 274 |
paracrine, 25 |
kinases (PIPkins), 545 |
OFUT1 (peptide O-fucosyltransferase- |
Paramecium multimicronucleatum, 4 |
phosphatidylinositol, see PI |
1), 706, 707, 729 |
parathyroid hormone (PTH), 22 |
phosphatidylinositol-4-phosphate, |
okadaic acid, 245, 672 |
PARs (proteinase-activated receptors), |
545 |
olfaction, 176 |
65 |
phosphatidylinositol-5-phosphate, |
olfactory receptor cells, 177–178 |
partial agonists, 67, 85 |
545 |
olfactory receptors, 178–179 |
parvalbumin, 222 |
phosphodiesterases, see PDEs |
olfactory signals, transduction of, |
pathogen-associated molecular |
phosphoinositide, 545 |
179–181 |
patterns, see PAMS |
phosphoinositide 3-kinases, 543 |
oncogenes |
pathway switching |
phosphoinositide-binding domains, |
non-viral oncogenes, 531–532 |
and metastatic progression of |
774, 775 |
viral oncogenes, 530–531 |
colorectal cancer, 357 |
phosphoinositide formation and |
Orai, 211 |
by receptor phosphorylation, |
metabolism, 235 |
Orai1, 211 |
354–356 |
phospholipase A2, see PLA2 |
organotherapy, 9 |
by transactivation, 356–357 |
phospholipase C, see PLC |
orphan receptors, 278–279 |
paxillin, 387, 400 |
phospholipase D, see PLD |
outside-in signalling, from integrin |
PB1 (Phox Bem1 domain), 591 |
phospholipase family, 147 |
adhesion complexes, 398, 400 |
PC12 cells, 107 |
PLA2 and PLD, 147 |
oxytocin, 23, 28 |
pCAF, 288 |
PLC, 148 |
oxytocin receptor, 28 |
PDEs (phosphodiesterases), 141 |
phosphoinositides, 545 |
|
PDGF (platelet-derived growth factor), |
phosphorylase b kinase, 223 |
P |
25, 303–304, 305, 321, 556 |
phosphorylase kinase, 226 |
PDK1 (3-phosphoinositide-dependent |
and glycogen synthase kinase, |
|
P-glycoprotein, 136, 142 |
protein kinase-1), 593 |
227 |
P-selectin, 393, 493 |
PDP (pyruvate dehydrogenase |
phosphorylation, 99–100, 290–291 |
P-site inhibitors, 137 |
phosphatase), 622, 674 |
cadherin core complex, 433 |
p15INK4b, 613, 614 |
PDZ domains, 776 |
regulating transcription, 291 |
p21CIP1, 613, 614 |
Penicillium wortmannii, 549 |
regulation of adenylyl cyclase, |
p27KIP1, 744 |
The Pentacle of Rejuvenescence, 8 |
141–142 |
803
Index
phosphorylation and |
pIIa, 720 |
diacylglycerol kinases, 263 |
dephosphorylation |
pIIb, 720 |
phorbol ester and inflammation, |
cyclic AMP, and amplification of |
pilocarpine, 16, 17 |
265, 266 |
signals, 245–246 |
pindolol, 68 |
phorbol esters, down-regulation by, |
protein kinase A, 246–248 |
Pirenne, 160 |
263–264 |
actions of cAMP not mediated |
pirenzepine, 45 |
phosphatidic acid, 263 |
by, 251–252 |
PIX-b (PAK-interacting exchange |
PKC signalling complexes, |
and activation of ERK, 250–251 |
factor-b), 593 |
264–265 |
and regulation of transcription, |
PKA (protein kinase A), 39, 246–248, |
RACKs, 260–261 |
248–250 |
291 |
substrates interacting with PKC, in |
protein kinase C, 253 |
actions of cAMP not mediated by, |
its inactive states, 261 |
activation of, 258–266 |
251–252 |
pkc1, 255 |
family, 254–255 |
and activation of ERK, 250–251 |
pkc2, 255 |
structural domains and |
and regulation of transcription, |
pkc3, 255 |
activation of, 255–258 |
248–250 |
PLA2 (phospholipase A2), 147 |
protein phosphorylation, as |
PKB (protein kinase B), 526, 543 |
‘planar cell polarity’ (PCP) pathway, |
switch in cellular functioning, |
activation, 400, 554 |
436 |
243–245 |
through PI(3,4,5)P3, 550–554 |
plasma membrane, 2–3 |
phosphorylation |
FAK-mediated activation of, |
Ca2 influx through, 208–209 |
activation segment, 785 |
400–403 |
lipid rafts, 522–523 |
and formation of receptor |
to glycogen synthase, 557 |
plasma membrane Ca2 ATPase, see |
signalling complexes, 322 |
from insulin receptor, 554–557 |
PMCA |
phosphotyrosine, 316–317 |
PKB/Akt, 291, 526, 551, 566 |
platelet-derived growth factor, see |
photo-adaptation, 169 |
PKB , activation of, 553 |
PDGF |
photo-excited rhodopsin, 170 |
PKC (protein kinase C), 34, 223, 253, |
PLC (phospholipase C), 46, 141, 223, |
photoaffinity, 52 |
291, 577, 742 |
147–153 |
photons, 160 |
activation by Cdc42, 587 |
inositol phospholipids, signalling |
photoreceptor cells, 163–167 |
activation of, 258–266 |
role for, 147 |
cyclic GMP, 166–167 |
cell polarity regulation, 585 |
isoenzymes of, 148–150 |
dark current and signal |
in cell transformation, 577-585 |
membrane-association of, 152 |
amplification, 166 |
family of, 254–255 |
phospholipase family, 147 |
rod cells, 163–166 |
isoforms, 254 |
phospholipase C (PLC), 148 |
photoreceptors |
differential localization, 260 |
PLA2 and PLD, 147 |
mechanisms, 161 |
signalling complexes, 264–265 |
PLC , 150 |
photoreceptor cells, 163–167 |
structural domains and activation |
regulation of, 151–153 |
sensitivity of, 160–161, 162 |
of, 255 |
PLC- 1 |
phototransduction, 159 |
C1 domain, 256 |
to NF- B pathway, 521 |
in invertebrates, 174–176 |
C2 domain, 256–257 |
to NFAT, 519–520 |
phylogenetic analysis, 59 |
C3 and C4 domains, 257 |
PLC , G-protein-coupled activation of, |
physostigmine, see eserine |
pseudosubstrate ( ) and |
151–152 |
PI (phosphatidylinositol), 147, 148 |
pseudoRACK, 258 |
PLC , 150 |
PI 3-K, 566 |
turn and C-terminal motifs, |
PLC , regulation of, 152–153 |
PI(3,4,5)P3, 546 |
257–258 |
PLC , 153, 323, 325, 518 |
PI(4,5)P2, 774 |
structure of, 256 |
PLC –PKC signal transduction |
PI-3-kinase pathway, 754 |
PKC- , 581 |
pathway, 326–327 |
PI3-kinase, 353, 546 |
PKC- 1, 584 |
PLD (phospholipase D), 147 |
family, 547 |
PKC- , 584 |
pleckstrin, 775 |
multiple pathways, 552 |
PKC- , 581 |
PMA (phorbol myristate acetate), 253, |
in protein synthesis activation, 559 |
PKC- , 584 |
265, 593, 742 |
role, 549–550 |
PKC-binding proteins, 262 |
PMCA (plasma membrane Ca2 |
PIAS (protein inhibitors of activated |
atypical PKCs, proteins interacting |
ATPase), 229 |
STATs), 529 |
with, 262–263 |
polyisoprene, 754 |
804
Index
polypeptide modules binding Ca2 , |
PTPs in signal transduction, 646 |
protein phosphorylation |
224, 779 |
CD45 and immune cell function |
as switch in cellular functioning, |
polyubiquitylation, 349, 714 |
regulation, 658–660 |
243–245 |
polyunsaturated fatty acid, 26 |
diabetes, 647–650 |
protein tyrosine kinases, see PTKs |
POMC (pro-opiomelanocortin), 4, 650 |
obesity, 647–650 |
protein tyrosine phosphatases, 642, |
PP1 (phosphatase inhibitor-1), 231, |
PTP1B, 647–650 |
645, 646 |
250, 672 |
reactive oxygen species (ROS), |
cytosolic PTPs, 644–645 |
regulatory subunits of, 676–679 |
650–653 |
transmembrane receptor-like PTPs, |
in glycogen metabolism regulation, |
receptor PTPs, regulating, |
645 |
679–682 |
660–661 |
tyrosine specificity and catalytic |
PP1G, 557 |
SHP-1 and SHP-2, 653–658 |
mechanism, 645–646 |
PP2A, 346–347, 679 |
serine/threonine phosphatases, 671 |
proteinase-activated receptors, see |
PP2B, 679, 682 |
classification, 672 |
PARs |
PP5, 671, 673, 675, 679 |
dephosphorylation, of NFAT, |
proto-oncogene products, 101 |
PPAR, 278 |
683–688 |
protoendocrinologists, 5–10 |
PPM1A, 622 |
domain architecture, 673 |
protohormones, 3–5 |
structure, 623 |
PP1, in glycogen metabolism |
pseudosubstrate and pseudoRACK, |
PPP, 671, 672, 673, 675–679 |
regulation, 679–682 |
258 |
PPxY motif, 608, 617 |
PP2B, 682 |
PTB (phosphotyrosine-binding) |
PR (progesterone receptors), 276, |
PPPs, regulation of, 673–679 |
domain, 325, 327, 556, |
284, 290 |
protein domains and signal |
771–773, 772 |
practolol, 40, 41 |
transduction, 763 |
PTEN, 560, 565, 566, 668–671 |
pravastatin, 105 |
binding phosphotyrosines |
PTKs (protein tyrosine kinases) |
pregnane X receptor, see PXR |
and signalling complexes |
non-receptor, 513–515, 514 |
progesterone, 4, 23, 28, 87, 274 |
assembly, 324–325 |
receptors, 315–357 |
progesterone receptors, see PR |
evolution and shuffling, 764–765 |
PTP1B, 642, 646, 647, 647–650 |
prolactin receptors, 515 |
examples |
PTPs in signal transduction, 646 |
prontosil rubrum, 739 |
PTB domains, 771–773 |
CD45 and immune cell function |
pro-opiomelanocortin, see POMC |
SH2 domains, 768–771 |
regulation, 658–660 |
propranolol, 39, 40, 62, 68 |
functions |
diabetes, 647–650 |
prospero protein, 436 |
catalytic domains, 766 |
obesity, 647–650 |
prostaglandins, see PGE |
protein interaction domains, |
PTP1B, 647–650 |
proteasome activator (PA) subunits, |
766–767 |
reactive oxygen species (ROS), |
474 |
inventory, 767 |
650–653 |
proteasome complex, 467, 471 |
classification, 767–768 |
receptor PTPs, regulating, 660–661 |
proteasome activator (PA) subunits, |
detection, 767 |
SHP-1 and SHP-2, 653–658 |
474 |
modular structure, 763 |
puc, 666 |
20s particle, 472–473 |
sequence homology and function |
pumps, 136 |
protein A, 486–487 |
acquisition, 765 |
purine based neurotransmitters, 24 |
protein dephosphorylation and |
structural domains, 762–764 |
purine nucleotides, 81 |
protein phosphorylation, 641 |
protein inhibitors of activated STATs, |
purine pathway to chemotherapy, |
dual specificity phosphatases, 661 |
see PIAS |
739 |
DS-MKP, regulation of, 662–667 |
protein kinase A, see PKA |
PX domains, 769, 775, 777, 778 |
domain architecture, 663 |
protein kinase C, see PKC |
PXR (pregnane X receptor), 282, 290 |
in development, 665–667 |
protein kinase domains, 782–783 |
pY530, 534 |
PTEN, 668–671 |
structural elements, 783 |
pyrimidine, 81 |
protein tyrosine phosphatases, 642 |
protein kinases A, 34 |
pyruvate dehydrogenase |
cytosolic PTPs, 644–645 |
protein kinases activation, by ERKs 1 |
phosphatase, see PDP |
transmembrane receptor-like |
and 2, 337–342 |
|
PTPs, 645 |
protein kinases B/Akt |
Q |
tyrosine specificity and catalytic |
classification, 552 |
|
mechanism, 645–646 |
protein phosphatase-1G (PP1G), 557 |
Quin2, 192, 192, 193 |
805
Index
R
Rab GTPases, 715 Rab5, 714
Rab7, 714
Rab11, 715
Rac1, 263, 403, 498, 500, 590, 593 RACK1, 261, 581, 583
RACKII, 261 RACKs, 260–261 raclopride, 68
Raf-1-mediated cell transformation, prevention of, 440
raf genes, 335–337 Ran-binding domains, 776 Rap1, 251, 252, 397, 498 rapamycin, 565
RapL, 397, 498
Ras, 351–352, 498, 566, 577 functions, 107 mutations, 106–107 subfamilies, 101–102
Ras binding domain (RBD), 334, 336,
551
Ras–ERK pathway, 346, 356 activation, 403
Ras-GAPs, 108–111
Ras GEFs and GAPs, 234–236
Ras GTPase-activating-like, see RASAL Ras guanine nucleotide exchange
factor, 229–230
Ras–MAP kinase pathway, 344, 655, 657, 754
Ras-mediated growth factor, 581 Ras proteins, 101
Ras signalling pathway, 327–334 and activation of transcription,
334–335
RASAL (Ras GTPase-activating-like), 235
RasGAP (Ras GTPase activating protein), 235, 333, 649
Rb protein, 308, 309, 343–344 reactive oxygen species, see ROS receptor–ligand interaction and
receptor activation receptor dimerization, 69–70
two-state equilibrium description of, 66–69
receptor-operated channels, 209 receptor-regulated Smads, 608-610
cytoplasmic retention of, 611
receptor occupancy and cell response,
32
receptor structure and ligand binding, 281
cytosol-resident receptors, activation of, 282–284
ligand-binding domains (LBD), 281–282
receptors, 16–17, 37 acetylcholine receptors, 42–44 adrenaline, 37–38
-and -adrenergic receptors, 38 agonists, 38–39
antagonists, 39–40 receptors distinction, 40–42
cholinergic receptor subtypes, 44 architecture, of nicotinic
receptor, 50–54
ion channels, nicotinic receptors are, 46–49
ligand-gated ion channels, 54–55
muscarinic receptors, 45–46 nicotinic receptors, 44–45 containing tyrosine kinase, 318,
320, 321–323 cross-linking, 318, 321–323 desensitization, 54 dimerization, 69–70 diversity, 59–60 down-regulation, 33–34
intracellular 7TM receptor domains and signal transmission, 73
phosphorylation, 98–100 receptor–ligand interaction and
receptor activation receptor dimerization, 69–70
two-state equilibrium description of, 66–69
7TM receptor, categories of, 58 adhesion receptor subfamily,
65–66
calcium sensors and metabotropic receptors, 63–64
frizzled, 66 low-molecular-mass ligands,
binding of, 61–63 proteinase-activated receptors
(PARs), 65
receptor diversity, 59–60 7TM superfamily, of G-protein-
linked receptors, 55–58
signalling complexes assembly, 323–324
transactivation, 356–357 transmitting signals into cells,
70–73 recoverin, 223, 233
regulatory networks, 289–290 regulatory signals, 138 REL-homology domain, see RHD renin, 40
research and medical intervention, targeting transduction for, 735, 754, 756
cancer drugs testing, different approaches in, 754–757
cancer therapy, alternative targets for, 742
chemotherapy, 736, 738 antimetabolites, 737–739 combination chemotherapy,
740–741
cytotoxic antibiotics, 737 drugs, good and bad, 739–740 purine pathway to, 739
cisplatin discovery, 737
EGF receptor family of kinases, inhibitors of, 743
Bcr-Abl, mutations in, 752–754 c-Abl, inhibitor of, 750–752
CML, successful treatment of, 752 erlotinib, 745
gefitinib, 746
imatinib, 746–749, 750, 752 trastuzumab, 743–745 tyrosine kinase inhibitor
approach, 745–754
retinal
inverse agonist, 172–174 isomerization, 170 structures, 165
retinoid X receptor, see RXR RGS9, 94, 95, 173
RHD (REL-homology domain), 455,
456
Rheb, 559, 560, 566 Rho, 102, 106, 436, 499 RhoA, 397, 399
RhoA coiled-coil kinase, see ROCK
Rhodopseudomonas, 51 rhodopsin, 59, 161, 164, 165, 173
four-state model of, 172 hydropathy plots of, 56
806
Index
photo-excitation of, 170–171 |
Schäfer, Edward, 11 |
low-molecular-mass ligands, |
RhoGEF, 91 |
SCN (suprachiasmic nucleus), 54 |
binding of, 61–63 |
Riam, 397, 398, 498 |
SCP phosphatases, 622 |
proteinase-activated receptors |
RING, 469 |
Scrib (scribble homologue), 588 |
(PARs), 65 |
Ringer, Sydney, 185, 186, 253 |
scute, 717, 719, 720 |
receptor diversity, 59–60 |
RIP1, 492 |
second messenger, 34, 131, 166, 323 |
7TM receptor-linked -arrestins, 348 |
Ritossa, Ferruccio, 283 |
discovery, 185–187 |
7TM superfamily, of G-protein-linked |
RKIP (Raf-kinase inhibitory protein), |
secretin, 10, 21, 22 |
receptors, 55–58 |
348, 581, 593 |
Secundus, Gaius Plinius, 7 |
Sf9 insect cells, 67, 117 |
RNA polymerase I, 343 |
‘segment polarity genes’, 420 |
SH2 domain, 150, 153, 324, 325, 327, |
RNA polymerase II, 343 |
selectins, 392–395 |
333, 514, 529, 534, 547, 748, |
RNA polymerase III, 343 |
domain structure, 394 |
768–771, 772 |
ROCK (RhoA coiled-coil kinase), 436 |
Selye, Hans, 27 |
SH3 domain, 325, 327, 332, 514, 534, |
rod cells, 163–166, 164 |
sensory organ development, from |
547, 748, 766, 773–774 |
Rodbell, Martin, 1 |
proneural clusters, 719 |
shibire (shi), 713 |
ROS (reactive oxygen species), |
sensory organ precursor (SOP) cell, |
Shlaer, 160 |
650–653 |
718 |
SHP-1, 528, 653–658 |
Rous, Francis Peyton, 299 |
SERCAs (sarcoplasmic/endoplasmic |
SHP-2, 528, 653–658 |
RSK, 338 |
reticulum Ca2 ATPases), 190, |
sialyl Lewis, 394 |
RSV (Rous sarcoma virus), 299, 317, |
213 |
SIGLECs (sialic acid binding Ig-like |
742 |
serine esterases, inhibitors of, 43 |
lectin proteins), 380–382 |
RSVH1 (Rous sarcoma oncogene v-Src |
serine/threonine kinases, signalling |
signal transduction, 1, 2 |
product), 530 |
through receptor, 599 |
different points of view, 1 |
RXR (retinoid X receptor), 278, 278, |
accessory and pseudo receptors, |
hormones |
282 |
605-607 |
definition, 10–12 |
ryanodine, 200 |
Drosophila, Caenorhabitidis, Smad, |
evolution, and history, 2–10 |
RyRs (ryanodine receptors), 200, 201, |
downstream signalling, 607 |
meaning, 1 |
237 |
TGF family, growth factors of, 599 |
neurotransmitters, 12 |
|
serine/threonine phosphatases, 671 |
ergot, 14–16 |
S |
classification, 672–674 |
receptors and ligands, 16–17 |
dephosphorylation, of NFAT, |
signal transmission |
|
S6 protein kinases, 559 |
683–688 |
and intracellular 7TM receptor |
S6K, 338 |
domain architecture, 673 |
domains, 73 |
S6K1, 561, 562, 566 |
PP1, in glycogen metabolism |
signaling hormones, emergence of, 3 |
S17N, 107 |
regulation, 679–682 |
signalling pathways, interaction with, |
S49 cells, 88 |
PP2B, 682 |
290 |
Saccharomyces cerevisiae, 111, 113, |
PPPs, regulation of, 675–679 |
ligand-independent activation, |
344 |
serotonin, 5, 22, 26 |
291–292 |
Saccharomyces pombe, 244 |
Serrate, 703, 713 |
phosphorylation, 290–291 |
Sakmann, Bert, 48, 49 |
Serratia marcescens, 488 |
regulating transcription, 291 |
salbutamol, 39, 40 |
Serum glucocorticoid responsive |
signalling pathways, operated by |
salvarsan, 736–737 |
kinase (SGK1), 551 |
receptor protein tyrosine |
SAPK, 349–350 |
sev (sevenless), 329, 329 |
kinases, 315 |
SARA (SMAD anchor for receptor |
seven transmembrane (7TM) protein, |
beyond ERK, 337–348 |
activation), 608, 611 |
28, 45 |
branching, 325–337 |
sarcoma, 299 |
7TM receptor, 55, 58, 58 |
complications, reasons for, 348–354 |
sarcoplasmic/endoplasmic reticulum |
adhesion receptor subfamily, 65–66 |
phosphotyrosine, spotting, |
Ca2 ATPases, see SERCAs |
calcium sensors and metabotropic |
316–317 |
sarcoplasmic reticulum, see SR |
receptors, 63–64 |
switching |
sarin, 44, 54 |
classification of, 60 |
and metastatic progression of |
scaffold proteins, 344 |
ERK activation, 354–357 |
colorectal cancer, 357 |
schizophrenia, 68 |
frizzled, 66 |
and transactivation |
807
Index
signalling pathways, operated by |
Spemann, Hans, 618 |
sulphanilamide, 739 |
receptor protein tyrosine |
Spiegl, Fritz, 274 |
SUMO and sumoylation, 471 |
kinases (continued) |
Split, 709 |
superoxide, 652 |
by receptor phosphorylation, |
Spätzle, 455 |
suppressor of hair, 719 |
354–356 |
SR (sarcoplasmic reticulum), 200 |
Sutherland, Earl, 34, 131, 134 |
by transactivation, 356–357 |
Src, 406 |
SV-40, 530, 531 |
tyrosine kinase-containing |
Src family, 533 |
swaying, 420–421 |
receptors, 318–325 |
SRC-1, 288 |
SxS motif, 608, 609, 613 |
tyrosine phosphorylation, 317–318 |
St Anthony, 14 |
synaptotagmin, 223, 234, 237, 780 |
v-Src and protein tyrosine kinases, |
St Hilarion, 176 |
synthetic antagonists, 39 |
317 |
St Jerome, 176 |
|
simvastatin, 105 |
St Vitus dance, 14 |
T |
single rod cells, detecting light |
stability constant K, 188 |
|
responses in, 162 |
Staphylococcus aureus, 486 |
T cell receptor, 395, 467, 515, 516 |
6-mercaptopurine, 739 |
Starling, Ernest Henry, 10 |
T lymphocyte receptor, 514 |
skeletal muscle, 214–215 |
STAT transcription factors, direct |
signalling, 515–523 |
initiation of contraction in, 237–239 |
phosphorylation of, 353, 354 |
T lymphocytes, 205, 515, 516 |
SKIP, 709 |
STAT1, 525, 526 |
tacrolimus, 230, 683 |
SLP-76, 519 |
STAT2, 525 |
Takamine, Jokichi, 11 |
Smad phosphatases, 621-623 |
STAT3, 616 |
talin, 261, 385 |
Smad proteins, 603, 608 |
STAT5, 654–655 |
TATA binding protein, see TBP |
activation and nuclear |
STATs, 525–256, 529–530 |
TATA box, 287 |
translocation, 612 |
STE, 244 |
T RI, 605 |
as integrators of signal pathways, |
STE18, 113 |
TBP (TATA binding protein), 287 |
616–617 |
STE2, 113, 119 |
TCF (T cell factor) family, 423–424 |
linker region, 617 |
STE3, 113 |
Tcf-binding elements (TBE), 614 |
molecular structure and domain |
STE4, 113 |
telomere, 308, 309 |
architecture, 609 |
STE5, 344 |
ternary complex factor, 342 |
multiple roles in signal |
stem cell compartment maintenance, |
testis receptors (TR2 & TR4), 279 |
transduction, 608 |
434–435 |
testosterone, 4 |
with Tcf/ -catenin, 612 |
stem cells, asymmetric division of, |
TGF (transforming growth factor), 23, |
with TIF1 , 612 |
436, 437 |
304–305 |
Smad transcriptional complexes, |
steroid cortisol, 27 |
TGF 1, 439–440, 601, 603 |
613–614 |
steroid hormone receptors, 278 |
TGF , 305–306, 603, 605, 625–626, 627 |
Smad–Smad complexes, 611-612 |
steroid hormones, isolation of |
TGF -2, 601, 605 |
SMAD1/SMAD4, 621 |
beginning, 274 |
theophylline, 32, 33, 143 |
smooth muscle contraction, 239 |
origins, 273–274 |
thiovulum, 187 |
SMRT, 289 |
steroids, 3 |
3-phosphorylated inositol lipids, 401, |
SMURF1 (Smad ubiquitylation |
Stevens, Nettie, 701 |
544, 778 |
regulatory factor-1), 631 |
stilboestrol, 274 |
3-phosphorylated inositol |
SMURF2 (Smad ubiquitylation |
stim (stromal interaction molecule), |
phospholipids, 566–567 |
regulatory factor-2), 631 |
211–212 |
thrombin, 23, 65 |
Snail2, 625 |
Stolz, 12 |
thrombospondin, 625 |
SOCE, sensors activating, 211–213 |
Streptomyces, 191 |
thromboxanes, 26 |
SOCS1 (suppressors of cytokine |
Streptomyces hygroscopius, 565 |
thyroid hormone |
signalling-1), 529 |
Streptomyces lividans, 51 |
thyroid hormone, 23, 27, 274 |
SODD (silencer of DD), 489, 490 |
stromal interaction molecule, see stim |
thyroid hormone receptors, 278 |
somatomedins 1 and, 2, 23 |
Strychnos toxifera, 45 |
thyroid stimulating hormone, see TSH |
somatostatin, 23, 248 |
Sturtevant, A. H., 701 |
thyrotropin-releasing hormone, see |
somatotropin, 23 |
subcellular Ca2 changes, detecting |
TRH |
Sos protein, 330–331 |
and imaging, 195–196 |
tight junction proteins, 382 |
spare receptors, 32–33 |
substrate arginine (R201), 145 |
timolol, 68 |
808
Index
TIRAP, 460
TLR (Toll-like receptor), 453, 454 TLR4, 456, 457, 458, 459, 460, 466–467 TLR4-induced gene transcription,
466–467
TNF receptors family, 489, 490
TNF- (tumour necrosis factor- ), 486, 488, 489, 493
TNFreceptor (TNFR1), 486, 489, 490, 491, 492
TNF- (tumour necrosis factor- ), 488 Toll and IL-1 pathways, 455 Toll–dorsal pathway, 455
toll receptor in Drosophila, 453–464 Torpedo electric organ, 48
Torpedo marmorata, 50 tpa-1, 255
TPA-responsive element, see TRE TPR (three tetratricopeptide), 675 TRADD, 492
trafficking
of ligand, 713
of receptor, 713–716 and ligand, 712–713
TRAM, 464, 465 transactivation, 288, 356–357 transcription, activation and
repression of, 287 coactivators, 287–288 corepressors, 288–289 regulatory networks, 289–290 transrepression, 289
transcription regulation
by Notch intracellular domain, 709 PKA, 248–250
transducin, 164, 165–166, 172, 173,
174
transducin-like enhancer-of-split (TLE), 424
transformed cells, 306, 307–308, 624, 624, 740
transforming growth factor, see TGF transforming growth factor (TGF- ),
23
transmembrane receptor-like PTPs, 645
transmitting signals into cells, 70–73 transrepression, 289
trastuzumab, 743–744, 745
TRE (TPA-responsive element), 578
Treponema pallidum, 736
TRH (thyrotropin-releasing hormone), 25, 289
TRIF, 464, 465 trimethoprim, 739 trinitroglycerol, 232 tropomyosin, 237, 238 troponin, 237, 238
troponin C, 222, 225, 226, 238 Trp, 176, 264, 265
trp (transient receptor potential) gene, 210
TRPC7, 211 TrpL, 176, 264
TRPM2 channels, 209 TRPV channels, 210 trypsin, 65
TSC (tuberous sclerosis), 559–563 TSH (thyroid stimulating hormone),
22, 25, 289 tuberous sclerosis, see TSC tubocurarine, 44, 45
tumour necrosis factors, see TNF- ; TNF-
tumour suppression, 245
turn and C-terminal motifs, 257–258 2-phenylaminopyrimidine, 750, 751 tyrosine kinase (TK), 153, 244, 315,
513, 745
tyrosine kinase-containing receptors, 318–325, 320
tyrosine kinase family, 513–515 tyrosine phosphatase database, 643 tyrosine phosphorylation, 317–318,
323, 601, 642–647 tyrosine protein kinases
interferon (IFN) receptors, signalling through, 523–530
nrPTKs family, 513–515, 532–535 oncogenes, malignancy, and signal
transduction, 530–532 T-cell receptor signalling,
515–523
U
UBA (ubiquitin associated domain), 594
ubiquitin-binding proteins, 470 ubiquitylation, 349, 467–470, 713 Urwirbel, 618
uvomorulin, 387, 388
V
v-Fos, 578, 579 v-Jun, 578, 579
v-sis (simian sarcoma virus), 303, 304, 353
v-Src, 299, 316, 317, 530, 531, 742, 754
‘vagusstoff’, 13 vanilloid receptors, 210 vasoactive agents, 26
vasoconstrictor prostaglandin E2, 27
vasopressin, 23 Vav1, 519
VCAM-1 (vascular cell adhesion molecule-1), 378–379, 383, 489, 493
VH1 gene, 665
VH1-like phosphatases, 644 viable motheaten allele, see mev
Vibrio cholerae, 143, 144 Vicia faba, 133
viral oncogenes, 530–531 viruses and tumours, 298–299 visual purple, 161
visual transduction, regulation of adaptation, 167
calcium, acts as negative regulator, 167–170 mechanism, switching off, 171 retinal, an inverse agonist,
172–174
and olfaction, 176–181 photoreceptors
mechanisms, 161–167 sensitivity of, 160–161 phototransduction, 159
in invertebrates, 174–176 rhodopsin, photo-excitation of,
170–171 vitamin D receptor, 288
VOCCs (voltage-operated calcium channels), 208, 209, 215, 239
voltage-operated calcium channels, see VOCCs
von Recklinghausen’s neurofibromatosis, 111
Voronoff, Serge, 9
Vulval cell development in worms, 331–332
809
Index
W
WASP (Wiscott–Aldrich syndrome protein), 774
water-soluble hormones, 22–23, 25 weapons of mass destruction, see
WMDs Weber, 12
Wellcome Physiological Laboratories, 13
white blood cells, see leucocytes wingless (Wg), 420, 421, 426
WMDs (weapons of mass destruction), 44
Wnt pathway, 66, 420, 425, 426–434, 438, 616
Wnt signalling, 417, 423, 722, 723 canonical Wnt pathway, 419–424,
426–434
small intestine villous epithelium, organizing, 434–436
Wortmannin, 549, 550
X
xenografts, 744, 746 Xenopus, 97, 108, 616, 703
Xenopus laevis, 203, 213, 260, 338, 423, 600, 617, 619, 713
Xenopus oocytes, 97, 108, 648 xylometazoline, 33
Y
yeast two-hybrid assay, 324
Yersinia pestis, 245 virulence of, 457–458
Z
ZAP-70, 517, 518 zebrafish, 713, 722
zinc finger domains, 781–782 ZO (zonula occludens), 383, 418
ZONAB, 439
810