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Файл:Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_5886_Библиотеки_им_академика_М_И_Перельмана.pdf
X
- •Foreword
- •Preface
- •Acknowledgements
- •Contents
- •Contributors
- •About the Editors
- •1.2.2.3 Progeria
- •1. Bioprocessing, Bioengineering and Process Chemistry in the Biopharmaceutical Industry: Using Chemistry and Bioengineering to Improve the Performance of Biologics
- •1.1 Introduction
- •1.2.2.2 Cystic Fibrosis
- •1.3.2.1 ADC Drugs
- •1.4 Top 25 Best-Selling Drugs
- •1.5.1 An Overview
- •1.5.2 Synthetic Biology
- •1.5.8 Biopharmaceutical Regulatory CMC
- •1.5.9 Technology Transfer
- •References
- •2.1 What Is Synthetic Biology?
- •2.6 CAR-T Cell Therapies
- •2.7 Conclusion
- •References
- •3.1 Introduction
- •3.2.1 Oligonucleotide Synthesis
- •3.2.1.1 Early Synthetic Chemistries
- •3.2.2 Solid Supports
- •3.2.3 Modern Oligo Synthesis Platforms
- •3.3 Gene Synthesis
- •3.3.1 Early DNA Assembly Methods
- •3.3.2 Array-Based Gene Synthesis
- •3.4 New Discovery Bottleneck
- •3.4.1.1 Hybridoma Technology
- •3.4.1.2 Phage Display Technology
- •3.4.1.3 Synthetic Antibody Library Construction
- •Semi-Synthetic Libraries
- •Fully Synthetic Libraries
- •3.5 Perspectives
- •References
- •4.1 Introduction
- •4.2.1 Batch
- •4.2.2 Fed-Batch
- •4.2.4 Hybrid Processes
- •4.2.7 Dynamic Perfusion Processes
- •4.3.2 Glucose Limitation
- •4.4.1 N-1 Perfusion
- •4.4.3 Linked Bioreactors
- •4.5 Process Analytical Technology
- •4.6 Single-Use Bioreactors (SUBs)
- •4.7 Conclusions
- •References
- •5.1 Introduction
- •5.2.1 Molecular Format Considerations
- •5.2.1.1 The Charge-Based Electrostatic Approach
- •5.2.1.2 The Knob into Hole Approach
- •5.2.2.1 Stable CHO Host Cell Integration System—Random or Targeted?
- •5.2.2.2 Expression Vector Considerations
- •5.2.2.3 Cell Line Screening Strategy Considerations
- •5.3.1 Upstream Process Development
- •5.3.2 Downstream Process Development Considerations
- •5.3.2.1 Unique Impurity Challenges
- •5.3.2.2 Stability Concerns
- •5.5.2.1 H/H Removal
- •5.5.2.2 HMMS Removal
- •References
- •6.1 Introduction
- •6.2.1 N-Linked Glycosylation
- •6.2.2 O-Linked Glycosylation
- •6.2.3 Glycosaminoglycan Synthesis
- •6.3.1 Mannosylation
- •6.3.2 Fucosylation
- •6.3.3 Galactosylation
- •6.3.4 Sialylation
- •6.5 Glycoengineering
- •6.5.1 Manipulating Heterogeneity
- •6.5.2 Manipulating Sialylation
- •6.5.2.1 Increasing α-2,6 Sialylation
- •6.5.3 Manipulating Fucosylation
- •6.5.4 Manipulating Branching
- •6.6.1 Temperature
- •6.6.2 pH
- •6.6.3.2 Amino Acids
- •6.6.3.3 Glycosaminoglycan Production
- •6.6.4 Culture Additives
- •References
- •7.1 Introduction
- •7.1.1 AAV Gene Therapy
- •7.3.1 Humoral Immunity
- •7.3.2 Cell-Mediated Immunity
- •7.4 Conclusion
- •References
- •8.1 Introduction
- •8.2 mRNA Vaccines
- •8.2.1 Background
- •8.2.2 Production Process
- •8.2.2.2 Production
- •8.4.1 Background
- •8.4.2 Production Process
- •8.4.2.2 Production
- •8.4.2.3 Viral Inactivation
- •8.5 Protein-Based Vaccines
- •8.5.1 Background
- •8.5.2 Production Processes
- •8.5.2.1 NVX-CoV2373 (Novavax)
- •8.3 Viral Vectors
- •8.3.1 Background
- •8.3.2 Production Process
- •8.3.2.2 Production
- •8.4 Whole Inactivated Virus Vaccines
- •8.5.2.2 CoVLP (Medicago)
- •8.5.2.3 EpiVacCorona (Vector Institute)
- •8.7 Conclusions
- •References
- •9. CAR-T Bioprocessing
- •9.1 Introduction
- •9.2.1 Introduction
- •9.2.2 Lentiviral Vector Design
- •9.2.5 Upstream Bioprocessing
- •9.2.6 Downstream Bioprocessing
- •9.3 Cell Product Bioprocessing
- •9.3.1 End-to-End Systems
- •9.3.4 Activation
- •9.3.6 Cell Expansion
- •9.3.8 T-Cell Cryopreservation
- •References
- •10.1.1 What Is CRISPR?
- •10.1.4 Mechanism Behind CRISPR Gene Editing
- •10.2.1 Creating Gene Knockouts
- •10.2.2 Creating Gene Knock-Ins
- •10.2.4 CRISPR Screens
- •10.3.1 Derivative Technologies
- •10.4.2 Delivery Methods
- •10.6.2 TCR Engineered T Cell Therapy
- •10.6.3 Chimeric Antigen Receptor T Cell Therapy
- •10.9.2 Safety Considerations
- •References
- •11.1 Introduction
- •11.1.2 Categories
- •11.2 Current Status
- •11.2.1 Approved Products
- •11.2.2 Market
- •11.3 Design
- •11.3.1 Building Blocks
- •11.3.2 Linkers
- •11.3.3 Oligomerization
- •11.3.3.1 Monomer
- •11.3.3.2 Dimer
- •11.3.3.3 Trimer
- •11.3.3.4 Tetramer
- •11.3.3.5 Pentamer
- •11.3.3.6 Hexamer
- •11.3.3.7 Octamer
- •11.3.4 Orientation
- •11.3.5 Protein Engineering
- •11.3.6 Immunogenicity
- •11.4 Manufacturing
- •11.4.1 Upstream
- •11.4.2 Downstream
- •11.4.3 Glycosylation
- •11.4.4 Aggregation
- •11.4.5 Analytics
- •11.5 Therapeutic Concepts
- •11.5.1 Half-Life Extension
- •Albumin Fusions
- •Fc Fusions
- •Transferrin Fusions
- •Repetitive Peptide Fusions
- •Glycosylated Peptides
- •11.5.1.3 Aggregate Forming Peptides
- •11.5.2 Targeting Functions
- •11.5.3.1 Fc Domain Receptor-Mediated Toxicity
- •11.5.3.2 Toxins
- •11.5.3.3 Immunocytokines
- •11.5.3.4 Human Enzymes
- •11.5.3.5 Apoptosis Induction
- •11.6 Summary
- •11.7 Future Perspectives
- •References
- •12.1 Introduction
- •12.2 ADC History
- •12.3 Target Selection
- •12.4 Antibody Selection
- •12.6 ADC Technology
- •12.7 ADC Clinical Development
- •12.8.1 Mylotarg
- •12.8.2 Adcetris
- •12.8.3 Kadcyla
- •12.8.4 Besponsa
- •12.8.5 Polivy
- •12.8.6 Padcev
- •12.8.7 Enhertu
- •12.8.8 Trodelvy
- •12.8.9 Blenrep
- •12.8.10 Zynlonta
- •12.8.11 Tivdak
- •12.9 Concluding Remarks
- •References
- •13.1 Introduction
- •13.2 Gemtuzumab Ozogamicin
- •13.3 Gemtuzumab Antibody
- •13.4 Calicheamicin
- •13.7.3 Isolation of N-Acetyl Calicheamicin
- •13.10 Conclusions
- •References
- •14.1 Introduction
- •14.2.1 Antibody Generation
- •14.3.1 Structure Prediction
- •14.3.2 Biophysical Properties
- •14.3.3 Hydrophobicity
- •14.3.5 Isoelectric Point (pI)
- •References
- •15.1 Introduction
- •15.2 ADA Program Development
- •15.2.3 Project Approach
- •15.2.4 Model Library
- •15.3 Case Study
- •15.3.3 Hypothesis Generation
- •15.3.5 Feature Engineering Example
- •15.3.7 Model Insights
- •References
- •16.1 Introduction
- •16.1.1.1 United States
- •16.1.1.2 European Union
- •16.1.2 Global Markets
- •16.4.1 United States FDA
- •16.4.2 European Medicines Agency (EMA)
- •16.4.3 The World Health Organization
- •References
- •17.1 Introduction
- •17.3.1.2 Clone Selection

250
Table 9.4 Opportunities for further innovation
Challenge Potential solutions
High operation costs Adopt innovative curriculum and interdisciplinary learning
approaches to train highly skilled workforce to meet the highly
technical nature of the development and manufacturing process
[103]
Allogeneic, “off the shelf” therapies reduce the number of batches
per patient [97]
Long vein-to-vein time Decentralized manufacturing [97, 102]
Adopt manufacturing platforms to reduce cell expansion time by
increasing T-cell stemness [71, 72]
Treating solid tumors CAR NK cells, CAR macrophages, gene editing [53]
Polyclonal T-cells with enhanced stemness [73]
Improve efciency,
optimizing workows
Utilizing allogeneic or
iPSC-derived CAR-T
cells
Potential immunotoxicity Develop highly specic antigens [104]
Cold supply chains across
international borders
Automated lling and closed systems [98]
Gene editing (CRISPR, TALENs) to overcome immune rejection
[99, 100].
Develop CAR “switch-offs” including apoptosis inducers and CAR
anti-bodies [105, 106]
Innovative supply chain considerations [86]
A. Adeniran et al.
vector production, should have a positive impact in increasing affordability of
CAR-T products. Proposed strategies for optimizing production workows are outlined in Table9.5.
Use of molecular gene editing techniques like CRISPR or TALENs is an area of
growing interest in CAR-T manufacturing, particularly in the development of allogeneic therapies. Targeted gene editing allows for the precise removal of genes that
elicit an immunosuppressive response in the host. An allogeneic anti-CD19 CAR-T
generated with CRISPR from Caribou Biosciences is currently in a Phase I clinical
trial for the treatment of relapsed/refractory B-cell non-Hodgkin lymphoma
(NCT04637763) [99, 100].
Lentiviral transduction and TALENs have been combined to develop a therapy
for pediatric refractory relapsed B-cell acute lymphoblastic leukemia. The lentivirus
was used to introduce the CAR, and TALENs were used to edit the native TCR and
CD52 gene loci to generate an allogeneic product that achieved remission ahead of
stem cell transplantation in 2 infants [101].
Treatment of solid tumors remains a key challenge for CAR-T therapies.
Variations in CAR therapies, including CAR natural killer cells and CAR macrophages, are under current clinical evaluation in solid tumor indications. Genetic
engineering presents a potential solution regarding solid tumors. Genetic engineering may allow for the ne-tuning of cells to overcome the hypoxic and immunosuppressive microenvironment of solid tumors [53].

9 CAR-T Bioprocessing
Table 9.5 Strategies for optimizing production workows and quality attributes that may be
affected
Production
workow Strategies
Apheresis collection Collecting apheresis before treatment
with frontline chemotherapy or radiation
regimens
Cell selection and
expansion
Vector preparation
and transduction
Formulation Selection of formulation buffers to
Infusion Cold chain temperature excursions
Dry thaw cryopreserved apheresis
Reduction in human-derived media
components
Implement end-to-end, closed systems
from cell selection to nal formulation
Media optimization
Closed automated systems
Quality control assays
Plasmid design
Filtration and purication
increase T-cell stemness
Optimization of the cryopreservant type
and concentration
Container closure system integrity
Container lling approaches (automated
versus manual)
Thawing rate and type
Hold time and infusion rate (in-use
stability)
Quality attributes potentially
affected
Purity, viability
Purity, sterility, viability
Viability
Sterility, viability, potency
Potency, efcacy
High titer, transduction
efciency
High recovery, stability,
potency,
Potency, cell count,
transduction efciency
Cell count, viability, potency
Cell count, viability, sterility
Cell count, viability, potency,
transduction efciency,
sterility
Viability, potency,
transduction efciency
Cell count, viability, potency
Viability, potency, cell count
(dose level)
251
The model of manufacturing for CAR-T therapies requires different demands
than a traditional biopharmaceutical therapy. Because CAR-T manufacturing begins
after a patient has fallen ill, the time from apheresis to drug product administration
(“vein to vein” time) is critical to patient success. To this end, decentralized manufacturing may present a manufacturing model that is more benecial to patients than
centralized manufacturing. In decentralized manufacturing, a central hub can manage multiple, smaller manufacturing facilities located closer to the patient and
reduce the footprint of a complicated supply chain associated with centralized manufacturing [97]. Manufacturing at the point of care is another model for consideration. A collaboration between Lonza and CellPoint is exploring point of care
manufacturing with Lonza’s Cocoon system for cell expansion, reducing vein to
vein time to 5–7days [102]. As the eld continues to grow, decentralized manufacturing may be key to expanding access to patients in new geographical areas and
delivering medicines as quickly as possible.
As the CAR-T and immunotherapy eld continues to make exciting strides and
new clinical offerings, manufacturing advancements are also growing to meet

252
A. Adeniran et al.
demands for scalability, price, and patient access. In this chapter, we have discussed
current manufacturing processes for CAR-T therapies and key challenges and concerns for this growing eld. CAR-T cells hold great promise as a curative therapy,
and as the knowledge of the therapy and eld grows, research scientists, manufacturers, and clinical partners can continue to push the bounds of immunotherapy to
offer more options for patients.
Acknowledgments The authors thank Dr. Alexandra McGregor for helpful discussions around
potency assays.
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257


Chapter 10
CRISPR Technology andIts Application
inTherapeutics
RigelKishton, MontseMorell, KevinHolden, MeenakshiPrabhune,
RebeccaRoberts, BobbyMoon, andRebeccaL.Nugent
Abstract Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)
technology is one of the most signicant scientic breakthroughs of this century,
revolutionizing therapeutics. A component of bacterial immune systems, CRISPR
has been repurposed to precisely edit DNA sequences. The accuracy, efciency, and
simplicity of CRISPR technology have provided exciting new avenues to modify
DNA and RNA for the treatment of human diseases. This includes both gene therapy, in which genes are edited invivo in patients, and gene-edited cell therapy, in
which cells are edited exvivo and transfused into patients. This chapter is a comprehensive guide to CRISPR gene editing and its applications in biotherapeutics. It
begins with an introduction to CRISPR-Cas9 technology, examining its discovery
and adaptation, mode of action, advantages over previous tools, derivatives of the
original CRISPR-Cas9 technology, and gene editing methods. This is followed by a
review of the applications of CRISPR technology in biotherapeutics, including both
gene therapies and gene-edited cell therapies for the treatment of three disease categories: genetic disorders, infectious diseases, and cancer. Relevant preclinical
research and/or clinical trials are discussed for each disease category. The nal
R. Kishton
Moonwalk Biosciences, South San Francisco, CA, USA
e-mail: rigel.kishton@moonwalk.bio
M. Morell
EditCo Bio, Redwood City, CA, USA
e-mail: montse.morell@editco.bio
K. Holden · R. Roberts · B. Moon
Synthego Corporation, Redwood City, CA, USA
M. Prabhune
The Scientist, Lab X Media Group, Midland , ON, Canada
e-mail: mprabhune@the-scientist.com
R. L. Nugent (*)
Tessera Therapeutics, Sommerville, MA, USA
e-mail: rnugent@tesseratx.com
K. Gadamasetti, S. A. Kolodziej (eds.), Bioprocessing, Bioengineering
and Process Chemistry in the Biopharmaceutical Industry,
https://doi.org/10.1007/978-3-031-62007-2_10
259© The Author(s), under exclusive license to Springer Nature Switzerland AG 2024
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