Добавил:
Upload
Опубликованный материал нарушает ваши авторские права? Сообщите нам.
Вуз:
Предмет:
Файл:Bioinformatics_lectures / lecture4.pptx
X
- •SEQUENCE ALIGNMENT
- •Sequence alignment produced with the freely available program ClustalW between two zinc finger
- •WHY DO SIMILARITY SEARCH?
- •WARNING: SIMILARITY NOT
- •BLAST
- •EXAMPLE BLAST QUESTIONS
- •IDENTIFYING SIMILARITY
- •NEEDLEMANWUNSCH
- •NEEDLEMANWUNSCH DETAILS
- •NEEDLEMANWUNSCH
- •ALGORITHM
- •SMITH–WATERMAN ALGORITHM
- •SMITHWATERMAN
- •GLOBAL VS. LOCAL
- •COMPLEXITY
- •OTHER OBSERVATIONS
- •BLAST
- •BLAST is one of the most widely used bioinformatics programs, because it addresses
- •EXAMPLES
- •PROGRAM
- •OUTPUT
- •HOW IT WORKS?
- •BLASTP ALGORITHM (A PROTEIN TO
- •List all of the HSPs in the database whose score is high enough
- •EXTENSIONS
- •EXTENSIONS
- •USES OF BLAST
- •VIDEO LINKS
- •VIDEO LINKS
- •TUTORIALS
VIDEO LINKS
http://www.youtube.com/watch?v=gKRDe7l42M
http:// www.youtube.com/watch?v=ZuBMBJmfn4&featu re=related
http:// www.youtube.com/watch?v=go2ZxriVdfg&feature =relmfu
VIDEO LINKS
http:// www.youtube.com/watch?v=IVRSFaGCGeE
http://www.youtube.com/watch?v=cxBAuKr0beU
TUTORIALS
http:// www.bio.davidson.edu/COurses/genomics/2008/Si mpson/Tutorial.html
http:// www.life.umd.edu/labs/delwiche/bsci348s/prac/Bl astIntro.html
Соседние файлы в папке Bioinformatics_lectures