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Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_2617_Библиотеки_им_академика_М_И_Перельмана

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M. Vidali
Pre-analytical conditions, particularly subject prepara­tion, sample collection, processing, and transport, must be identied and carefully controlled to minimize their effect on the validity of results by introducing bias or increasing variability.
Analytical aspects shall also be carefully considered and described, including the method and instrumentation used, the analytical performance and, where possible, demonstra­tion of “traceability” of the method used to higher metrologi­cal levels. In particular, this last aspect is crucial to enable the transfer of reference intervals between different laboratories.
In the denition of reference intervals, statistical methods are used to identify aberrant data, to stratify or partition ref­erence individuals into homogeneous groups, and to calcu­late the limits of the reference interval and the associated condence limits. Aberrant results can signicantly affect the calculation of reference intervals. For their identication, and eventual elimination, it is necessary to observe the distri­bution of the collected data, to verify that the presence of apparently extreme data does not depend on pre-analytical, analytical, or gross errors and to apply appropriate statistical methods. The techniques used are the same as those described above. Several approaches have been described in the litera­ture to assess the need to stratify or partition the reference population into homogeneous groups, including hierarchical ANOVA (or nested ANOVA), Sinton’s method, Harrys and Boyd’s method, and Lahti’s method. According to the latter approach, we rst calculate the limits that include 95% of all results (common distribution without subgroups) and then evaluate the number of observations in the subgroup distri­butions that fall outside these limits, that is, those that have values less than the lower limit or greater than the upper limit. Denoting with p the highest percentage of observations that in the distributions of the subgroups fall outside the lim­its (or in the right or left tail), if p>4.1% it is necessary to stratify, if <3.2% it is not necessary to stratify. For intermedi­ate percentages, it is necessary to decide on the basis of non­statistical criteria. Also for the calculation of the reference limits and the relative condence intervals, there are numer­ous methods in the literature, including the non-parametric method and the robust method of Horn and Pesce. With the non-parametric method, traditionally preferred by the IFCC, the reference interval corresponds to the central portion of the reference distribution comprising 95% of the values, delimited by the quantiles 0.025 and 0.975. Their calculation requires at least 1/0.025=40 data. With such size (n=40), the limits of the interval correspond to the values of the rst and last observation, but it is not possible to estimate the relative condence intervals and therefore the uncertainty. For 90% condence intervals, a minimum number of 120
individuals is required: in this situation, the limits of the ref­erence interval correspond to observations 3 and 118 and the respective condence intervals to observations 1 and 7 and 114 and 120, respectively. For larger numbers, it is necessary to use tabulated values available in literature or statistical software. The main advantages of this method are the sim­plicity of calculation and the robustness; however, the high numerosity (even more if one considers that n=120 is the minimum numerosity for each possible subgroup) often lim­its its applicability, in particular in small laboratories. In the robust method of Horn and Pesce, which can be used in sam­ples of lower numerosity, the reference limits are estimated by iteratively applying robust indicators, after Box-Cox nor­malizing transformation. In the case of reference intervals determined by the robust method, the relative condence intervals must be calculated by the bootstrap method, a sta­tistical technique of sampling with re-entry; in short, from the sample of n reference individuals, N samples with replacement are extracted and of each one, by the Horn and Fish robust method, the two reference limits are calculated. Of the N estimates of the lower limit and N estimates of the upper limit of the reference interval, the percentiles 5 and 95 are calculated, which will constitute the limits of the two 90% condence intervals of the reference interval.
An alternative to the fresh determination of reference intervals is the transfer of existing reference intervals. If the laboratory has already determined its own reference interval, and needs to change the analytical method, the new reference interval can be calculated from the previous one using its own samples and the equation of the regression model obtained by comparing the method currently in use with the new method (provided that the two methods have similar analytical performance). Alternatively, the laboratory, after verication, may implement a reference interval determined by a third party, provided that the pre-analytical and analyti­cal conditions (method traceable to the same reference system) used to determine the interval are well documented and comparable with those of the laboratory and the two populations are similar. To verify the range, the laboratory selects 20 normal individuals (with characteristics that over­lap with those of the reference population of the laboratory that determined the range), eliminates extreme values (by testing for aberrant values) and, if necessary, analyzes new samples until 20 results are obtained, and veries how many results are outside the considered reference range: if 2 or less values fall outside the interval, it can be implemented; if 3 or 4, the verication experiment is redone; and if still more than 2 values fall outside the interval or if 5 or more in the rst experiment, then the interval cannot be implemented and any pre-analytical or analytical differences or between the two populations must be checked.
I
AI
G
22
II
G
+
==
4 The Role ofStatistics inLaboratory Medicine
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39
Individuality Index
A problem with using reference intervals to interpret labora­tory data is that of so-called individuality, that is, for some analytes the values of each individual occupy, or extend, only a small portion of the interval. In other words, the intra­individual biological variability (CVI) is much smaller than the interindividual one (CVG). This concept is well expressed
by the individuality index:
I =
CVA<CVI, can be simplied to
+CV CV
CV
CV
= . A low individual-
CV
, which when
I
ity index (II<0.6) means that the analyte has a marked indi­viduality, while a high individuality index (II>1.4) indicates an analyte with little individuality. In the rst case, reference values are not very useful and it is preferable to compare the current results with the previous results of the same subject, while in the second case, when the values of the individual extend to the whole range, the comparison with a reference range is preferable. The individuality index can be increased by stratication or partition, thus dening different reference intervals for different subgroups.
Decision Levels
Reference intervals are quite different from decision levels or limits. In fact, while the former are determined in appar­ently healthy subjects using statistical methods, and there­fore the comparison with the result presented by the patient can at least suggest whether the latter is probably healthy or unhealthy, the latter are determined by expert consensus and serve to identify a risk threshold, a classication threshold for a given pathology or a threshold for a clinical decision or treatment.
Performance ofaDiagnostic Test
Table 4.1 Contingency table
Gold standard Total
Sick Healthy
Tests under examination
Total Total sick
Pos True
positives (TP)
Neg False
negatives (FN)
people
False positives (FP)
True negatives (TN)
TotalHealthy
Total positives
Total negarives
tion. Hence, the attribution, on the basis of an analytical test, of an individual to a group or to another can be expressed only in probabilistic terms and the performance of the test in correctly classifying a subject is given by some indices such as clinical sensitivity, clinical specic­ity, positive predictive value, and negative predictive value, calculated by comparing in the so-called 2×2 con­tingency table the test whose performance is to be evalu­ated with a test of certain reliability (gold standard) (Table4.1).
Clinical sensitivity (Se) is the probability of a test to give a positive result if the subject is sick [Se=P(pos | sick)] and answers the question “how many sick individuals tested pos­itive?” Sensitivity can also be understood as the proportion of sick individuals who test positive. In other words, the sen­sitivity of a test is its ability to correctly identify sick indi-
TP
e
viduals. Thus,
==
sickTPTP FN
.
Clinical specicity (Sp) is the probability of a test to give a negative result if the subject is healthy [Sp = P(neg | healthy)] and answers the question “how many healthy sub­jects tested negative?” Specicity can also be understood as the proportion of healthy individuals who test negative. In other words, the specicity of a test is its ability to correctly
TN
identify healthy individuals. Thus,
healthyTNTN FP
.
+
Sometimes the clinician nds himself in the situation in which it is necessary to classify an individual on the basis of an analytical result expressed by a continuous quantita­tive variable. The simplest classication is represented by a dichotomous qualitative variable that can assume only two values: positive or negative, sick or healthy, or high or low risk. In order to classify individuals into two sub­groups, the clinician uses a threshold value (cut-off). However, the choice of this cut-off value is not always easy as often the distribution of results of the healthy pop­ulation is partly overlapped with that of the sick popula-
From the observation of the two ratios, it is clear that the sensitivity is greater the lower the number of false negatives; equally the specicity is greater the lower the number of false positives. This means that a test with high sensitivity will rarely fail to identify sick patients and can therefore be useful to exclude a diagnosis (rule out); vice versa, a test with high specicity will rarely classify a healthy individual as sick and can therefore be useful to conrm a diagnosis (rule in).
Since sensitivity and specicity are calculated on a sam­ple, the respective condence intervals must also be associ-
40
CI
()
CI
()
==
==
()
.,
PPV
NP
×
−−
[]
()()11
[]
()
11
LR
()
()
P
|1
LR
()
()
P
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M. Vidali
ated with the two statistics. For 95% condence, the
Se Se
95 196
respective intervals are
95 196
%.
.
PPV PPV
sitivity and
In real situations, where the distributions of healthy and sick populations are partially overlapping, as the selected threshold value varies, an increase in sensitivity of a test is associated with a decrease in specicity and vice versa. The preference for one or the other index depends on the particu­lar situation: a high sensitivity test is preferable for rare pathologies, when the missed diagnosis may have serious consequences (fatal but potentially curable pathologies) or to exclude a diagnosis (rule out); a high specicity test is pref­erable for high prevalence pathologies in order to avoid waste of resources, and in situations where a false positive diagnosis may have serious consequences on the subject (economic, psychological, invasiveness of further tests).
Not all individuals who test positive or negative are sick or healthy, respectively. To answer this question, two other calculated indices are useful: the positive predictive value (PPV) and the negative predictive value (NPV).
The positive predictive value is the probability that an individual testing positive is ill [PPV= P(sick | pos)] and indicates the proportion of test-positive individuals who are
ill. It is calculated as PPV
The negative predictive value is the probability that a test­negative individual is healthy [NPV=P(healthy | negative)] and indicates the proportion of test-negative individuals who
are healthy. It is calculated as NPV
Note that if PPV is the probability that a test-positive indi­vidual is ill, then 1-PPV is the probability that a test-positive individual is healthy. Equally, if NPV is the probability that a test-negative individual is healthy, then 1-NPV is the prob­ability that a test-negative individual is sick.
Condence intervals can also be calculated for the posi­tive and negative predictive value:
CI %
95 196
CI %
95 196
One must pay close attention that the PPV and the NPV depend closely on the prevalence of the disease. This depen­dence is easily understood by applying Bayes’ theorem:
%.
Sp Sp
1
healthy
TP
positivesTPTP FP
1
positives
PPV NPV
N
negativ
for the PPV while
1
()
1
for sen-
sick
for specicity.
.
+
TN
negativesTNTN FN
for theNPV
+
.
.
=
prevalence Se prevalence Sp
()
V
==
()
prevalence Sp prevalence Se
Thus, under conditions of low prevalence and specicity of a test, the positive predictive value drastically decreases and the negative predictive value increases.
From the formula of the PPV, it is also understood that, as the specificity tends to 0 (and therefore the sensi­tivity to 1), the PPV tends to the prevalence of the disease.
One approach to increasing PPV is obviously to operate in high prevalence situations, such as applying the test to high-risk subgroups.
Another index aimed at assessing the performance of a diagnostic test is the likelihood ratio (LR). The positive like­lihood ratio (LR+) indicates how many times a positive test is more likely in a sick individual than in a healthy one, that is, the ratio of the probability of having a positive result among those with the disease divided by the probability of having a positive result among those without the disease:
+
lihood ratio (LR−) indicates how many times a negative test is more likely in a sick individual than in a healthy one, that is, the ratio of the probability of having a negative result among those with the disease divided by the probability of having a positive result among those without the disease:
if LR>1 the test supports the presence of the disease (par­ticularly if LR>10 the test is very effective in conrming), if LR<1 the test excludes the presence of the disease (par­ticularly if LR<0.1 the test is very effective in excluding), if LR=1 the usefulness of the test in the diagnostic process is null. Likelihood ratios are very useful to the clinician to understand how much the probability of a diagnosis hypoth­esized before the test increases in case of a positive or nega­tive result. In other words, from the “a priori” or “pre-test” probability of a certain diagnosis (probability deduced from the literature for the general population, from the symptoms and signs presented by the subject or in any case from the available information), we pass to the “a posteriori” or “post- test” probability, that is, the probability of having a certain pathology after having obtained the results of a test. The calculation is much simplied if the odds are used instead of the pre- and post-test probabilities. In fact, in the case of odds, the effect of the likelihood ratio is multiplicative.
−+−
pos sick
=
P
=
P
|
pos healthy
negsick
|
neghealthy
|
prevalence Se
×+
()
1
prevalence Sp
Se
=
=
. Similarly, the negative like-
Sp
Se
1
. For interpretation purposes,
Sp
odds
pretest
odds
p
posttest
1-Specificity
Sensitivity
1.0
4 The Role ofStatistics inLaboratory Medicine
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For this purpose, rst we transform the pre-test probabil-
41
prob
pretest
ity into odds,
pretest
=
1
prob
(when the pre-test
probability is equal to the prevalence of the pathology in the population or in that particular subgroup or class of individu-
als we will have
odds are calculated odds
pretest
posttest
prevalence
=
1
prevalence
=LR×odds
), the post-test
and, apply-
pretest
ing the inverse formula, the post-test probability is calculated
odds
posttest
rob
posttest
=
+1
odds
. Alternatively, particularly in the
clinical setting, it is possible to use Fagan’s nomogram. The main advantages of using the likelihood ratio are represented by the fact that it is an easily understandable tool and that it can be used according to a sequential approach (the post-test probability of a given diagnostic test can be used as a pre-test probability for the next one). However, its use is limited in all those situations where a pre-test probability is not available.
ROC Curves
ROC (Receiver Operating Characteristic) curves are an important statistical tool to study the diagnostic performance of a test; in particular, they allow to evaluate how sensitivity and specicity change when the cut-off selected for a con­tinuous quantitative result is changed.
In short, given a test with results described by a quantita­tive variable, various cut-offs are selected and for each of them the sensitivity and specicity of the test are calculated; in a Cartesian diagram, the curve given by the union of the points with the abscissa 1-specicity, that is, the proportion of false positives, and the ordinate sensitivity, that is, the pro­portion of true positives, is then drawn (Fig.4.9). The slope of the line joining the origin of the axes with every single point of the ROC curve, that is, with every selected cut-off, is equal to the likelihood ratio at that point, that is, for that cut­off. The diagnostic power of the test, that is, its ability to correctly classify sick and healthy people, is expressed by the area under the ROC curve or AUC (Area Under the Curve) and is proportional to it. For AUC=1, the test dis­criminates perfectly sick and healthy while for AUC =0.5 the test is not informative. For intermediate values, between
0.5 and 1, the test will show poor, moderate, or high accu­racy. The condence interval for AUC can be calculated by different methods, including that of Hanley & McNeil, DeLong, or the bootstrap method, which are generally avail­able in major statistical software. ROC curves, and their respective AUCs, can also be used to compare two or more different diagnostic tests in the same graph.
0.8
0.6
0.4
0.2
0.08
0.0 0.2 0.4 0.6 0.8 1.0
Fig. 4.9 ROC curve
Recommended Readings
Baadenhuijsen H, Smit JC (1985) Indirect estimation of clinical chemi-
cal reference intervals from total hospital patient data: application of a modied Bhattacharya procedure. J Clin Chem Clin Biochem 23:829–839
Bland JM, Altman DG (1999) Measuring agreement in method com-
parison studies. Stat Methods Med Res 8:135–160
Bock BJ, Dolan CT, Miller GC etal (2003) The data warehouse as
a foundation for population-based reference intervals. Am J Clin Pathol 120:662–670
Box G, Cox D (1964) An analysis of transformations. J Royal Stat Soc
B26:211–252
Ceriotti F (2007) Gli intervalli di riferimento nel nuovo millennio.
Biochim Clin 31:254–266
Ceriotti F, Infusino I, Panteghini M (2012) Teoria e pratica degli inter-
valli di riferimento riferibili. Biochim Clin 36:171–176. Clinical and Laboratory Standards Institute. Dening, Establishing, and Verifying Reference Intervals in the Clinical Laboratory; Approved Guideline-Third Edition. CLSI document EP28-A3c. 2010
Clinical and Laboratory Standards Institute (2003) Evaluation of the
linearity of quantitative measurement procedures: a statistical approach; Approved guideline. CLSI document EP06-A
Clinical and Laboratory Standards Institute (2005) User verication
of performance for precision and trueness; Approved guideline­Second Edition. CLSI document EP15-A2
Clinical and Laboratory Standards Institute (2012) Evaluation of detec-
tion capability for clinical laboratory measurement procedures; Approved guideline-Second Edition. CLSI document EP17-A2
Clinical and Laboratory Standards Institute (2013) Measurement
procedure comparison and bias estimation using patient samples; Approved guideline-Third Edition. CLSI document EP09-A3
Clinical and Laboratory Standards Institute (2014a) Evaluation of preci-
sion of quantitative measurement procedures; Approved guideline­Third Edition. CLSI document EP05-A3
Clinical and Laboratory Standards Institute (2014b) User verication of
precision and estimation of bias; Approved guideline-Third Edition. CLSI document EP15-A3
Efron B (1982) The Jackknife, the bootstrap and other resampling
plans. Society for Industrial and Applied Mathematics, Philadelphia
Ferre-Masferrer M, Fuentes-Arderiu X, Puchal-Ane R (1999) Indirect
reference limits estimated from patients’ results by three mathemat­ical procedures. Clin Chim Acta 279:97–105
Harris EK, Boyd JC (1990) On dividing reference data into subgroups
to produce separate reference ranges. Clin Chem 36:265–270
Hoffman RG (1963) Statistics in the practice of medicine. JAMA
185:864–873
42
https://t.me/medicina_free
M. Vidali
Horn PS, Pesce AJ (2005) Reference intervals. A user’s guide. AACC
Press, Washington, DC Horn PS, Feng L, Li Y et al (2001) Effect of outliers and non-
healthy individuals on reference interval estimation. Clin Chem
47:2137–2145 Huber P (1981) Robust statistics. Ed. John Wiley, NewYork Ichihara K, Boyd JC (2010) An appraisal of statistical procedures
used in derivation of reference intervals. Clin Chem Lab Med
48:1537–1551 Kouri T, Kairisto V, Virtanen A etal (1994) Reference intervals devel-
oped from data for hospitalized patients: computerized method
based on combination of laboratory and diagnostic data. Clin Chem
40:2209–2215 Lahti A (2004) Partitioning biochemical reference data into sub-
groups: comparison of existing methods. Clin Chem Lab Med
42:725–733 Lahti A, Petersen PH, Boyd JC etal (2004) Partitioning of nongaussian-
distributed biochemical reference data into subgroups. Clin Chem
50:891–900
Leys C, Ley C, Kleina O etal (2013) Detecting outliers: do not use
standard deviation around the mean, use absolute deviation around the median. J Exp Soc Psychol 49:764–766
Passing H, Bablok W (1983) A new biometrical procedure for testing
the quality of measurements from two different analytical methods. Application of linear regression procedures for method compari­son studies in clinical chemistry, Part I.J Clin Chem Clin Biochem 21:709–720
Petersen PH, Stockl D, Blaabjerg O et al (1997) Graphical inter-
pretation of analytical data from comparison of a eld method with a Reference Method by use of difference plots. Clin Chem 43:2039–2046
Sinton TJ, Crowley D, Bryant SJ (1986) Reference values for calcium,
phosphate, and alkaline phosphatase as derived on the basis of multichannel- analyzer proles. Clin Chem 32:76–79
Vidali M, Tronchin M, Dittadi R (2016) Protocollo per la comparazione
di due metodi analitici di laboratorio. Biochim Clin 40(2):129–142
Westgard JO (1995) A method evaluation decision chart (MEDxchart)
for judging method performance. Clin Lab Sci 8:277–283
Elements ofMetrology
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OrazioRuzzenente andClaudioBrentegani
5
Introduction
Omnia in mensura et in numero et in pondere disposuisti (You
have arranged everything by measure, number, and weight) (St.
Augustine).
Measurement is the highest degree of knowledge of a thing or phenomenon.
Only the measurement of a “thing” or phenomenon allows us to know it in depth and make qualied decisions about it. Metrology is the science of measuring processes and is par­ticularly important for laboratory professionals.
We provide below some denitions regarding metrology taken from “International Vocabulary of Metrology– Basic and GeneralConcepts and Associated Terms”:
• Measurement: a process to quantitavely describe the
property (magnitude) of a thing or phenomenon
• Measure: the result of a measurement consisting of a set
of three data elements (numerical value, unit of measure,
measurement uncertainty)
• Magnitude: an attribute of a thing or phenomenon that can
be expressed qualitatively or quantitatively
• Measurand: quantity intended to be measured
• Measurement unit: real scalar individual quantity, dened
and adopted by convention, with which any other quan-
tityof the same kind canbe compared to express the ratio
of the two quantities as a number
• Measurement uncertainty: a parameter characterizing the
dispersion of the values being attributed to a measurand,
based on the information used
O. Ruzzenente Section of Clinical Biochemistry, University of Verona, Verona, Italy
C. Brentegani ( Section of Clinical Biochemistry, Department of Neurological, Biomedical and Movement Sciences, University Hospital of Verona, Verona, Italy e-mail: claudio.brentegani@univr.it
*)
The measurement process is characteristically carried out in successive steps. The rst step is to identify the measurand and dene its state during the measurement process since the latter can affect the characteristics of the measurand itself. The next step is to establish the reason for the measurement (appropriateness of the request) because its knowledge can inuence the measurement procedure (choice of the mea­surement method or instrument) and the choice of acceptable limits of imprecision for that measurement.
Another step is to assess the suitability of the sample to be analyzed. The denition of a sample in biochemistry is dif­ferent from that in metrology. In metrology, a sample is a medium that reproduces a known value of a quantity for use as a comparison. In biochemistry, a sample can be under­stood as a piece of material representing the whole. In this context, there is a fundamental part of clinical biochemistry that studies pre-analytical procedures that can also heavily inuence the representativeness of the sample. In order to provide reliable measurements, it is fundamental to evaluate the representativeness of the material being measured, par­ticularly in this historical moment, because completely auto­matic instruments carry out a large part of the analyses (measurements). Interferences due to incorrect preanalytical procedures or the presence of interfering substances cause a systematic, and often clinically signicant, error in the deter­mination of the concentration of an analyte.
Metrology inLaboratory
The choice of measurement method and instrumentation is the next step. Measurement methods can be direct or indi­rect. In biochemistry, the two direct methods still used are potentiometry, which measures the potential difference due to electrical charges carried by ions in solution (ions selec­tive electrodes, blood gas analysis), and the lowering of the cryogenic point, which measures the osmolality of a sample. The direct methods usually allow for obtaining comparable results and are characterized by low measurement
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43
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O. Ruzzenente and C. Brentegani
uncertainties. All other methods are indirect and often involve several steps to obtain the signal to be measured. It is, therefore, essential to know exactly the relationships among the products obtained in the various steps of the reac­tions during measuring procedures. Each step has a certain degree of uncertainty, and it is, therefore, important when studying a method to calculate the total inaccuracy by adding up the inaccuracies of the various steps. These methods are the most common way to determine the concentration of a substance. This quantity is not directly measurable but requires specic reagents to form with the substance under examination known products with a signal measurable by laboratory instruments.
The choice of instrumentation to perform a measurement must be weighted according to the measuring principle, and all the mechanical activities of the instrument must have a negligible inuence (better not inuence at all) on the result of the measurement. Once the signal has been detected, it must be transformed into a measurement by a logical or prac­tical process known as calibration. The calibration of an instrument is a mechanical operation that prepares the instru­ment to provide measurement of a certain quantity equal to those of the reference material. Calibration, on the other hand, is a logical–practical operation that establishes the signal-to­size ratio by comparing, using indirect methods, known val­ues of the same quantity of one or more reference materials.
In some cases, the association between signal and magni­tude is established by chemical or physical relationships (e.g., Lambert–Beer law in spectrophotometry). However,the direct application is impossible because, in a routine labora­tory, the measurement conditions cannot be perfectly con­trolled. The relationship is therefore obtained experimentally by constructing calibration lines or curves. It is preferable, during calibration, to use several reference samples and con­struct a calibration curve or straight line to minimize the inaccuracies related to the measurement of every single point of the curve. The choice of reference samples for the con­struction of the calibration curve shall consider the matrix effect. The samples must therefore be as similar as possible to those under analysis because all the substances present may inuence the measurement even if they are not consid­ered true interferents. Once all the steps described have been implemented, the expression of the measurement result is achieved. Three pieces of information should always be pro­vided when communicating the results of a measurement: the numerical value, the unit of measurement, and the uncer­tainty of the measurement.
The unit of measure chosen to provide the result and the correct choice of the number of signicant digits of the
numerical value help to dene the quality of a measurement. In recent years, there has been an innovative process whereby the focus of analysis is no longer the actual value of the mea­surand, but rather the quality of the measurement. The term measurement uncertainty is more appropriate than the term error and well describes the indeterminacy of any experi­mental result.
The evaluation of the measurement uncertainty is statisti­cal and is therefore based on a calculation procedure codied in an international standard (UNI CEI ENV 13005, July
2007).
An indispensable prerequisite for considering a mea­surement as qualied information is the traceability of the measurements, that is, the existence of a chain of compari­sons that enables each result obtained to be linked to inter­nationally recognized reference standards. In this case, an increase in uncertainty can be generated in the passages between one comparison and another, which must be accu­rately quantied.
To resume and widen the discussion, it is necessary to premise that it is quite easy in biochemistry to identify the measurand because it is almost always the concentration of a substance or analyte, even if sometimes it is not so easy to identify exactly (or completely) the substance itself whose concentration is to be measured. Furthermore, a straight line corresponding to the Lambert–Beer law often represents the marker-concentration relationship. Although it is difcult to apply the law directly in a routine laboratory, it is relatively easy to identify this relationship and the linearity limit, which also represents the concentration limit beyond which the relationship is no longer predictable. Even in the case of reactions involving enzymes, although the latter present some problems characteristic of enzymatic reactions (iso­forms), they are oxidation–reduction reactions and therefore relatively easy to predict. For a more detailed discussion of this aspect, please refer to the chapter on enzymes. All the activities described above can therefore be summarized in the standardization of a method.
Standardization inLaboratory
The denition of standardization encompasses a set of spe­cic rules that are the basis of guidelines aimed at achieving an optimal degree of uniformity in each discipline. The prod­uct of standardization must ensure the highest possible com­parability in the standardization of measures, consistency, and quality in the various aspects of procedures, thus guaran­teeing the producer and the consumer. Translating the deni-
5 Elements ofMetrology
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tion into good laboratory practice, the product of standardization is a good test with optimal results that con­tributes to quality diagnostics, followed by better patient care and improved public health. Standardization in the labora­tory can therefore be explained by:
• Production of reference standards
• Control in the production of calibrators
• Method validation protocols and their instrumental applicability
Production ofReference Standards
iIt is necessary to distinguish two important areas of the lab­oratory: the strictly chemical area and the immunochemical one. Concerning the rst one, it is easy to nd pure sub­stances and obtain primary standards by weighing them (e.g., glucose quantied by gravimetric procedure). Regarding the second area, standardization is more complex since the procedure represents the becoming of a strictly bio­logical process, including all its variables, hence the well­known problems of standardization of immunoassays. The Expert Committee on Biological Standardization (ECBS) of the World Health Organization (WHO) conrms interna­tional standards and other reference substances for biologi­cal uids. For some hormones and tumor markers, the National Institute for Biological Standards and Control (NIB- SC) is the reference. Other institutions, such as International Federation of Clinical Chemistry (IFCC), College of American Pathologists (CAP), and Clinical Laboratory Standard Institute (CLSI), collaborate in specic areas. The primary reference standards, characterized by puried substances and harmonization procedures between biological activity and concentration, are International Standard (IS) and International Reference Preparation (IRP).
• IS (lot/year) is always identied bya lot and year of pro­duction and is approved after a long process. They are available in small quantities, freeze-dried in protein “medium,” and can satisfy requests for a period of 10–20years.
• IRP (batch/year) is proposed by WHO despite a route that has not been fully rened. These standards are generally used to dene the concentrations of secondary standards,represented by sufciently pure substances. They are generally used to perform calibration curves and are stored to control them over time.
Control intheProduction ofCalibrators
The above procedures give rise to the certication of the cali­brator values accompanying the various diagnostic kits. A signicant element in the calibration procedure is instrumen­tation (immunochemistry is affected by non-dedicated instrumentation). Calibrators for immunochemistry kits are provided either to generate multipoint calibration curves (in ELISA and RIA procedures) or, in the presence of dedicated instrumentation, to transfer the new calibration to the one obtained “in-house” using only two calibration points. The evaluation of the latter procedure cannot disregard the knowledge of mathematical elements that are at the basis of the study of the curves. The two-point calibration procedure is generated on the following mathematical basis:
• The “in-house” curve, generated on more than one point, is often characterized by a sigmoid, characteristic of all biological phenomena, from which, through mathemati­cal processes (tting study), is extrapolated the interval of greater linearity, which is represented by a straight line and, as such, characterized by two important parameters, i.e., the angular coefcient and the intercept.
• The adjustment curve obtained in the laboratory bytwo calibrators is a straight line easily comparable with the one obtained “in-house” using the same parameters. The best adjustment is obtained by well-dened calibra­tors concentrations, one of which should represent the part closest to the limit of detection (LoD) and the other a point close to 50–60% of the linearity range. The com­parison of the parameters of the lines, whose knowledge allows for validation of the calibration, will transfer, together with specic algorithms, the obtained value to that of the curve obtained “in-house”.
Method Validation Protocols andTheir Instrumental Applicability
Instrumentation should never be thought of as an element to relieve the analyst’s responsibility for the reliability of mea­surements. This aspect allows a double evaluation of thetest limits and the instrumentation. The knowledge and verica­tion of the analytical sensitivity and the measurement linear­ity range, performed on the instrumentation in use, can contribute to analytical choices in which the error can be reduced. Knowledge of these aspects leads to a better setting and interpretation of quality control.
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O. Ruzzenente and C. Brentegani
Problems inStandardization ofImmunochemistry
The complexity of standardization in immunochemistry is generated by numerous problems, including protein het­erogeneity, matrix effects, cross-reactivity, the presence of heterophilic antibodies, and the need to measure con­centrations close to the limit of detection. In addition, the measured immunoreactivity often represents a mixture of protein isoforms that differ in their degree of glycosyl­ation, degradation, immune complex formation, and even activity.
For some proteins with purication difculties, IS and IRP standards report the concentration in U/L standardized in terms of bioactivity. This aspect is difcult to quantify mathematically and, therefore, more suitable for harmoniza­tion of the results than for standardization.
Good protein purication allows the expression of the mass concentration that most clearly reects what is being measured. However, even the determination of molar con­centration presents difculties since it can be accurately determined by amino acid analysis even in the presence of heterogeneity concerningthe carbohydrate composition and the isoelectric point.In contrast,the gravimetric determina­tion, especially for glycoproteins, is more inaccurate since the freeze-drying process fails to completely remove the water bound in the molecular structure.
Immunochemical reaction is based onan antigen, ananti­body, and the “matrix” in which they are located, which exerts its action by maintaining their tertiary structure unal­tered (immunoreactivity) through a suitable salt and protein concentration. The use of monoclonal antibodies has greatly improved specicity through the characterization of epitope mapping, knowledge of which would allow the immunoreac­tivity of dosage to be dened based on its similarity to the reference antibody.
Only validation protocols provide the means to under­stand their complexity and take action to improve their ana­lytical performance.
Recommended Readings
Calcatelli A L’incertezza di misura. INRIM Clinicals and Laboratory Standard Institute EP07-A2 Clinicals and Laboratory Standard Institute 2014 Plassa M, Le misure di grandezze siche, a cura di E.Arri e S.Sartori.
Torino: Paravia (1984) Revisione di E.Amico di Meane (INRIM–
Istituto Nazionale di Ricerche Metrologiche), 2009. dosaggio sulla
base della somiglianza con l’anticorpo di riferimento. Solo i proto-
colli di validazione forniscono i mezzi per capire, comprendere la
complessità di questi dosaggi e poter intervenire per migliorarne le
performance analitiche Price CP, Newman DJ (1997) Principles and practice of immunoassay,
2nd edn. Macmillan Reference, London Sant’Agostino De Civitate Dei. XI, 21
The Pre-analytical Phase
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DavideGiavarina
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Introduction
The clinical laboratory produces information, which is a response to the knowledge needs of clinicians and patients, through physical and chemical measurements of constituents in biological uids. Good laboratory information needs a good “analytical” phase of the measurement. However, all events that occur from the moment the doctor expresses the need for information to the moment the result of the mea­surements, properly interpreted, returns to the physician has importance in determining the quality and reliability of the information produced.
Thirty-ve years ago, George Lundberg introduced for the rst time the concept of the total testing process and described in his famous brain-to-brain loop, some of the essential events that make up the formation of information. Only one point of the loop represents the analytical phase, while all the others are part of the pre- and post-analytical phases (Fig.6.1).
In the overall process leading to the production of useful information for patient care based on measurements of the subject’s biological material, the pre-analytical phase includes all events and conditions that occur or are deter­mined before the chemical, physical, or biological analysis of the sample. It includes the formulation of the clinical question; the request of the examination; the planning; the recognition of the patient; the execution of the sampling or the collection of the sample; the identication of the sample; the transport; the evaluation of the suitability in relation to the container, volumes, times, temperatures, internal altera­tions of the sample; and the intra-laboratory pre-analytical treatment (centrifugation, storage, etc.).
It is commonly believed that laboratory errors are most frequent in the analytical phase, the phase with the greatest technical complexity. In reality, developments in technology
D. Giavarina (*) Laboratory Medicine, St. Bortolo Hospital, Vicenza, Italy e-mail: davide.giavarina@aulss8.veneto.it
and the attention devoted over the decades by specialists to controlling this phase have greatly reduced variability. In the analytical phase, moreover, quality objectives have been dened and constantly monitored through intra- and inter­laboratory quality controls, which provide for continuous and immediate corrective actions. On the other hand, the greatest risk of error occurs precisely in the pre- and post­analytical phases, amounting to over 80% of all cases. In par­ticular, more than 60% of all laboratory errors occur in the pre-analytical phase. Knowing and recognizing the most fre­quent errors in this phase allow laboratories to focus their efforts on improving quality and, consequently, patient care.
In recent years, it is more and more used to divide the pre­analytical phase into two parts: a pre-pre-analytical phase, which concerns all that happens before the analysis but out­side the laboratory or outside the control of the laboratory, and the real pre-analytical phase, which is what happens before the analysis but under the direct responsibility of the laboratory. The pre-pre-analytical phase includes test request, patient identication, collection, and transport, while sample handling, aliquoting, secondary labeling, and centrifugation belong to pre-analytical phase.
For expository purposes, we will distinguish pre-analytic problems into patient-related variables and sample-related variables. The latter may occur before, during, or after sam­ple collection.
Patient-Related Variables
We can distinguish “natural” variables, which are inevitable because they are determined by biological rhythms and by the continuous adaptation of the living organism to maintain its homeostasis, from deterministic variables, which are caused by or directly related to external actions or events, which can be modied. The rst is dened as biological vari­ability, while the second is pre-analytical variability related to the state and preparation of the patient.
© The Author(s), under exclusive license to Springer Nature Switzerland AG 2023 M. Ciaccio (ed.), Clinical and Laboratory Medicine Textbook, https://doi.org/10.1007/978-3-031-24958-7_6
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