PS-2020a / part17
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DICOM PS3.17 2020a - Explanatory Information |
Page 351 |
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Attribute Name |
Tag |
Attribute Description |
Example Value |
Comments |
>Specimen Short |
(0040,0600)Short textual specimen |
Part A: LEFT UPPER LOBE, BlockThis Attribute |
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Description |
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description |
5: Mass (2 pc), Slide 1: H&E |
concatenates four LIS |
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fields: 1. Specimen |
Received, 2. Cassette Summary, 3. Number of Pieces in Block, 4. Staining. This does not alwaysworkthisnicely. Often one or more of fields is empty or confusing.
Note
This field is limited to 64 characters
>Specimen Detailed (0040,0602)Detailed textual specimen Description description
A: Received fresh for intraoperativeThis is a mapping from consultation,labeledwiththepatient'sthe LIS Gross
name, number and "left upper lobe,"Description Field and isapink-tan,wedge-shapedsegmentthe Block Summary. of soft tissue, 6.9 x 4.2 x 1.0 cm. TheNote that in Case
pleural surface is pink-tan and |
S07-100,thereweresix |
glistening with a stapled line |
parts. This means the |
measuring 12.0 cm. in length. The LIS gross description pleural surface shows a 0.5 cm. areafield will have six
of puckering. The pleural surface issections (A - F). We inked black. The cut surface revealswould have to parse a 1.2 x 1.1 cm, white-gray, irregularthe gross description massabuttingthepleuralsurfaceandfield into those parts
deep to the puckered area. The |
(A-F) and then only |
remainder of the cut surface is |
incorporate section "A" |
red-brown and congested. No otherinto this Attribute. The lesionsareidentified.Representativesame would be true of
sections are submitted. |
the Blocks. |
Block 5: "Mass" (2 pieces) |
Note |
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One could |
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consider |
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listing all the |
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Blocks |
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associated |
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with Part A. It |
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wouldbeeasy |
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to do and |
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might give |
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useful |
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information. |
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DICOM PS3.17 2020a - Explanatory Information |
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Attribute Name |
Tag |
Attribute Description |
Example Value |
>Specimen |
(0040,0610)Sequence of Items identifying (see Table NN.6-4) |
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Preparation |
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the process steps used to |
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Sequence |
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preparethespecimenforimage |
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acquisition. One or more Items |
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maybepresent.ThisSequence |
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includes description of the |
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specimen sampling step from a |
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parent specimen, potentially |
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back to the original part |
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collection. |
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>>Specimen |
(0040,0612)Sequence of Content Items |
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Preparation Step |
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identifying the processes used |
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Content Item |
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in one preparation step to |
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Sequence |
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preparethespecimenforimage |
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acquisition. One or more Items |
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may be present. |
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>Primary Anatomic (0008,2228)Original anatomic location in Structure Sequence patient of specimen. This
location may be inherited from the parent specimen, or further refined by modifiers depending on the sampling procedure for this specimen.
>>Code Value |
(0008,0100) |
44714003 |
>>Coding Scheme |
(0008,0102) |
SCT |
Designator |
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>>Code Meaning |
(0008,0104) |
Left Upper Lobe of Lung |
Comments
This is a code sequence item
The example Specimen Preparation Sequence first describes the most recent processing of the slide (staining), then goes back to show its provenance. Notice that there is no sampling process for the slide described here; the LIS did not record the step of slicing of blocks into slides.
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Table NN.6-4. Specimen Preparation Sequence for Slide |
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SpecimenSpecimenTemplate / RowValue TypeConcept Name Code Sequence Example Value Comments |
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PreparationPrep.Step |
(0040,A040) |
(0040,A043) |
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Sequence -Content |
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Item # |
Item |
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Sequence |
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- Item # |
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1 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A |
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Identifier") |
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2 |
8001 / 2 |
TEXT |
(111724, DCM, "Issuer of |
Case Medical Center |
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Specimen Identifier") |
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Part
Collection
in OR.
3 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(17636008, SCT, |
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"Specimen collection") |
4 |
8001 / 4 |
DATETIME |
(111702, DCM, "DateTime of |
200703230827 |
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processing") |
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5 |
8001 / 5 |
TEXT |
(111703, DCM, "Processing stepTaken |
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description") |
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6 |
8001 / 8 |
CODE |
(111704, DCM, "Sampling |
(65801008, SCT, |
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8002 / 1 |
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Method") |
"Excision") |
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SpecimenSpecimenTemplate / RowValue TypeConcept Name Code Sequence |
Example Value Comments |
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PreparationPrep.Step |
(0040,A040) |
(0040,A043) |
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Sequence -Content |
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Item # |
Item |
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Sequence |
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- Item # |
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2 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A |
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Identifier") |
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2 |
8001 / 2 |
TEXT |
(111724, DCM, "Issuer of |
Case Medical Center |
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Specimen Identifier") |
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3 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(428995007, SCT, |
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"Specimen Receiving") |
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4 |
8001 / 4 |
DATETIME |
(111702, DCM, "DateTime of |
200703230943 |
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processing") |
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3 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A 5 |
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Identifier") |
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2 |
8001 / 2 |
TEXT |
(111724, DCM, "Issuer of |
Case Medical Center |
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Specimen Identifier") |
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3 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(433465004, SCT, |
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"Sampling of tissue |
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specimen") |
Specimen received in Pathology department
Samplingto block
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4 |
8001 / 5 |
TEXT |
(111703, DCM, "Processing stepBlock Creation |
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description") |
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5 |
8001 / 8 |
CODE |
(111704, DCM, "Sampling |
(122459003, SCT, |
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8002 / 1 |
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Method") |
"Dissection") |
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6 |
8001 / 8 |
TEXT |
(111705,DCM,"ParentSpecimenS07-100 A |
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8002 / 2 |
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Identifier") |
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7 |
8001 / 8 |
TEXT |
(111706, DCM, "Issuer of ParentCase Medical Center |
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8002 / 3 |
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Specimen Identifier") |
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8 |
8001 / 8 |
CODE |
(111707, DCM, "Parent specimen(38866009, SCT, |
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8002 / 4 |
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type") |
"Anatomic part") |
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9 |
8001 / 8 |
TEXT |
(111709, DCM, "Location of |
Mass |
This is |
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8002 / 6 |
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sampling site") |
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coming |
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from the |
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summaryof |
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blocks field |
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in the LIS |
4 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A 5 |
Block |
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Identifier") |
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Processing |
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2 |
8001 / 2 |
TEXT |
(111724, DCM, "Issuer of |
Case Medical Center |
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Specimen Identifier") |
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3 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(9265001, SCT, |
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"Specimen Processing") |
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4 |
8001 / 4 |
DATETIME |
(111702, DCM, "DateTime of |
200703231900 |
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processing") |
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5 |
8001 / 5 |
TEXT |
(111703, DCM, "Processing stepStandard Block |
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description") |
Processing (Formalin) |
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DICOM PS3.17 2020a - Explanatory Information |
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SpecimenSpecimenTemplate / RowValue TypeConcept Name Code Sequence Example Value |
Comments |
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PreparationPrep.Step |
(0040,A040) |
(0040,A043) |
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Sequence -Content |
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Item # |
Item |
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Sequence |
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- Item # |
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6 |
8001 / 10 |
CODE |
(430864009, SCT, "Tissue |
(111095003, SCT, |
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Fixative") |
"Formalin") |
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5 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A 5 |
Block |
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Identifier") |
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embedding |
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2 |
8001 / 2 |
TEXT |
(111724, DCM, "Issuer of |
Case Medical Center |
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Specimen Identifier") |
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3 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(9265001, SCT, |
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"Specimen Processing") |
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4 |
8001 / 4 |
DATETIME |
(111702, DCM, "DateTime of |
200703240500 |
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processing") |
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5 |
8001 / 5 |
TEXT |
(111703, DCM, "Processing stepEmbedding (paraffin) |
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description") |
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6 |
8001 / 11 |
CODE |
(430863003, SCT, "Embedding (255667006, SCT, |
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medium") |
"Paraffin") |
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6 |
1 |
8001 / 1 |
TEXT |
(121041, DCM, "Specimen |
S07-100 A 5 1 |
Slide |
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Identifier") |
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Staining |
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2 |
8001 / 3 |
CODE |
(111701,DCM,"Processingtype")(127790008, SCT, |
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"Staining") |
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3 |
8001 / 4 |
DATETIME |
(111702, DCM, "DateTime of |
200703240700 |
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processing") |
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4 |
8001 / 9 |
TEXT |
(424361007, SCT, "Using |
H&E (1) |
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8003 / 2 |
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substance") |
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NN.7 Specimen Data in Pathology Imaging Workflow Management
Workflow management in the DICOM imaging environment utilizes the Modality Worklist (MWL) and Modality Performed Procedure Step(MPPS)services.Withinthepathologydepartment,theseservicessupportbothhumancontrolledimaging(e.g.,grossspecimen photography), as well as automated slide scanning modalities.
While this section provides an overview of the DICOM services for managing workflow, the reader is referred to the IHE Anatomic Pathology Domain Technical Framework for specific use cases and profiles for pathology imaging workflow management.
NN.7.1 Modality Worklist
The contents of the Specimen Module may be conveyed in the Scheduled Specimen Sequence of the Modality Worklist query. This feature allows an imaging system (Modality Worklist SCU) to query for work items by Container ID. The worklist server (SCP) of the laboratory information system can then return all the necessary information for creating a DICOM specimen-related image. This in- formation includes patient identity and the complete slide processing history (including stain applied). It may be used for imaging set- up and/or inclusion in the Image SOP Instance.
NN.7.1.1 MWL for Whole Slide Imaging
In addition to the Specimen Module Attributes, the set up of an automated whole slide scanner requires the acquisition parameters such as scan resolution, number of Z-planes, fluorescence wavelengths, etc. A managed set of such parameters is called a Protocol (see PS3.3), and the MWL response may contain a Protocol Code to control scanning set up. Additional set-up parameters can be passedasContentItemsintheassociatedProtocolContextSequence;thismightbeimportantwhenthereadingpathologistrequests a rescan of the slide with slightly different settings.
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NN.7.2 Modality Performed Procedure Step
When scanning is initiated, the scanner reports the procedure step in a Modality Performed Procedure Step (MPPS) transaction.
Upon completion (or cancellation) of an image acquisition, the modality reports the work completed in an update to the MPPS. The MPPScanconveyboththeContainerIDandtheimageUIDs,sothattheworkflowmanager(laboratoryinformationsystem)isadvised of the image UIDs associated with each imaged specimen.
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DICOM PS3.17 2020a - Explanatory Information |
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OO Structured Display (Informative)
OO.1 Structured Display Use Cases
OO.1.1 Dentistry
Intra-oralradiographytypicallyinvolvesacquisitionofmultipleimagesofvariouspartsofthedentition.Manydigitalradiographicsystems offer customized templates that are used for displaying the images in a study on the screen. These templates may also be referred to as mounts or view sets. The Structured Display Object represents a standard method of encoding and exchanging the layout and intendeddisplayofStructuredDisplays.Astructureddisplayobjectcreatedinthismannercouldbestoredwithastudyandexchanged with images to allow for complete reproduction of the original exam.
1.A patient visits a General Dentist where a Full Mouth Series Exam with 18 images is acquired. The dentist observes severe bone loss and refers the patient to a Periodontist. The 18 images from the Full Mouth Series along with a Structured Display are copied to a DICOM Interchange CD and sent with the patient to see the specialist. The Periodontist uses the CD to open the exam in his Dental Radiographic Software and consults via phone with the General Dentist. Both are able to observe the same exam showing the images on each user's display using the exact same layout.
Image Box |
Text Box |
(1.0, 1.0) |
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(0.0, 0.0) |
(1.0, 0.0) |
BLHC |
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Figure OO-1. Intra-oral Full Mouth Series Structured Display
2.A patient requests cosmetic surgery to enhance their facial appearance. The case requires consultation between an orthodontist in New York and an oral surgeon in California. The cephalometric series of 2D projections constructed from the volumetric CT data that is used for the discussion is arranged by a Structured Display for transfer between the two practitioners.
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DICOM PS3.17 2020a - Explanatory Information |
Figure OO-2. Cephalometric Series Structured Display
3.AdentalproviderwishestocaptureaseriesofDICOMIOimagesforthepatient’sdentition.Thetoothmorphology,teetharedivided into molars, premolars, canines and incisors, and a number of images for each jaw. The anatomic information was captured utilizing the triplet of schema. This standard code sequence is based on ISO 3950-2010, Dentistry - Designation system for teeth and areas of the oral cavity.
Every IO image should have anatomic information either through the primary or modifier sequence.
In most standard cases, images are oriented in structured layouts. These structured displays are useful to be shared between providers for reference purposes.
Table OO.1.1-1 shows structured display standard templates, where Viewset ID is based on the Japanese Society for Oral and Maxillofacial Radiology (JSOMR) classification provided by JIRA (Japan Medical Imaging and Radiological Systems Industries Association, www.jira-net.or.jp). Expected or typical teeth to be imaged location, region and designation codes are based on ISO 3950-2010, Dentistry - Designation system for teeth and areas of the oral cavity. For all the hanging protocols listed in OO.1.1- 1, the value to use for Hanging Protocol Creator (0072,0008) is "JSOMR" and the value to use for Hanging Protocol Name (0072,0002) does not include "JSOMR" (e.g., "DL-S001A", not "JSOMR DL-S001A").
Table OO.1.1-1. Hanging Protocol Names for Dental Image Layout based on JSOMR classification
Hanging |
Image |
ImageSizeISO Teeth Designation |
Protocol |
Location |
(typical) |
Name |
Code |
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10 Standard A Dental Image Layout |
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DICOM PS3.17 2020a - Explanatory Information |
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Hanging
Protocol
Name
DL-S001A
Reference:
10 Standard+2 Bitewing A Dental Image Layout
DL-S002A
Layout A Reference:
10 Standard A Dental Image Layout
DL-S003A
Reference:
Standard A Dental Image Layout
Image |
ImageSizeISO Teeth Designation |
Location |
(typical) |
Code |
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00 |
18, 17, 16, 15 |
01 |
14, 13, 12 |
02 |
12, 11, 21, 22 |
03 |
22, 23, 24 |
04 |
25, 26, 27, 28 |
10 |
48, 47, 46, 45 |
11 |
44, 43, 42 |
12 |
42, 41, 31, 32 |
13 |
32, 33, 34 |
14 |
35, 36, 37, 38 |
00 |
18, 17, 16, 15 |
01 |
14, 13, 12 |
02 |
12, 11, 21, 22 |
03 |
22, 23, 24 |
04 |
25, 26, 27 |
10 |
47, 46, 45 |
11 |
44, 43, 42 |
12 |
42, 41, 31, 32 |
13 |
32, 33, 34 |
14 |
35, 36, 37 |
20 |
18, 17, 16, 15, |
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48, 47, 46, 45 |
24 |
25, 26, 27,28, |
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35, 36, 37, 38 |
00 |
18, 17, 16, 15 |
01 |
14, 13, 12 |
02 |
12, 11 |
03 |
21, 22 |
04 |
22, 23, 24 |
05 |
25, 26, 27, 28 |
10 |
48, 47, 46, 45 |
11 |
44, 43, 42 |
12 |
42, 41 |
13 |
31, 32 |
14 |
32, 33, 34 |
15 |
35, 36, 37, 38 |
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DICOM PS3.17 2020a - Explanatory Information |
Hanging
Protocol
Name
DL-S004A
Reference:
14 Standard B Dental Image Layout
DL-S004B
Reference:
14 Standard+4 Bitewing A Dental Image Layout
DL-S005A
Reference:
Image |
ImageSizeISO Teeth Designation |
Location |
(typical) |
Code |
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00 |
18, 17, 16 |
01 |
16, 15, 14 |
02 |
14, 13, 12 |
03 |
12, 11, 21, 22 |
04 |
22, 23, 24 |
05 |
24, 25, 26 |
06 |
26, 27, 28 |
10 |
48, 47, 46 |
11 |
46, 45, 44 |
12 |
44, 43, 42 |
13 |
42, 41, 31, 32 |
14 |
32, 33, 34 |
15 |
34, 35, 36 |
16 |
36, 37, 38 |
00 |
18, 17, 16 |
01 |
16, 15, 14 |
02 |
14, 13, 12 |
03 |
12, 11, 21, 22 |
04 |
22, 23, 24, 25 |
05 |
24, 25, 26, 27 |
06 |
25, 26, 27, 28 |
10 |
48, 47, 46, 45 |
11 |
47, 46, 45, 44 |
12 |
44, 43, 42 |
13 |
42, 41, 31, 32 |
14 |
32, 33, 34 |
15 |
34, 35, 36, 37 |
16 |
35, 36, 37, 38 |
00 |
18, 17, 16, 15 |
01 |
17, 16, 15, 14 |
02 |
14, 13, 12, 11, |
03 |
12, 11, 21, 22 |
04 |
21, 22, 23, 24, |
05 |
24, 25, 26 |
06 |
25, 26, 27, 28 |
10 |
48, 47, 46, 45 |
11 |
46, 45, 44, 43 |
12 |
44, 43, 42 |
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