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at preventing/inhibiting tumors. However, if the cell’s DNA cannot be repaired, the p53 protein can then cause apoptosis (“programmed cell death”) to prevent development of (cancerous) tumors. See also GENE,

p53 GENE, TUMOR-SUPPRESSOR GENES, ras GENE, ras PROTEIN, GENETIC CODE, MEIOSIS, CARCINOGEN, DEOXYRIBONUCLEIC ACID (DNA), AFLATOXIN, RIBOSOMES, ONCOGENES, CANCER,

TUMOR, PROTO-ONCOGENES, PROTEIN, TRANSCRIP-

TION FACTORS, DOMAIN (OF A PROTEIN), APOPTO-

SIS.

Paclitaxel An anticancer compound (pharmaceutical) that was originally isolated from the Pacific yew tree (Taxus brevifolia), although it is made synthetically today. In 1966, Maurice Wall first identified antitumor effects in an extract from Taxus brevifolia. In 1992, the U.S. Food and Drug Administration approved paclitaxel for use to treat recurrent ovarian cancer. Other anticancer uses were later approved. When injected into the human body, paclitaxel also inhibits growth of the parasitic microorganism Toxoplasma gondii (which can cause loss of sight and neurological disease in humans, if not controlled). See also CANCER,

TAXOL, FOOD AND DRUG ADMINISTRATION

(FDA), CHEMOTHERAPY, TUBULIN, MICROORGAN-

PPAF Acronym for Platelet Activating Factor.ISM, GROWTH (MICROBIAL).

See also CHOLINE.

PAGE See POLYACRYLAMIDE GEL ELECTROPHORE-

SIS (PAGE).

Palindrome A DNA molecule sequence that is the same when one strand of the molecule is read left to right and the other strand is read right to left. See also DEOXYRIBONUCLEIC

ACID (DNA), READING FRAME.

Palmitate See PALMITIC ACID.

Palmitic Acid A saturated fatty acid containing sixteen carbon atoms in its molecular “backbone”; which tends to increase cholesterol levels in the bloodstream when consumed by humans. It has been shown that feeding of extruded (whole) high-oleic oil soybeans to dairy cattle did decrease the content of palmitic acid in their milk. See also

FATTY ACID, SATURATED FATTY ACIDS (SAFA),

CHOLESTEROL, HIGH-OLEIC OIL SOYBEANS.

Pancreas An organ (gland) located near the stomach that secretes insulin and glucagon into the bloodstream, and digestive fluids into the intestines. See also DNASE, INSULIN,

GLUCAGON, BETA CELLS, TYPE I DIABETES, TYPE II

DIABETES, DIABETES.

Papovavirus A class of animal viruses, e.g., SV40 and polyoma. See also VIRUS.

Parkinson’s Disease A disease of the human brain, in which those nerve cells (neurons) associated with emotions and those neurons that are involved in controlling movement (motor control) die. Discovered in 1919 by doctors treating an epidemic of encephalitis lethargica (onset of Parkinson’s disease commonly follows encephalitis, but it can also be induced by certain drugs, etc.). The (natural) cause of Parkinson’s disease (i.e., causing a dwindling supply of dopamine in the brain) is unknown although it can be induced by drug misuse. When a human brain is functioning normally, cells within a region of the brain called the substantia nigra initiate motor (i.e., muscle) activity by releasing the chemical “messenger” known as dopamine. In the brain of a person suffering from Parkinson’s disease, those dopam- ine-producing cells die off, causing a progressive loss of motor control for that

person. See also NEUROTRANSMITTER, CILIARY NEUROTROPHIC FACTOR (CNTF), SIGNALING,

GLIAL DERIVED NEUROTROPHIC FACTOR (GDNF),

OXIDATIVE STRESS, NEURON.

PARP Acronym for Poly ADP-ribose Polymerase (an enzyme naturally present in human cells that is involved in control of apoptosis, among other cellular processes). This enzyme can be commercially produced (e.g., to manufacture tests) by genetically engineered hamster cells grown in cell culture. This enzyme can be utilized by man in order to determine/test if a given substance (e.g., industrial chemical) is carcinogenic to

humans. See also ENZYME, ADENOSINE DIPHOSPHATE (ADP), RIBOSE, POLYMERASE, CELL, APOPTOSIS, CELL CULTURE, MAMMALIAN CELL CULTURE, CARCINOGEN, CANCER, NUCLEAR MATRIX PROTEINS, GENETIC ENGINEERING, AMES TEST.

Particle Cannon See BIOLISTIC R GENE GUN,

MICROPARTICLES.

© 2002 by CRC Press LLC

Particle Gun See BIOLISTIC® GENE GUN, MICRO-

known as the host. It should be noted that

 

PARTICLES, “SHOTGUNMETHOD.

infection is not synonymous with disease

 

Partition Coefficient A constant (number)

because infection does not always lead to

 

that expresses the ratio in which a given

injury of the host. See also VIRUS, BACTERIA,

 

solute will be partitioned (distributed)

PROTOZOA, MICROORGANISM, STRESS PROTEINS,

 

between two given immiscible liquids (e.g.,

ANTIGEN, IMMUNE RESPONSE, PHYTOALEXINS,

 

oil and water) at equilibrium.

PATHOGENESIS RELATED PROTEINS.

 

Partitioning Agent Any one of a number of

Pathogenesis Related Proteins P r o t e c t i v e

 

chemical compounds (e.g., certain hor-

(i.e., disease-fighting) proteins that are pro-

 

mones, conjugated fatty acids, etc.) which

duced within certain plants in response to

 

cause a given animal’s metabolism to deposit

the entry-into-plant of plant pathogens (bac-

 

significantly more lean muscle tissue and

teria, fungi, etc. that infect and cause disease

 

significantly less fat tissue within that (grow-

in plants). One pathogenesis-related protein

 

ing) animal’s body. See also BOVINE SOMA-

is chitinase, a protein enzyme that degrades

 

TOTROPIN (BST), PORCINE SOMATOTROPIN (PST),

(breaks down) the chitin within cell walls of

 

CONJUGATED LINOLEIC ACID (CLA), CARNITINE,

pathogenic fungi. Production of pathogene-

 

METABOLISM, FATS.

sis-related proteins is often initiated by sig-

 

Passive Immunity An immune response (to a

naling molecules (e.g., harpin) produced by

 

pathogen) that results from injecting another

the pathogens. See also PROTEIN, PATHOGEN,

 

organism’s antibodies into the organism that

BACTERIA, FUNGUS, CHITINASE, CHITIN, CELL,

 

is being challenged by the pathogen. See

ENZYME, SIGNALING, SIGNALING MOLECULE,

 

also POLYCLONAL ANTIBODIES, HUMORAL IMMU-

HARPIN, HYPERSENSITIVE RESPONSE.

 

NITY, ANTIBODY, COMPLEMENT, COMPLEMENT

Pathogenic Disease-causing. See also PATHOGEN.

 

CASCADE, IMMUNOGLOBULIN, PATHOGEN, ANTI-

Pathway A sequential series of chemical reac-

 

GEN, MONOCLONAL ANTIBODIES (MAb).

tions, each of which is dependent on previ-

 

PAT Gene A dominant gene isolated from the

ous ones in the pathway (e.g., the third

 

Streptomyces viridochromogenes bacterium

reaction requires chemical product produced

 

which codes for (causes production of) the

by first/second chemical reactions), that —

 

enzyme phosphinothricin acetyl transferase

overall — yields a beneficial impact. For

 

(PAT). When the PAT gene is inserted into a

example, metabolism (i.e., the entire set of

 

P

plant’s genome, it imparts resistance to glufo-

enzyme-catalyzed chemical reactions which

sinate-ammonium containing herbicides.

converts food into nutrients that can be used

 

Because the glufosinate-ammonium herbi-

by the body’s cells and the use of these nutri-

 

cides act via inhibition of glutamine syn-

ents by the body’s cells to sustain life, grow,

 

thetase (an enzyme that catalyzes the synthesis

etc.) occurs via a very specific METABOLIC

 

of glutamine), this inhibition of enzyme kills

PATHWAY. See also METABOLISM, ACC SYNTHASE,

 

plants (e.g., weeds). That is because glutamine

R GENES, PATHWAY FEEDBACK MECHANISMS.

 

is crucial for plants to synthesize critically

Pathway Feedback Mechanisms Chemically

 

needed amino acids. The PAT gene is also

based mechanisms (e.g., series of chemical

 

often used by genetic engineers as a marker

reactions) that hinder (or increase rate of) a

 

gene. See also GENE, GENOME, GENETIC ENGI-

given pathway. For example, when the body

 

NEERING, MARKER (GENETIC MARKER), BAR GENE,

of bacteria need catabolism (i.e., energy pro-

 

DOMINANT ALLELE, ESSENTIAL AMINO ACIDS, HER-

duction) to be slowed down, it uses the

 

BICIDE-TOLERANT CROP, GTS, SOYBEAN PLANT,

mechanism of catabolite repression (to slow

 

CANOLA, CORN, GLUTAMINE, GLUTAMINE SYN-

down catabolism via chemical/reaction

 

THETASE, PHOSPHINOTHRICIN, PHOSPHINOTHRICIN

means). See also PATHWAY, METABOLISM,

 

ACETYLTRANSFERASE (PAT).

CATABOLISM, CATABOLITE REPRESSION.

 

Pathogen Refers to a virus, bacterium, para-

PBR The intellectual property rights that are

 

sitic protozoan, or other microorganism that

legally accorded to plant breeders by laws,

 

causes infectious disease by invading the

treaties, etc. Similar to patent law for inven-

 

body of an organism (animal, plant, etc.)

tors. See also PLANT BREEDERS RIGHTS (PBR),

 

© 2002 by CRC Press LLC

PLANTS NOVEL TRAIT (PNT), PLANT VARIETY

PROTECTION ACT (PVP), EUROPEAN PATENT CON-

VENTION, EUROPEAN PATENT OFFICE (EPO), U.S.

PATENT AND TRADEMARK OFFICE (USPTO).

pBR322 An Escherichia coli (E. coli) plasmid cloning vector that contains the ampicillin resistance and tetracycline resistance genes. It consists of a circle of double-stranded

DNA. See also E S C H E R I C H I A C O L I F O R M

(E. COLI), PLASMID, VECTOR, DEOXYRIBONUCLEIC

ACID (DNA).

PC Phosphatidyl choline. See also LECITHIN

(refined, specific), LECITHIN (crude, mixture).

PCR See POLYMERASE CHAIN REACTION (PCR).

PDCAAS See PROTEIN DIGESTIBILITY-CORRECTED

AMINO ACID SCORING (PDCAAS).

PDE See PHOSPHODIESTERASES.

PDGF See PLATELET-DERIVED GROWTH FACTOR

(PDGF).

PDWGF See PLATELET-DERIVED WOUND GROWTH

FACTOR (PDWGF).

Pectinophora gossypiella Also known as the pink bollworm, this is one of three insect species that are called “bollworms” (when they are on cotton plants). The holes that they chew in cotton plants’ bolls have been shown to enable the Aspergillas flavus fungus to infect those (chewed) cotton plants.

See also B.t. KURSTAKI, HELICOVERPA ZEA (H. ZEA),

HELIOTHIS VIRESCENS, BRIGHT GREENISH-YELLOW

PFLUORESCENCE (BGYF).

PEG-SOD (polyethylene glycol superoxide dismutase) A modified version of the enzyme human superoxide dismutase (hSOD), in which polyethylene glycol (a polymer made up of ethylene glycol monomers) is combined with the hSOD molecule. The PEG seems to wrap around or about the enzyme in such a way that the whole complex is able to exist in the blood for longer periods of time than the unmodified hSOD enzyme. This is because the PEG effectively camouflages the hSOD molecule and hence protects it from being inactivated by the body’s own defense mechanisms in the bloodstream. This technology is important in that hSOD is used to fight certain diseases by injecting it into the body. However, the SOD must be present in the body for extended periods of time in order to effectively work, and since the injected SOD is a

foreign molecule, the body tries to destroy it (and hence its function) as quickly as pos-

sible. See also HUMAN SUPEROXIDE DISMUTASE

(hSOD), CATALASE, ENZYME.

Penicillin G (benzylpenicillin) The original penicillin (antibiotic) molecule, discovered by Alexander Fleming in 1928, in a petri dish (experiment) ‘spoiled’ by accidental introduction of a mold. Fleming named the antibiotic after the particular mold (Penicillium notatum) that had produced it. During the 1940s, scientists at the U.S. Department of Agriculture in Peoria, Illinois (in the U.S.), discovered how to produce commercial quantities of Penicillin G by utilizing the fungus Penicillium chrysogenum, which they found growing on a canteloupe in Peoria. Penicillin kills bacteria by blocking an enzyme which is crucial to growth and repair of the bacteria’s cell wall (peptidoglycan layer), but penicillin does not harm other species, so it is species-specific to certain pathogenic bacteria (e.g., streptococcus, meningococcus, and diphtheria bacillus).

See also ANTIBIOTIC, FUNGUS, BACTERIA,

ENZYME, SPECIES SPECIFIC, PENICILLIUM, BETA-

LACTAM ANTIBIOTICS, BACILLUS.

Penicillinases (E.C. 3.5.2.6) Also known as

β-lactamases, these are enzymes that hydrolyze (break down) the β-lactam ring (portion) of the penicillin molecule’s structure. Some microorganisms (e.g., pathogenic bacteria) have become able to produce these enzymes as a defense to penicillin and cephalosporin antibiotics (drugs). See also

ENZYME, HYDROLYZE, PENICILLIN G (BENZYLPEN-

ICILLIN), PATHOGENIC, BACTERIA, ANTIBIOTIC,

ANTIBIOTIC RESISTANCE.

Penicillium Refers to the genus of fungi (mold) that belongs to the category Deutromycotina and often causes (food) spoilage. Some of the genus have been utilized commercially to produce antiboiotics. See also

GENUS, FUNGUS, OCHRATOXINS, ANTIBIOTIC, PEN-

ICILLIN G (benzylpenicillin).

Pentose A simple sugar (monosaccharide molecule) whose backbone structure contains five carbon atoms. There exists many different pentoses. Some examples of pentoses are ribose, arabinose, and xylose. See also

MONOSACCHARIDES.

© 2002 by CRC Press LLC

Pepsin A crystallizable proteinase (enzyme) that in an acidic medium digests (breaks down) most proteins to polypeptides. It is secreted by glands in the mucous membrane of the stomach of higher animals. In combination with dilute hydrochloric acid, it is the chief active principle (component) of gastric juice. Also used in manufacturing peptones and in digesting gelatin for the recovery (i.e., recycling) of silver from photographic film.

See also DIGESTION (WITHIN ORGANISMS), PROTEIN, PEPTIDE, LACTOFERRIN, PEPTONE.

Peptidase A n e n z y m e t h a t h y d r o l y z e s (cleaves) a peptide bond. See also PEPTIDE

BOND, PEPSIN, PEPTONE, PEPTIDE MAPPING

(“FINGERPRINTING”).

Peptide Two or more amino acids covalently joined by peptide bonds. An oligomer component of a polypeptide. A dipeptide, for example, consists of two (di) amino acids joined together by a peptide bond or linkage. By analogy, this structure would correspond to two joined links of a chain. See also

POLYPEPTIDE (PROTEIN), OLIGOMER, AMINO ACID.

Peptide Bond A covalent bond (linkage) between the α-amino group of one amino acid and the α-carboxyl group of another amino acid. This is the linkage or bond which holds the amino acids (chain links) together in a polypeptide chain. It is the allimportant bond which holds the amino acid monomers together to form the polymer known as a polypeptide. See also PEPTIDE,

POLYPEPTIDE (PROTEIN), OLIGOMER.

Peptide Mapping (fingerprinting) Refers to the characteristic pattern of peptides (i.e., pieces that make up a protein molecule) resulting from partial hydrolysis (cleavage, digestion) of a protein. The pattern (fingerprint) is obtained by separating the peptides via two-dimensional chromatography, in which the peptides are first subjected to chromatography using one solution which separates many, but not all, peptides. The chromatogram is then turned 90°, and is again chromatographed using a second solution, which then separates all of the peptides; thereby producing the final “fingerprint” of the protein. See also CHROMATOGRAPHY,

PEPTIDE, PROTEIN, HYDROLYSIS.

Peptide Nanotube See SELF-ASSEMBLY (OF A

LARGE MOLECULAR STRUCTURE).

Peptido-Mimetic See BIOMIMETIC MATERIALS,

PEPTIDE.

Peptone A protein that has been partially hydro-

 

lyzed (cleaved) by the peptidase pepsin. See

 

also PROTEIN, HYDROLYTIC CLEAVAGE, PEPTIDASE,

 

PEPSIN, PEPTIDE MAPPING (“FINGERPRINTING”).

 

Perforin A 70 Kd (kilodalton) protein that is

 

instrumental in the lysis of infected cells. A

 

series of reactions occurs on the surface of

 

a cell which results in the polymerization of

 

certain monomers to form transmembrane

 

(through the membrane) pores 100 Å (Ang-

 

stroms) wide, which allows ions to rush into

 

the cell (due to osmotic pressure) and thus

 

burst (lyse) that cell, so the (formerly) inter-

 

nal pathogens can be attacked by the body’s

 

immune system. Perforin is a protein that is

 

akin to the C9 component of the comple-

 

ment. See also OSMOTIC PRESSURE, COMPLE-

 

MENT, COMPLEMENT CASCADE, Kd, CYTOTOXIC

 

T CELLS , CECROPHINS, MAGAININS, OSMOTINS.

 

Periodicity The number of base pairs per turn

 

of the DNA double helix. See also DEOXY-

 

RIBONUCLEIC ACID (DNA).

 

Periodontium Tissue that anchors teeth in the

 

jaw. Regrowth of periodontal tissue can be

 

stimulated by a combination of platelet-

 

derived growth factor and insulin-like

 

P

growth factor-1. See also PLATELET-DERIVED

GROWTH FACTOR (PDGF), INSULIN-LIKE GROWTH

 

FACTOR-1 (IGF-1).

 

Peritoneal Cavity/Membrane The smooth,

 

transparent, serous membrane that lines the

 

cavity of the abdomen of a mammal.

 

Peroxidase An enzyme that catalyzes the oxi-

 

dation of a substrate with hydrogen peroxide

 

(as the electron acceptor, so the hydogen

 

peroxide is reduced). Peroxidase is naturally

 

produced in soybeans by approximately half

 

of all commercial soybean varieties. Perox-

 

idase very effectively inhibits (stops) growth

 

of any Aspergillus flavus fungi that might be

 

present (e.g., in the soil). Peroxidase can be

 

used to replace more toxic and environmen-

 

tally problematic chemicals in certain indus-

 

trial processes. Among other applications,

 

peroxidase can replace formaldehyde use in

 

paints, varnishes, glues, and computer chip

 

manufacturing. See also ENZYME, OXIDIZING

 

© 2002 by CRC Press LLC