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Glossary of Biotechnology Terms - Kimball Nill.pdf
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STEREO-

Diastereoisomers Four variations of a given molecule, consisting of a pair of stereoisomers about a second asymmetric carbon atom for each of the two isomers of the first asymmetric carbon atom. See also

ISOMERS, CHIRAL COMPOUND.

Differentiation Refers to processes by which a single type of cells (stem cells, embryonic stem cells, etc.) become multiple, different types of (specialized) cells. See also CELL,

STEM CELLS, STEM CELL ONE, STEM CELL GROWTH

FACTOR (SCF), TOTIPOTENT STEM CELLS, COLONY

STIMULATING FACTORS (CSFs), EMBRYONIC STEM

CELLS, HUMAN EMBRYONIC STEM CELLS, GRANU-

LOCYTE-MACROPHAGE COLONY STIMULATING

FACTOR (GM-CSF), HEDGEHOG PROTEINS.

Digestion (within chemical production plants) Breakdown of feed stocks by various processes (chemical, mechanical, and biological) to yield their desired building-block components for inclusion as raw materials in subsequent chemical or biological processes.

Digestion (within organisms) The enzymeenhanced hydrolysis (breakdown) of major nutrients (food) in the gastrointestinal system to yield their building-block components (to the organism), such as amino acids, fatty acids, or other essential nutrients. See

also HYDROLYSIS, FATS, PROTEIN, AMINO ACID,

ESSENTIAL AMINO ACIDS, ESSENTIAL NUTRIENTS,

FATTY ACID, ESSENTIAL FATTY ACIDS, LIPASE,

IDEAL PROTEINCONCEPT, ENZYME, PROTEASES,

PROTEOLYTIC ENZYMES, ABSORPTION, TRYPSIN,

LECITHIN, PROTEIN DIGESTIBILITY-CORRECTED

AMINO ACID SCORING (PDCAAS).

Diglycerides See TRIGLYCERIDES.

Diphtheria Antitoxin Discovered by Emil von Behring in 1900. See also ANTITOXIN,

ENTEROTOXIN.

Diploid The state of a cell in which each of the chromosomes, except for the sex chromosomes, is always represented twice (46 chromosomes in humans). In contrast to the haploid state in which each chromosome is represented only once. See also DIPLOPHASE,

CHROMOSOMES, HOMOZYGOUS, TRIPLOID.

Diplophase A phase in the life cycle of an organism in which the cells of the organism have two copies of each gene. When this

state exists the organism is said to be diploid.

See also DIPLOID, GENE, HOMOZYGOUS, CELL.

Direct Transfer Refers to methods of insert-

 

ing a gene directly into a cell’s DNA without

 

the use of a vector. One example of direct

 

transfer is electroporation. See also GENE,

 

GENETIC ENGIEERING, VECTORS, CELL, DEOXY-

 

D

RIBONUCLEIC ACID (DNA), ELECTROPORATION.

 

Directed Self-Assembly See SELF-ASSEMBLY

 

(OF A LARGE MOLECULAR STRUCTURE).

 

 

Disaccharides Carbohydrates consisting

of

 

two covalently linked monosaccharide units; hence di for two. See also OLIGOSACCHARIDES,

MONOSACCHARIDES, POLYSACCHARIDES.

Dissimilation The breakdown of food material to yield energy and building blocks for cellular synthesis. See also DIGESTION (WITHIN

ORGANISMS).

Dissociating Enzymes See HARVESTING ENZYMES.

Distribution See “ADMETESTS, PHARMACOKI-

NETICS.

Disulfide Bond An important type of covalent bond formed between two sulfur atoms of different cysteines in a protein. Disulfide bonds (linkages, bridges) contribute to holding proteins together and also help provide the internal structure (conformation) of the protein.

See also PROTEIN, CYSTEINE (cys), CYSTINE.

Diversity (within a species) R e f e r s t o t h e genetic variation that exists within a population (of organisms) in a species. For example, black cattle and white cattle; or both toxic and nontoxic strains/serotypes of Escherichia coliform (E. coli) bacteria. This diversity is due to one or more single-nucleotide polymorphisms (SNPs) in each individual’s genome (DNA) within the population of organisms. See also SPECIES, SINGLE-NUCLE-

OTIDE POLYMORPHISMS (SNPs), POLYMORPHISM

(GENETIC), NUCLEOTIDE, ORGANISM, STRAIN,

SEROTYPES, ESCHERICHIA COLIFORM (E. COLI),

ESCHERICHIA COLIFORM 0157:H7 (E. COLI 0157:H7).

Diversity Biotechnology Consortium A nonprofit U.S. organization formed in August of 1994 by a group of research institutions and companies. The consortium’s first president was Stuart A. Kauffman of the Santa Fe Institute. The consortium’s purpose is to further the use of molecular diversity as a tool in drug design, and in the study of mutating

© 2002 by CRC Press LLC

 

viruses. See also MOLECULAR DIVERSITY,

 

RATIONAL DRUG DESIGN, DIVERSITY ESTIMATION

 

(OF MOLECULES), MOLECULAR BIOLOGY, VIRUS,

 

MUTATION, MUTANT, SITE-DIRECTED MUTAGENE-

 

SIS (SDM), COMBINATORIAL CHEMISTRY, COMBI-

 

NATORIAL BIOLOGY.

 

Diversity Estimation (of molecules) See COM-

D

BINATORIAL CHEMISTRY.

 

DNA See DEOXYRIBONUCLEIC ACID (DNA).

 

DNA Analysis See DNA PROFILING.

 

DNA Bridges Large segments of DNA whose

 

sequence (i.e., composition) is known and

 

mapped in total. Those sequences are then

 

utilized by scientists to piece together

 

(bridging the DNA segments) and assemble

 

a (more) complete map (e.g., of an organ-

 

ism’s chromosome or genome). See also

 

DEOXYRIBONUCLEIC ACID (DNA), GENETIC MAP,

 

SEQUENCE (OF A DNA MOLECULE), CHROMOSOME,

 

GENOME, SEQUENCE MAP, SHOTGUN SEQUENCING.

 

DNA Chimera One DNA molecule composed

 

of DNA from two different species. See also

 

CHIMERA.

 

DNA Chip See BIOCHIPS, GENE EXPRESSION

 

ANALYSIS, PROTEOMICS.

 

DNA Fingerprinting See DNA PROFILING.

 

DNA Ligase An enzyme that creates a phos-

 

phodiester bond between the 3′ end of one

 

DNA segment and the 5′ end of another,

 

while they are base-paired to a template

 

strand. The enzyme seals (joins) the ends of

 

single-stranded DNA in a duplex DNA

 

chain. DNA ligase constitutes a part of the

 

DNA repair mechanism available to the cell.

 

See also NICK, LIGASE, DEOXYRIBONUCLEIC ACID

 

(DNA), GENE REPAIR (NATURAL), DUPLEX.

 

DNA Marker See MARKER (DNA MARKER).

 

DNA Methylation Refers to a DNA molecule

 

that is saturated with methyl groups (i.e.,

 

methyl submolecule groups CH3 have

 

attached themselves to the DNA molecule’s

 

“backbone” at all possible locations on that

 

DNA molecule). DNA methylation is used

 

by healthy cells to turn off certain genes

 

when those particular genes are no longer

 

needed (e.g., turn off genes involved in juve-

 

nile development after organism reaches

 

adulthood). DNA methylation (of cell genes

 

that would normally prevent inappropriate

 

cell division/proliferation) also occurs in

 

some cancers. See also DEOXYRIBONUCLEIC

ACID (DNA), METHYLATED, CELL, GENE, CANCER,

TRANSCRIPTION, GENETIC CODE, MESSENGER RNA

(mRNA), p53 GENE, TUMOR-SUPPRESSOR GENES.

DNA Microarray Initially developed by Patrick Brown during the 1980s, these microarrays enable analysis of the levels of expression of genes in an organism, or comparison of gene expression levels (e.g., between diseased and nondiseased tissues) via hybridization of messenger RNA (mRNA) to its counterpart DNA sequence, when biological samples containing DNA (e.g., in liquid) are passed over the array surface. To manufacture the DNA microarray, cellular mRNA is used to make segments of complementary DNA (cDNA) in lengths of approximately 500–5000 base pairs long, using the reverse transcriptase polymerase chain reaction (RT-PCR). These cDNA segments are then attached to a nylon or glass surface at known spots, so when hybridiza- tion-of-sample-DNA occurs, the location of the spot tells what DNA was in the sample. Another way to manufacture a type of DNA microarray is to similarly attach oligonucleotides or peptide nucleic acids of known sequence (composition) at known spots on the nylon or glass surface, and pass the biological sample containing DNA (e.g., in liquid) over that surface to identify the DNA in the sample by the spot to which it hybridizes. See also

GENE, ORGANISM, BIOCHIPS, MICROFLUIDICS,

DEOXYRIBONUCLEIC ACID (DNA), MESSENGER RNA

(mRNA), HYBRIDIZATION (MOLECULAR GENETICS),

EXPRESS, GENE EXPRESSION ANALYSIS, PROTEOM-

ICS, MICROARRAY (TESTING), OLIGONUCLEOTIDE,

NUCLEIC ACIDS, SEQUENCE (OF A DNA MOLECULE),

BIOINFORMATICS.

DNA Polymerase An enzyme that catalyzes the synthesis of DNA. The process is accomplished by catalyzing the addition of deoxyribonucleotide residues to the free 3′- hydroxyl end of a DNA chain, starting from a mixture of the appropriate triphosphorylated bases, which are dATP, dGTP, dCTP, and dTTP. This chemical reaction is reversible and, hence, DNA polymerase also functions as an exonuclease. See also ENZYME,

EXONUCLEASE, TAQ DNA POLYMERASE, DEOXY-

RIBONUCLEIC ACID (DNA), SYNTHESIZING (OF DNA

MOLECULES).

© 2002 by CRC Press LLC

DNA Probe Also called gene probe or genetic probe. Short, specific (complementary to desired gene) artificially-produced segments of DNA are used to combine with and detect the presence of specific genes (or shorter DNA segments) within a chromosome. If a DNA probe of known composition and length is mingled with pieces of DNA (genes) from a chromosome, the probe will cling to its exact counterpart in the chromosomal DNA pieces (genes), forming a stable double-stranded hybrid. The presence of this (now) “labeled” probe is detected visually or with the aid of another detection instrument. Because the composition of the DNA probes is known, scientists can riffle through a chromosome, spotting segments of DNA (i.e., genes) that seem to be linked to genetic diseases. See also MUSCULAR DYSTROPHY (MD),

PROBE, POLYMERASE CHAIN REACTION (PCR),

GENE, POLYMERASE CHAIN REACTION (PCR) TECH-

NIQUE, CHROMOSOMES, DOUBLE HELIX, DUPLEX,

H Y B R I D I Z A T I O N (M O L E C U L A R G E N E T I C S ),

HYBRIDIZATION SURFACES, DEOXYRIBONUCLEIC

ACID (DNA), HOMEOBOX, RAPID MICROBIAL

DETECTION (RMD), SOUTHERN BLOT ANALYSIS.

DNA Profiling Invented in 1985 by Alec Jeffreys, this technique is used by forensic (i.e., crime-solving) chemists to match biological evidence (e.g., a blood stain) from a crime scene to the person (e.g., the assailant) involved in that particular crime. DNA profiling involves the use of RFLP (restriction fragment length polymorphism) analysis or ASO/PCR (allele-specific oligonucleotide/polymerase chain reaction) analysis to identify the specific sequence of bases (i.e., nucleotides) in a piece of DNA taken from the biological evidence. Since the specific sequence of bases in DNA molecules is different for each individual (due to DNA polymorphism), a criminal’s DNA can be matched to that of the evidence to prove guilt or innocence. Biological evidence may include, among other things, blood, hair, nail fragments, skin, and sperm. See also DEOXY-

RIBONUCLEIC ACID (DNA), RESTRICTION FRAG-

MENT LENGTH POLYMORPHISM (RFLP) TECHNIQUE,

POLYMORPHISM (CHEMICAL), POLYMERASE CHAIN

REACTION (PCR) TECHNIQUE, ALLELE, NUCLEO-

TIDE, NUCLEIC ACIDS, OLIGOMER, GENETIC CODE,

INFORMATIONAL MOLECULES, OLIGIONUCLE-

 

OTIDE, CODON.

 

 

 

DNA Synthesis See SYNTHESIZING (OF DNA MOL-

 

ECULES).

 

 

 

DNA Typing See DNA PROFILING.

 

 

 

DNA Vaccines Products in which “naked” genes

 

(i.e., pieces of bare DNA) are used to stimulate

 

D

an immune response (e.g., either a

cellular

immune response, humoral immune response,

 

or otherwise raise antibodies against the patho-

 

gen from which the naked genes have arisen

 

or been derived). See also DEOXYRIBONUCLEIC

 

ACID (DNA), IMMUNE RESPONSE, CELLULAR IMMUNE

 

RESPONSE, HUMORAL IMMUNITY, ANTIBODY,

 

NAKEDGENE, PATHOGEN, DNA VECTOR.

 

 

DNA Vector A vehicle (such as a virus) for

 

transferring genetic information

(DNA)

 

from one cell to another. See also BACTE-

 

RIOPHAGE, RETROVIRUSES, VECTOR.

 

 

 

DNA-Dependent RNA Polymerase See

RNA

 

POLYMERASE.

 

 

 

DNA-RNA Hybrid A double helix that con-

 

sists of one chain of DNA hydrogen bonded

 

to a chain of RNA by means of complemen-

 

tary base pairs. See also HYBRIDIZATION

 

(MOLECULAR GENETICS), HYBRIDIZATION (PLANT

 

GENETICS), DOUBLE HELIX.

 

 

 

DNAse Deoxyribonuclease, an endonuclease

 

enzyme family that degrades (cuts up) DNA

 

molecules. DNase I is produced and secreted

 

by the salivary glands, intestines, liver, and

 

pancreas of animals. It has optimal activity

 

(i.e., greatest ability to cut up DNA molecules)

 

at neutral pH (neither acidic nor basic). DNase

 

II has optimal activity between pH 4.6 and 5.5

 

(i.e., in slightly acidic solutions). See also

 

ENZYME, DEOXYRIBONUCLEIC ACID (DNA), ENDO-

 

NUCLEASES, PANCREAS, ACID, BASE (GENERAL).

 

Docosahexanoic Acid (DHA) O n e

o f

t h e

 

omega-3 (n-3) highly unsaturated fatty acids (HUFA), DHA is important in the development of the human infant’s brain, spinal cord, and retina tissues. DHA aids optimal brain and nervous system development in human infants, and is required for optimal brain function throughout life. Naturally present in human breast milk and fish oil. The human body converts linolenic acid (e.g., from consumption of soybean oil) to the two highly unsaturated fatty acids (HUFA) docosahexanoic acid (DHA) and

© 2002 by CRC Press LLC

eicosapentanoic acid (EPA). Research indicates that consumption of docosahexanoic acid also helps to reduce the risk of heart disease (by lowering blood pressure) and depression (via its effect in the brain). See

also POLYUNSATURATED FATTY ACIDS (PUFA),

DFATTY ACIDS, FATTY ACIDS, UNSATURATED FATTY ACIDS, ESSENTIAL FATTY ACIDS, LINOLENIC ACID,

SOYBEAN OIL, EICOSANOIDS, EICOSAPENTANOIC ACID (EPA).HIGHLY UNSATURATED FATTY ACIDS (HUFA), N- 3

Domain (of a chromosome) May refer either to a discrete structural entity defined as a region within which supercoiling is independent of other domains, or to an extensive region, including an expressed gene that has heightened sensitivity to degradation by the enzyme DNAse I. See also GENE, EXPRESS, ENZYME.

Domain (of a protein) A discrete continuous part of the amino acid sequence that can be equated with a particular function. See also

COMBINING SITE, EPITOPE, IDIOTYPE, PROTEIN, p53

PROTEIN, MINIMIZED PROTEINS.

Dominant (gene) (gene) See also DOMINANT

ALLELE.

Dominant Allele Discovered by Gregor Mendel in the 1860s, this gene produces the same phenotype when it is heterozygous as it does when it is homozygous (i.e., trait, or protein, is expressed even if only one copy of the gene is present in the genome). See also

GENETICS, RECESSIVE ALLELE, HETEROZYGOTE,

HOMOZYGOUS, PHENOTYPE, GENOTYPE, GENOME.

DON Abbreviation for the mycotoxin deoxynivalenol produced by Fusarium fungi DON. Also known as “vomitoxin,” because it can cause some animals to vomit if they consume it. See also MYCOTOXINS, DEOXY-

NIVALENOL, FUSARIUM, FUNGUS, VOMITOXIN.

Donor Junction The junction between the left 5′ end of an exon and the right 3′ end of an intron. See also EXON, INTRON.

Double Helix The natural coiled conformation of two complementary, antiparallel DNA chains. This structure was first put forward by Watson and Crick in 1953. See also

DEOXYRIBONUCLEIC ACID (DNA).

Down Promoter Mutations Those mutations that decrease the frequency of initiation of transcription. Down promoter mutations lead to the production of less mRNA than is the case in the nonmutated state. See also mRNA,

MUTATION, TRANSCRIPTION, DOWN REGULATING.

Down Regulating Phrase referring to regulatory sequences, chemical compounds (e.g., transcription factors), mutations (e.g., down promoter mutations), etc. that cause a given gene to express less of the protein that it normally codes for. See also GENE, REGULATORY

SEQUENCE, TRANSCRIPTION FACTORS, DOWN PRO-

MOTER MUTATIONS, PROTEIN, CODING SEQUENCE.

Drosophila The name of a type of fly (Drosophila melanogaster) that reproduces rapidly, and that is commonly utilized in genetics experiments due to its short life cycle (14 days) and simple genome (four chromosome pairs). Because of these factors, a large base of knowledge about Drosophila genetics has been accumulated by the world’s scientific community. For example, of the nearly 300 “disease-causing” genes in the human genome, more than half have an analogous gene in the Drosophila genome. Drosophila was one of the first organisms to have its entire genome sequenced by man.

See also GENETICS, GENOME, GENETIC CODE,

GENETIC MAP, CHROMOSOMES, COLD HARDENING,

HOMEOBOX, SEQUENCING (OF DNA MOLECULES),

GENE.

Duchenne Muscular Dystrophy (DMD)

Gene See MUSCULAR DYSTROPHY (MD).

Duplex The double-helical structure of DNA (deoxyribonucleic acid). See also DOUBLE

HELIX, DEOXYRIBONUCLEIC ACID (DNA).

© 2002 by CRC Press LLC