Добавил:
kiopkiopkiop18@yandex.ru t.me/Prokururor I Вовсе не секретарь, но почту проверяю Опубликованный материал нарушает ваши авторские права? Сообщите нам.
Вуз: Предмет: Файл:
Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_5366_Библиотеки_им_академика_М_И_Перельмана.pdf
Скачиваний:
0
Добавлен:
02.09.2026
Размер:
21 Мб
Скачать
160
R. Pranomphon etal.
fusions of receptors with Fc domains, and more complex glycans on mAbs emerge, new challenges may arise. For example, while mAbs are generally not sialylated, new studies indicate that increased sialyation increases half-life, impacts stability, and may reduce dosing frequency [138, 139]. These new demands may require alternative hosts including human cell lines or highly engineered lower eukaryotes such as yeast or modications to CHO using targeted gene and process manipula­tion to maximize their post-translational potential.

References

1. Hossler P, Khattak SF, Li ZJ (2009) Optimal and consistent protein glycosylation in mam­malian cell culture. Glycobiology 19(9):936–949. https://doi.org/10.1093/glycob/cwp079
2. Wurm F (2004) Production of recombinant protein therapeutics in cultivated mammalian cells. Nat Biotechnol 22:1393–1398. https://doi.org/10.1038/nbt1026
3. Gupta SK, Shukla P (2018) Glycosylation control technologies for recombinant therapeu­tic proteins. Appl Microbiol Biotechnol 102(24):10457–10468. https://doi.org/10.1007/
s00253- 018- 9430- 6
4. Dalton AC, Barton WA (2014) Over-expression of secreted proteins from mammalian cell lines. Protein Sci 23(5):517–525. https://doi.org/10.1002/pro.2439
5. Walsh G, Jefferis R (2006) Post-translational modications in the context of therapeutic pro­teins. Nat Biotechnol 24(10):1241–1252. https://doi.org/10.1038/nbt1252
6. Krasnova L, Wong C-H (2016) Exploring human glycosylation for better therapies. Mol Asp Med 51:125–143. https://doi.org/10.1016/j.mam.2016.05.003
7. Liu L (2015) Antibody glycosylation and its impact on the pharmacokinetics and pharmaco­dynamics of monoclonal antibodies and fc-fusion proteins. J Pharm Sci 104(6):1866–1884.
https://doi.org/10.1002/jps.24444
8. Steentoft C, Bennett EP, Schjoldager KT-BG, Vakhrushev SY, Wandall HH, Clausen H (2014) Precision genome editing: a small revolution for glycobiology. Glycobiology 24(8):663–680.
https://doi.org/10.1093/glycob/cwu046
9. Andersen DC, Bridges T, Gawlitzek M, Hoy C (2000) Multiple cell culture factors can affect the glycosylation of Asn-184 in CHO-produced tissue-type plasminogen activator. Biotechnol Bioeng 70(1):25–31. https://doi.org/10.1002/1097- 0290(20001005)70:1<25::
aid- bit4>3.0.co;2- q
10. Liu B, Spearman M, Doering J, Lattova E, Perreault H, Butler M (2014) The availability of glucose to CHO cells affects the intracellular lipid-linked oligosaccharide distribution, site occupancy and the N-glycosylation prole of a monoclonal antibody. J Biotechnol 170:17–27. https://doi.org/10.1016/j.jbiotec.2013.11.007
11. Spahn PN, Lewis NE (2014) Systems glycobiology for glycoengineering. Curr Opin Biotechnol 30:218–224. https://doi.org/10.1016/j.copbio.2014.08.004
12. Stolfa G, Smonskey MT, Boniface R, Hachmann A-B, Gulde P, Joshi AD, Pierce AP, Jacobia SJ, Campbell A (2018) CHO-omics review: the impact of current and emerging technolo­gies on Chinese hamster ovary based bioproduction. Biotechnol J 13(3):1700227. https://doi.
org/10.1002/biot.201700227
13. Sha S, Agarabi C, Brorson K, Lee D-Y, Yoon S (2016) N-glycosylation design and con­trol of therapeutic monoclonal antibodies. Trends Biotechnol 34(10):835–846. https://doi.
org/10.1016/j.tibtech.2016.02.013
14. Hossler P (2012) Protein glycosylation control in mammalian cell culture: past precedents and contemporary prospects. Adv Biochem Eng Biotechnol 127:187–219. https://doi.
org/10.1007/10_2011_113
6 Metabolic and Process Engineering to Control Glycan Structures…
15. Zhou J, Gao H, Xie W, Li Y (2020) Bovine serum albumin affects N-glycoforms of murine IgG monoclonal antibody puried from hybridoma supernatants. Appl Microbiol Biotechnol 104(4):1583–1594. https://doi.org/10.1007/s00253- 019- 10309- z
16. Dordal MS, Wang FF, Goldwasser E (1985) The role of carbohydrate in erythropoietin action*. Endocrinology 116(6):2293–2299. https://doi.org/10.1210/endo- 116- 6- 2293
17. Nose M, Wigzell H (1983) Biological signicance of carbohydrate chains on monoclonal anti­bodies. Proc Natl Acad Sci USA 80(21):6632–6636. https://doi.org/10.1073/pnas.80.21.6632
18. Thacker BE, Sharfstein ST (2018) Metabolic engineering of mammalian cells to produce heparan sulfates. Emerg Top Life Sci 2(3):443–452. https://doi.org/10.1042/ETLS20180007
19. Schiestl M, Li J, Abas A, Vallin A, Millband J, Gao K, Joung J, Pluschkell S, Go T, Kang H-N (2014) The role of the quality assessment in the determination of overall biosimilar­ity: a simulated case study exercise. Biologicals 42(2):128–132. https://doi.org/10.1016/j.
biologicals.2013.11.009
20. Rathore AS, Winkle H (2009) Quality by design for biopharmaceuticals. Nat Biotechnol 27(1):26–34. https://doi.org/10.1038/nbt0109- 26
21. Lipsitz YY, Timmins NE, Zandstra PW (2016) Quality cell therapy manufacturing by design. Nat Biotechnol 34(4):393–400. https://doi.org/10.1038/nbt.3525
22. Kirchhoff CF, Wang XM, Conlon HD, Anderson S, Ryan AM, Bose A (2017) Biosimilars: key regulatory considerations and similarity assessment tools. Biotechnol Bioeng 114(12):2696–2705. https://doi.org/10.1002/bit.26438
23. Kesik-Brodacka M (2018) Progress in biopharmaceutical development. Biotechnol Appl Biochem 65(3):306–322. https://doi.org/10.1002/bab.1617
24. Dahodwala H, Sharfstein ST (2017) Biosimilars: imitation games. ACS Med Chem Lett 8(7):690–693. https://doi.org/10.1021/acsmedchemlett.7b00199
25. Fisher AC, Kamga MH, Agarabi C, Brorson K, Lee SL, Yoon S (2019) The current scientic and regulatory landscape in advancing integrated continuous biopharmaceutical manufactur­ing. Trends Biotechnol 37(3):253–267. https://doi.org/10.1016/j.tibtech.2018.08.008
26. Rathore AS (2009) Roadmap for implementation of quality by design (QbD) for bio­technology products. Trends Biotechnol 27(9):546–553. https://doi.org/10.1016/j.
tibtech.2009.06.006
27. Rathore AS (2016) Quality by design (QbD)-based process development for purica­tion of a biotherapeutic. Trends Biotechnol 34(5):358–370. https://doi.org/10.1016/j.
tibtech.2016.01.003
28. Butler M, Meneses-Acosta A (2012) Recent advances in technology supporting biophar­maceutical production from mammalian cells. Appl Microbiol Biotechnol 96(4):885–894.
https://doi.org/10.1007/s00253- 012- 4451- z
29. Wang Q, Yin B, Chung CY, Betenbaugh MJ (2017) Glycoengineering of CHO cells to improve product quality. Methods Mol Biol (Clifton, NJ) 1603:25–44. https://doi.
org/10.1007/978- 1- 4939- 6972- 2_2
30. Mohanty S, Chaudhary BP, Zoetewey D (2020) Structural insight into the mechanism of N-linked glycosylation by oligosaccharyltransferase. Biomol Ther 10(4). https://doi.
org/10.3390/biom10040624
31. Stanley P, Taniguchi N, Aebi M (2015) N-Glycans. In: Varki A, Cummings RD etal (eds) Essentials of glycobiology. Cold Spring Harbor (NY), pp99–111. https://doi.org/10.1101/
glycobiology.3e.009
32. Araki K, Nagata K (2011) Protein folding and quality control in the ER.Cold Spring Harb Perspect Biol 3(11):a007526. https://doi.org/10.1101/cshperspect.a007526
33. Wang Q, Stuczynski M, Gao Y, Betenbaugh MJ (2015) Strategies for engineering pro­tein N-glycosylation pathways in mammalian cells. Methods Mol Biol (Clifton, NJ) 1321:287–305. https://doi.org/10.1007/978- 1- 4939- 2760- 9_20
34. Huang HH, Hassinen A, Sundaram S, Spiess AN, Kellokumpu S, Stanley P (2015) GnT1IP-L specically inhibits MGAT1 in the Golgi via its luminal domain. elife 4. https://doi.
org/10.7554/eLife.08916
161
162
35. Carraway KL, Hull SR (1989) O-glycosylation pathway for mucin-type glycoproteins. BioEssays 10(4):117–121. https://doi.org/10.1002/bies.950100406
36. Hart GW, Housley MP, Slawson C (2007) Cycling of O-linked β-N-acetylglucosamine on nucleocytoplasmic proteins. Nature 446(7139):1017–1022. https://doi.org/10.1038/
nature05815
37. Lalonde M-E, Durocher Y (2017) Therapeutic glycoprotein production in mammalian cells. J Biotechnol 251:128–140. https://doi.org/10.1016/j.jbiotec.2017.04.028
38. Tejwani V, Andersen MR, Nam JH, Sharfstein ST (2018) Glycoengineering in CHO cells: advances in systems biology. Biotechnol J 13(3):e1700234. https://doi.org/10.1002/
biot.201700234
39. Mimura Y, Katoh T, Saldova R, O’Flaherty R, Izumi T, Mimura-Kimura Y, Utsunomiya T, Mizukami Y, Yamamoto K, Matsumoto T, Rudd PM (2018) Glycosylation engineering of therapeutic IgG antibodies: challenges for the safety, functionality and efcacy. Protein Cell 9(1):47–62. https://doi.org/10.1007/s13238- 017- 0433- 3
40. Pacis E, Yu M, Autsen J, Bayer R, Li F (2011) Effects of cell culture conditions on anti­body N-linked glycosylation– what affects high mannose 5 glycoform. Biotechnol Bioeng 108(10):2348–2358. https://doi.org/10.1002/bit.23200
41. Alessandri L, Ouellette D, Acquah A, Rieser M, Leblond D, Saltarelli M, Radziejewski C, Fujimori T, Correia I (2012) Increased serum clearance of oligomannose species present on a human IgG1 molecule. MAbs 4:509–520. https://doi.org/10.4161/mabs.20450
42. Goetze AM, Liu YD, Zhang Z, Shah B, Lee E, Bondarenko PV, Flynn GC (2011) High­mannose glycans on the Fc region of therapeutic IgG antibodies increase serum clearance in humans. Glycobiology 21(7):949–959. https://doi.org/10.1093/glycob/cwr027
43. Yu M, Brown D, Reed C, Chung S, Lutman J, Stefanich E, Wong A, Stephan J-P, Bayer R (2012) Production, characterization, and pharmacokinetic properties of antibodies with N-linked mannose-5 glycans. MAbs 4(4):475–487. https://doi.org/10.4161/mabs.20737
44. Seo N, Polozova A, Zhang M, Yates Z, Cao S, Li H, Kuhns S, Maher G, McBride H, Liu J (2018) Analytical and functional similarity of Amgen biosimilar ABP 215 to bevacizumab. MAbs 10:1–58. https://doi.org/10.1080/19420862.2018.1452580
45. Miyoshi E, Noda K, Yamaguchi Y, Inoue S, Ikeda Y, Wang W, Ko JH, Uozumi N, Li W, Taniguchi N (1999) The alpha1-6-fucosyltransferase gene and its biological signicance. Biochim Biophys Acta 1473(1):9–20. https://doi.org/10.1016/s0304- 4165(99)00166- x
46. Kamoda S, Nomura C, Kinoshita M, Nishiura S, Ishikawa R, Kakehi K, Kawasaki N, Hayakawa T (2004) Proling analysis of oligosaccharides in antibody pharmaceuticals by capillary electrophoresis. J Chromatogr A 1050:211–216. https://doi.org/10.1016/
s0021- 9673(04)01399- 8
47. Imai-Nishiya H, Mori K, Inoue M, Wakitani M, Iida S, Shitara K, Satoh M (2007) Double knockdown of alpha1,6-fucosyltransferase (FUT8) and GDP-mannose 4,6-dehydratase (GMD) in antibody-producing cells: a new strategy for generating fully non- fucosylated therapeutic antibodies with enhanced ADCC.BMC Biotechnol 7:84. https://doi.org/10.118
6/1472- 6750- 7- 84
48. Shinkawa T, Nakamura K, Yamane N, Shoji-Hosaka E, Kanda Y, Sakurada M, Anazawa H, Satoh M, Yamasaki M, Hanai N, Shitara K (2003) The absence of fucose but not the presence of galactose or bisecting N-acetylglucosamine of human IgG1 complex-type oligosaccha­rides shows the critical role of enhancing antibody-dependent cellular cytotoxicity. J Biol Chem 278:3466–3473. https://doi.org/10.1074/jbc.M210665200
49. Natsume A, Wakitani M, Yamane-Ohnuki N, Shoji-Hosaka E, Niwa R, Uchida K, Satoh M, Shitara K (2005) Fucose removal from complex-type oligosaccharide enhances the antibody­dependent cellular cytotoxicity of single-gene-encoded antibody comprising a single-chain antibody linked the antibody constant region. J Immunol Methods 306(1):93–103. https://doi.
org/10.1016/j.jim.2005.07.025
50. Ferrara C, Grau S, Jäger C, Sondermann P, Brünker P, Waldhauer I, Hennig M, Ruf A, Rufer A, Stihle M, Umana P, Benz J (2011) Unique carbohydrate-carbohydrate interactions are
R. Pranomphon etal.
6 Metabolic and Process Engineering to Control Glycan Structures…
required for high afnity binding between Fc RIII and antibodies lacking core fucose. Proc Natl Acad Sci USA 108:12669–12674. https://doi.org/10.1073/pnas.1108455108
51. Shields RL, Lai J, Keck R, O’Connell LY, Hong K, Meng YG, Weikert SH, Presta LG (2002) Lack of fucose on human IgG1 N-linked oligosaccharide improves binding to human Fcgamma RIII and antibody-dependent cellular toxicity. J Biol Chem 277(30):26733–26740.
https://doi.org/10.1074/jbc.M202069200
52. Reusch D, Tejada ML (2015) Fc glycans of therapeutic antibodies as critical quality attri­butes. Glycobiology 25(12):1325–1334. https://doi.org/10.1093/glycob/cwv065
53. Visser J, Feuerstein I, Stangler T, Schmiederer T, Fritsch C, Schiestl M (2013) Physicochemical and functional comparability between the proposed biosimilar rituximab GP2013 and origi­nator rituximab. BioDrugs 27. https://doi.org/10.1007/s40259- 013- 0036- 3
54. Hodoniczky J, Zheng Y, James D (2005) Control of recombinant monoclonal antibody effec­tor functions by Fc N-glycan remodeling invitro. Biotechnol Prog 21:1644–1652. https://doi.
org/10.1021/bp050228w
55. Peschke B, Keller CW, Weber P, Quast I, Lünemann JD (2017) Fc-galactosylation of human immunoglobulin gamma isotypes improves C1q binding and enhances complement- dependent cytotoxicity. Front Immunol 8:646–646. https://doi.org/10.3389/mmu.2017.00646
56. Raju T, Jordan R (2012) Galactosylation variations in marketed therapeutic antibodies. MAbs 4:385–391. https://doi.org/10.4161/mabs.19868
57. Sha S, Yoon S (2019) An investigation of nucleotide sugar dynamics under the galactose sup­plementation in CHO cell culture. Process Biochem 81:165–174. https://doi.org/10.1016/j.
procbio.2019.03.020
58. Arnold J, Wormald M, Sim R, Rudd P, Dwek R (2007) The impact of glycosylation on the biological function and structure of human immunoglobulins. Annu Rev Immunol 25:21–50.
https://doi.org/10.1146/annurev.immunol.25.022106.141702
59. Byrne B, Donohoe G, O’Kennedy R (2007) Sialic acids: carbohydrate moieties that inuence the biological and physical properties of biopharmaceutical proteins and living cells. Drug Discov Today 12:319–326. https://doi.org/10.1016/j.drudis.2007.02.010
60. Fukuta K, Yokomatsu T, Abe R, Asanagi M, Makino T (2000) Genetic engineering of CHO cells producing human interferon-γ by transfection of sialyltransferases. Glycoconj J 17(12):895–904. https://doi.org/10.1023/a:1010977431061
61. Schjoldager KT, Narimatsu Y, Joshi HJ, Clausen H (2020) Global view of human protein glycosylation pathways and functions. Nat Rev Mol Cell Biol 21(12):729–749. https://doi.
org/10.1038/s41580- 020- 00294- x
62. Costa AR, Rodrigues ME, Henriques M, Oliveira R, Azeredo J (2014) Glycosylation: impact, control and improvement during therapeutic protein production. Crit Rev Biotechnol 34(4):281–299. https://doi.org/10.3109/07388551.2013.793649
63. Goh JB, Ng SK (2018) Impact of host cell line choice on glycan prole. Crit Rev Biotechnol 38(6):851–867. https://doi.org/10.1080/07388551.2017.1416577
64. Yeo JHM, Ho SCL, Mariati M, Koh E, Tay SJ, Woen S, Zhang P, Yang Y (2017) Optimized selection marker and CHO host cell combinations for generating high monoclonal antibody producing cell lines. Biotechnol J 12(12):1700175. https://doi.org/10.1002/biot.201700175
65. Baik JY, Gasimli L, Yang B, Datta P, Zhang F, Glass CA, Esko JD, Linhardt RJ, Sharfstein ST (2012) Metabolic engineering of Chinese hamster ovary cells: towards a bioengineered heparin. Metab Eng 14(2):81–90. https://doi.org/10.1016/j.ymben.2012.01.008
66. Thacker BE, Thorne KJ, Cartwright C, Park J, Glass K, Chea A, Kellman BP, Lewis NE, Wang Z, Di Nardo A,Sharfstein ST, Jeske W, Walenga J, Hogwood J, Gray E, Mulloy B, Esko JD, Glass CA, (2022) Multiplex genome editing of mammalian cells for producing recombinant heparin. Metab Eng 70:155–165 https://doi.org/10.1016/j.ymben.2022.01.002
67. Walsh G (2010) Post-translational modications of protein biopharmaceuticals. Drug Discov Today 15(17–18):773–780. https://doi.org/10.1016/j.drudis.2010.06.009
68. Yang Z, Wang S, Halim A, Schulz MA, Frodin M, Rahman SH, Vester-Christensen MB, Behrens C, Kristensen C, Vakhrushev SY, Bennett EP, Wandall HH, Clausen H (2015)
163
164
Engineered CHO cells for production of diverse, homogeneous glycoproteins. Nat Biotechnol 33(8):842–844. https://doi.org/10.1038/nbt.3280
69. Angata T, Varki A (2002) Chemical diversity in the sialic acids and related alpha-keto acids: an evolutionary perspective. Chem Rev 102(2):439–469
70. Lee EU, Roth J, Paulson JC (1989) Alteration of terminal glycosylation sequences on N-linked oligosaccharides of Chinese hamster ovary cells by expression of beta-galactoside alpha 2,6-sialyltransferase. J Biol Chem 264(23):13848–13855
71. Li Y, Chen X (2012) Sialic acid metabolism and sialyltransferases: natural functions and applications. Appl Microbiol Biotechnol 94(4):887–905. https://doi.org/10.1007/
s00253- 012- 4040- 1
72. Takeuchi M, Takasaki S, Miyazaki H, Kato T, Hoshi S, Kochibe N, Kobata A (1988) Comparative study of the asparagine-linked sugar chains of human erythropoietins puried from urine and the culture medium of recombinant Chinese hamster ovary cells. J Biol Chem 263(8):3657–3663. https://doi.org/10.1016/s0021- 9258(18)68975- 6
73. Ashwell G, Harford J (1982) Carbohydrate-specic receptors of the liver. Annu Rev Biochem 51:531–554. https://doi.org/10.1146/annurev.bi.51.070182.002531
74. Zhang M, Koskie K, Ross JS, Kayser KJ, Caple MV (2010) Enhancing glycoprotein sialylation by targeted gene silencing in mammalian cells. Biotechnol Bioeng 105(6):1094–1105.
https://doi.org/10.1002/bit.22633
75. Pearce OM, Laubli H, Verhagen A, Secrest P, Zhang J, Varki NM, Crocker PR, Bui JD, Varki A (2014) Inverse hormesis of cancer growth mediated by narrow ranges of tumor­directed antibodies. Proc Natl Acad Sci USA 111(16):5998–6003. https://doi.org/10.1073/
pnas.1209067111
76. Padler-Karavani V, Yu H, Cao H, Chokhawala H, Karp F, Varki N, Chen X, Varki A (2008) Diversity in specicity, abundance, and composition of anti-Neu5Gc antibodies in nor­mal humans: potential implications for disease. Glycobiology 18(10):818–830. https://doi.
org/10.1093/glycob/cwn072
77. Hedlund M, Padler-Karavani V, Varki NM, Varki A (2008) Evidence for a human-specic mechanism for diet and antibody-mediated inammation in carcinoma progression. Proc Natl Acad Sci USA 105(48):18936–18941. https://doi.org/10.1073/pnas.0803943105
78. Noguchi A, Mukuria CJ, Suzuki E, Naiki M (1995) Immunogenicity of N-glycolylneuraminic acid-containing carbohydrate chains of recombinant human erythropoietin expressed in Chinese hamster ovary cells. J Biochem 117(1):59–62. https://doi.org/10.1093/oxfordjourn-
als.jbchem.a124721
79. Yu C, Gao K, Zhu L, Wang W, Wang L, Zhang F, Liu C, Li M, Wormald MR, Rudd PM, Wang J (2016) At least two Fc Neu5Gc residues of monoclonal antibodies are required for binding to anti-Neu5Gc antibody. Sci Rep 6(1):20029. https://doi.org/10.1038/srep20029
80. Fischer S, Mathias S, Stadermann A, Yang S, Schmieder V, Zeh N, Schmidt N, Richter P, Wright S, Zimmermann E, Ley Y, van der Meer J, Hartsch T, Bernloehr C, Otte K, Bradl H, Gamer M, Schulz P.Loss of a newly discovered microRNA in Chinese hamster ovary cells leads to upregulation of NGNA sialylation on monoclonal antibodies. Biotechn Bioeng.
https://doi.org/10.1002/bit.28015
81. Kurogochi M, Mori M, Osumi K, Tojino M, Sugawara S, Takashima S, Hirose Y, Tsukimura W, Mizuno M, Amano J, Matsuda A, Tomita M, Takayanagi A, Shoda S, Shirai T (2015) Glycoengineered monoclonal antibodies with homogeneous glycan (M3, G0, G2, and A2) using a chemoenzymatic approach have different afnities for FcgammaRIIIa and variable antibody-dependent cellular cytotoxicity activities. PLoS One 10(7):e0132848. https://doi.
org/10.1371/journal.pone.0132848
82. Anthony RM, Nimmerjahn F, Ashline DJ, Reinhold VN, Paulson JC, Ravetch JV (2008) Recapitulation of IVIG anti-inammatory activity with a recombinant IgG Fc. Science 320(5874):373–376. https://doi.org/10.1126/science.1154315
83. Lin CW, Tsai MH, Li ST, Tsai TI, Chu KC, Liu YC, Lai MY, Wu CY, Tseng YC, Shivatare SS, Wang CH, Chao P, Wang SY, Shih HW, Zeng YF, You TH, Liao JY, Tu YC, Lin YS, Chuang
R. Pranomphon etal.
6 Metabolic and Process Engineering to Control Glycan Structures…
HY, Chen CL, Tsai CS, Huang CC, Lin NH, Ma C, Wu CY, Wong CH (2015) A common glycan structure on immunoglobulin G for enhancement of effector functions. Proc Natl Acad Sci USA 112(34):10611–10616. https://doi.org/10.1073/pnas.1513456112
84. Kaneko Y, Nimmerjahn F, Ravetch JV (2006) Anti-inammatory activity of immunoglob­ulin G resulting from Fc sialylation. Science 313(5787):670–673. https://doi.org/10.1126/
science.1129594
85. Raymond C, Robotham A, Spearman M, Butler M, Kelly J, Durocher Y (2015) Production of α2,6-sialylated IgG1in CHO cells. mAbs:7. https://doi.org/10.1080/19420862.2015.102921
5
86. Jeong YT, Choi O, Lim HR, Son YD, Kim HJ, Kim JH (2008) Enhanced sialylation of recombinant erythropoietin in CHO cells by human glycosyltransferase expression. J Microbiol Biotechnol 18(12):1945–1952
87. Varki A, Schauer R (2009) Sialic Acids. In: Varki A, Cummings RD, Esko JD etal (eds) Essentials of glycobiology. Cold Spring Harbor Laboratory Press, Cold Spring Harbor
88. Wong NS, Yap MG, Wang DI (2006) Enhancing recombinant glycoprotein sialylation through CMP-sialic acid transporter over expression in Chinese hamster ovary cells. Biotechnol Bioeng 93(5):1005–1016. https://doi.org/10.1002/bit.20815
89. Gu X, Wang DI (1998) Improvement of interferon-gamma sialylation in Chinese hamster ovary cell culture by feeding of N-acetylmannosamine. Biotechnol Bioeng 58(6):642–648
90. Yin B, Wang Q, Chung CY, Bhattacharya R, Ren X, Tang J, Yarema KJ, Betenbaugh MJ (2017) A novel sugar analog enhances sialic acid production and biotherapeutic sialylation in CHO cells. Biotechnol Bioeng 114(8):1899–1902. https://doi.org/10.1002/bit.26291
91. Jeong YT, Choi O, Son YD, Park SY, Kim JH (2009) Enhanced sialylation of recombinant erythropoietin in genetically engineered Chinese-hamster ovary cells. Biotechnol Appl Biochem 52(Pt 4):283–291. https://doi.org/10.1042/ba20080044
92. Son YD, Jeong YT, Park SY, Kim JH (2011) Enhanced sialylation of recombinant human erythropoietin in Chinese hamster ovary cells by combinatorial engineering of selected genes. Glycobiology 21(8):1019–1028. https://doi.org/10.1093/glycob/cwr034
93. Marx N, Grünwald-Gruber C, Bydlinski N, Dhiman H, Ngoc Nguyen L, Klanert G, Borth N (2018) CRISPR-based targeted epigenetic editing enables gene expression modulation of the silenced beta-galactoside alpha-2,6-sialyltransferase 1 in CHO cells. Biotechnol J 13(10):1700217. https://doi.org/10.1002/biot.201700217
94. Monti E, Preti A, Venerando B, Borsani G (2002) Recent development in mammalian siali­dase molecular biology. Neurochem Res 27(7–8):649–663
95. Seyrantepe V, Landry K, Trudel S, Hassan JA, Morales CR, Pshezhetsky AV (2004) Neu4, a novel human lysosomal lumen sialidase, confers normal phenotype to sialidosis and galacto­sialidosis cells. J Biol Chem 279(35):37021–37029. https://doi.org/10.1074/jbc.M404531200
96. Kakugawa Y, Wada T, Yamaguchi K, Yamanami H, Ouchi K, Sato I, Miyagi T (2002) Up-regulation of plasma membrane-associated ganglioside sialidase (Neu3) in human colon cancer and its involvement in apoptosis suppression. Proc Natl Acad Sci USA 99(16):10718–10723. https://doi.org/10.1073/pnas.152597199
97. Hinek A, Pshezhetsky AV, von Itzstein M, Starcher B (2006) Lysosomal sialidase (neuramin­idase- 1) is targeted to the cell surface in a multiprotein complex that facilitates elastic ber assembly. J Biol Chem 281(6):3698–3710. https://doi.org/10.1074/jbc.M508736200
98. Gramer MJ (2014) Product quality considerations for mammalian cell culture process development and manufacturing. Adv Biochem Eng Biotechnol 139:123–166. https://doi.
org/10.1007/10_2013_214
99. Ferrari J, Gunson J, Lofgren J, Krummen L, Warner TG (1998) Chinese hamster ovary cells with constitutively expressed sialidase antisense RNA produce recombinant DNase in batch culture with increased sialic acid. Biotechnol Bioeng 60(5):589–595
100. Krapp S, Mimura Y, Jefferis R, Huber R, Sondermann P (2003) Structural analysis of human IgG-Fc glycoforms reveals a correlation between glycosylation and structural integrity. J Mol Biol 325(5):979–989
165
166
101. Suzuki E, Niwa R, Saji S, Muta M, Hirose M, Iida S, Shiotsu Y, Satoh M, Shitara K, Kondo M, Toi M (2007) A nonfucosylated anti-HER2 antibody augments antibody-dependent cellular cytotoxicity in breast cancer patients. Clin Cancer Res 13(6):1875–1882. https://doi.
org/10.1158/1078- 0432.ccr- 06- 1335
102. Junttila TT, Parsons K, Olsson C, Lu Y, Xin Y, Theriault J, Crocker L, Pabonan O, Baginski T, Meng G, Totpal K, Kelley RF, Sliwkowski MX (2010) Superior invivo efcacy of afu­cosylated trastuzumab in the treatment of HER2-amplied breast cancer. Cancer Res 70(11):4481–4489. https://doi.org/10.1158/0008- 5472.can- 09- 3704
103. Becker DJ, Lowe JB (2003) Fucose: biosynthesis and biological function in mammals. Glycobiology 13(7):41r–53r. https://doi.org/10.1093/glycob/cwg054
104. Malphettes L, Freyvert Y, Chang J, Liu PQ, Chan E, Miller JC, Zhou Z, Nguyen T, Tsai C, Snowden AW, Collingwood TN, Gregory PD, Cost GJ (2010) Highly efcient deletion of FUT8 in CHO cell lines using zinc-nger nucleases yields cells that produce completely nonfucosylated antibodies. Biotechnol Bioeng 106(5):774–783. https://doi.org/10.1002/
bit.22751
105. Yamane-Ohnuki N, Kinoshita S, Inoue-Urakubo M, Kusunoki M, Iida S, Nakano R, Wakitani M, Niwa R, Sakurada M, Uchida K, Shitara K, Satoh M (2004) Establishment of FUT8 knockout Chinese hamster ovary cells: an ideal host cell line for producing completely defu­cosylated antibodies with enhanced antibody-dependent cellular cytotoxicity. Biotechnol Bioeng 87(5):614–622. https://doi.org/10.1002/bit.20151
106. Chan KF, Shahreel W, Wan C, Teo G, Hayati N, Tay SJ, Tong WH, Yang Y, Rudd PM, Zhang P, Song Z (2016) Inactivation of GDP-fucose transporter gene (Slc35c1) in CHO cells by ZFNs, TALENs and CRISPR-Cas9 for production of fucose-free antibodies. Biotechnol J 11(3):399–414. https://doi.org/10.1002/biot.201500331
107. Ferrara C, Brunker P, Suter T, Moser S, Puntener U, Umana P (2006) Modulation of therapeutic antibody effector functions by glycosylation engineering: inuence of Golgi enzyme localiza­tion domain and co-expression of heterologous beta1, 4-N-acetylglucosaminyltransferase III and Golgi alpha-mannosidase II.Biotechnol Bioeng 93(5):851–861. https://doi.org/10.1002/
bit.20777
108. Schachter H (1986) Biosynthetic controls that determine the branching and microheterogene­ity of protein-bound oligosaccharides. Biochem Cell Biol = Biochimie et biologie cellulaire 64(3):163–181
109. Schuster M, Umana P, Ferrara C, Brunker P, Gerdes C, Waxenecker G, Wiederkum S, Schwager C, Loibner H, Himmler G, Mudde GC (2005) Improved effector functions of a therapeutic monoclonal Lewis Y-specic antibody by glycoform engineering. Cancer Res 65(17):7934–7941. https://doi.org/10.1158/0008- 5472.can- 04- 4212
110. Abdel Rahman AM, Ryczko M, Nakano M, Pawling J, Rodrigues T, Johswich A, Taniguchi N, Dennis JW (2015) Golgi N-glycan branching N-acetylglucosaminyltransferases I, V and VI promote nutrient uptake and metabolism. Glycobiology 25(2):225–240. https://doi.
org/10.1093/glycob/cwu105
111. Fukuta K, Abe R, Yokomatsu T, Kono N, Asanagi M, Omae F, Minowa MT, Takeuchi M, Makino T (2000) Remodeling of sugar chain structures of human interferon-gamma. Glycobiology 10(4):421–430
112. Yin B, Gao Y, Chung CY, Yang S, Blake E, Stuczynski MC, Tang J, Kildegaard HF, Andersen MR, Zhang H, Betenbaugh MJ (2015) Glycoengineering of Chinese hamster ovary cells for enhanced erythropoietin N-glycan branching and sialylation. Biotechnol Bioeng 112(11):2343–2351. https://doi.org/10.1002/bit.25650
113. Mellahi K, Brochu D, Gilbert M, Perrier M, Ansorge S, Durocher Y, Henry O (2019) Assessment of fed-batch cultivation strategies for an inducible CHO cell line. J Biotechnol 298:45–56. https://doi.org/10.1016/j.jbiotec.2019.04.005
114. Mellahi K, Cambay F, Brochu D, Gilbert M, Perrier M, Ansorge S, Durocher Y, Henry O (2019) Process development for an inducible rituximab-expressing Chinese hamster ovary cell line. Biotechnol Prog 35(1):e2742. https://doi.org/10.1002/btpr.2742
R. Pranomphon etal.
6 Metabolic and Process Engineering to Control Glycan Structures…
115. McHugh K, Xu J, Aron K, Borys M, Li ZJ (2020) Effective temperature shift strategy devel­opment and scale conrmation for simultaneous optimization of protein productivity and quality in Chinese hamster ovary cells. Biotechnol Prog. https://doi.org/10.1002/btpr.2959
116. Ivarsson M, Villiger TK, Morbidelli M, Soos M (2014) Evaluating the impact of cell cul­ture process parameters on monoclonal antibody N-glycosylation. J Biotechnol 188:88–96.
https://doi.org/10.1016/j.jbiotec.2014.08.026
117. Seo J, Kim Y, Cho J, Baek E, Lee G (2013) Effect of culture pH on recombinant antibody production by a new human cell line, F2N78, grown in suspension at 33.0 C and 37.0 C.Appl Microbiol Biotechnol 97. https://doi.org/10.1007/s00253- 013- 4849- 2
118. Jiang R, Chen H, Xu S (2018) pH excursions impact CHO cell culture performance and antibody N-linked glycosylation. Bioprocess Biosyst Eng 41(12):1731–1741. https://doi.
org/10.1007/s00449- 018- 1996- y
119. Zheng C, Zhuang C, Chen Y, Fu Q, Qian H, Wang Y, Qin J, Wu X, Qi N (2018) Improved process robustness, product quality and biological efcacy of an anti-CD52 monoclonal antibody upon pH shift in Chinese hamster ovary cell perfusion culture. Process Biochem 65:123–129. https://doi.org/10.1016/j.procbio.2017.11.013
120. Reinhart D, Damjanovic L, Kaisermayer C, Sommeregger W, Gili A, Gasselhuber B, Castan A, Mayrhofer P, Grunwald-Gruber C, Kunert R (2019) Bioprocessing of recombinant CHO­K1, CHO-DG44, and CHO-S: CHO expression hosts favor either mAb production or bio­mass synthesis. Biotechnol J 14(3):e1700686. https://doi.org/10.1002/biot.201700686
121. Wang Q, Yang G, Wang T, Yang W, Betenbaugh MJ, Zhang H (2019) Characterization of intact glycopeptides reveals the impact of culture media on site-specic glycosylation of EPO-Fc fusion protein generated by CHO-GS cells. Biotechnol Bioeng 116(9):2303–2315.
https://doi.org/10.1002/bit.27009
122. Wang C, Wang J, Chen M, Fan L, Zhao L, Tan WS (2018) Ultra-low carbon dioxide partial pressure improves the galactosylation of a monoclonal antibody produced in Chinese ham­ster ovary cells in a bioreactor. Biotechnol Lett 40(8):1201–1208. https://doi.org/10.1007/
s10529- 018- 2586- 4
123. Zhang L, Castan A, Stevenson J, Chatzissavidou N, Vilaplana F, Chotteau V (2019) Combined effects of glycosylation precursors and lactate on the glycoprole of IgG produced by CHO cells. J Biotechnol 289:71–79. https://doi.org/10.1016/j.jbiotec.2018.11.004
124. Ghaffari N, Jardon M, Krahn N, Butler M, Kennard M, Turner R, Gopaluni B, Piret J (2019) Effects of cysteine, asparagine or glutamine limitations in CHO cell batch and fed-batch cultures. Biotechnol Prog 36. https://doi.org/10.1002/btpr.2946
125. Baik JY, Dahodwala H, Oduah E, Talman L, Gemmill TR, Gasimli L, Datta P, Yang B, Li G, Zhang F, Li L, Linhardt RJ, Campbell AM, Goren SF, Sharfstein ST (2015) Optimization of bioprocess conditions improves production of a CHO cell-derived, bioengineered heparin. Biotechnol J 10(7):1067–1081. https://doi.org/10.1002/biot.201400665
126. Nguyen Dang A, Mun M, Rose CM, Ahyow P, Meier A, Sandoval W, Yuk IH (2019) Interaction of cell culture process parameters for modulating mAb afucosylation. Biotechnol Bioeng 116(4):831–845. https://doi.org/10.1002/bit.26908
127. Shalel Levanon S, Aharonovitz O, Maor-Shoshani A, Abraham G, Kenett D, Aloni Y (2018) An efcient method to control high mannose and core fucose levels in glycosylated anti­body production using deoxymannojirimycin. J Biotechnol 276-277:54–62. https://doi.
org/10.1016/j.jbiotec.2018.04.006
128. Bruhlmann D, Muhr A, Parker R, Vuillemin T, Bucsella B, Kalman F, Torre S, La Neve F, Lembo A, Haas T, Sauer M, Souquet J, Broly H, Hemberger J, Jordan M (2017) Cell culture media supplemented with rafnose reproducibly enhances high mannose glycan formation. J Biotechnol 252:32–42. https://doi.org/10.1016/j.jbiotec.2017.04.026
129. Ehret J, Zimmermann M, Eichhorn T, Zimmer A (2019) Impact of cell culture media addi­tives on IgG glycosylation produced in Chinese hamster ovary cells. Biotechnol Bioeng 116(4):816–830. https://doi.org/10.1002/bit.26904
167
168
130. Yin B, Wang Q, Chung CY, Ren X, Bhattacharya R, Yarema KJ, Betenbaugh MJ (2018) Butyrated ManNAc analog improves protein expression in Chinese hamster ovary cells. Biotechnol Bioeng 115(6):1531–1541. https://doi.org/10.1002/bit.26560
131. Wells E, Song L, Greer M, Luo Y, Kurian V, Ogunnaike B, Robinson AS (2020) Media sup­plementation for targeted manipulation of monoclonal antibody galactosylation and fucosyl­ation. Biotechnol Bioeng. https://doi.org/10.1002/bit.27496
132. Prabhu A, Gadgil M (2019) Nickel and cobalt affect galactosylation of recombinant IgG expressed in CHO cells. Biometals 32(1):11–19. https://doi.org/10.1007/s10534- 018- 0152- 0
133. Pande S, Rahardjo A, Livingston B, Mujacic M (2015) Monensin, a small molecule iono­phore, can be used to increase high mannose levels on monoclonal antibodies generated by Chinese hamster ovary production cell-lines. Biotechnol Bioeng 112(7):1383–1394. https://
doi.org/10.1002/bit.25551
134. Grainger RK, James DC (2013) CHO cell line specic prediction and control of recombinant monoclonal antibody N-glycosylation. Biotechnol Bioeng 110(11):2970–2983. https://doi.
org/10.1002/bit.24959
135. Wang Q, Chung CY, Yang W, Yang G, Chough S, Chen Y, Yin B, Bhattacharya R, Hu Y, Saeui CT, Yarema KJ, Betenbaugh MJ, Zhang H (2019) Combining butyrated ManNAc with glycoengineered CHO cells improves EPO glycan quality and production. Biotechnol J 14(4):e1800186. https://doi.org/10.1002/biot.201800186
136. Jing Y, Qian YM, Li ZJ (2010) Sialylation enhancement of CTLA4-Ig fusion protein in Chinese hamster ovary cells by dexamethasone. Biotechnol Bioeng 107(3):488–496. https://
doi.org/10.1002/bit.22827
137. Batra J, Rathore AS (2016) Glycosylation of monoclonal antibody products: current status and future prospects. Biotechnol Prog 32(5):1091–1102. https://doi.org/10.1002/btpr.2366
138. Bas M, Terrier A, Jacque E, Dehenne A, Pochet-Beghin V, Beghin C, Dezetter AS, Dupont G, Engrand A, Beauls B, Mondon P, Fournier N, de Romeuf C, Jorieux S, Fontayne A, Mars LT, Monnet C (2019) Fc sialylation prolongs serum half-life of therapeutic antibodies. J Immunol 202(5):1582–1594. https://doi.org/10.4049/jimmunol.1800896
139. Li D, Lou Y, Zhang Y, Liu S, Li J, Tao J (2021) Sialylated immunoglobulin G: a promising diagnostic and therapeutic strategy for autoimmune diseases. Theranostics 11(11):5430–5446.
https://doi.org/10.7150/thno.53961
R. Pranomphon etal.
Chapter 7
Even aWorm Will Turn: Immunity Following AAV Vector Administration
KrutiPatel, ArpanaKhatri, andSuryanarayanSomanathan
Abstract While several approaches have been considered for invivo delivery of
therapeutic genes, vectors based on a small defective parvovirus, adeno-associated virus (AAV), have proven to be safer in achieving durable therapeutic transgene expression. Nevertheless, the use of vectors based on a virus that infects humans carries the risk of pre-existing host immunity from previous exposure to the virus. Even in the absence of prior infection, administration of large doses of a viral vector can activate host immune responses that can reduce, or prevent, therapeutic gene expression. Hence, careful monitoring of host immune responses before and after vector administration is required when delivering AAV-based gene therapies. Here we review anti-AAV immune responses and the approaches currently being explored to mitigate host immunity and achieve successful therapeutic gene expression.
Keywords Gene therapy · Adeno-associated virus · Innate immunity · Adaptive immunity · Antibodies · Cytotoxic T cells

7.1 Introduction

Extreme remedies are most appropriate for extreme diseases
Hippocrates, Greek Physician, c.460–357 BCE
Genetic medicines are expected to be the next generation of transformational thera­pies. In contrast to treatments with small molecules and monoclonal antibodies that address disease symptoms, genetic medicines treat the root cause of the disease. These novel therapies were rst touted to be the panacea for xing or altering disease- causing genes and alleviating patient suffering. Integration of knowledge from the elds of human genetics, molecular and cell biology, virology, and immu­nology in the 1970s led to early proposals to develop genetic medicines [1]. Nucleic
K. Patel · A. Khatri · S. Somanathan (*) Rare Disease Research Unit, Pzer, Inc., Cambridge, MA, USA
169© The Author(s), under exclusive license to Springer Nature Switzerland AG 2024 K. Gadamasetti, S. A. Kolodziej (eds.), Bioprocessing, Bioengineering and Process Chemistry in the Biopharmaceutical Industry,
https://doi.org/10.1007/978-3-031-62007-2_7