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Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_5186_Библиотеки_им_академика_М_И_Перельмана.pdf
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(BRIP1). The MRN complex composed of MRE11, RAD50 and NBN, then resects the damagedDNA site in 5’to3’ direction in ordertoproduceoverhangingendsofsingle-strand DNA. The sister chromatid is then searched for homologous DNA. BRCA2 is involved in loading the recombinase RAD51 (B/C/D) onto replication protein A (RPA)-coated DNA. Partner and localizer of BRCA2 (PALB2)facilitate the interaction between BRCA1, BRCA2, andRAD51.RAD51nucleoproteinfilamentinvades thehomologousDNA strandandformsa displacement loop (D-loop). Following D-loop formation, the DNA is synthesized using the sisterchromatid DNAasatemplate.The Holliday junctions are resolved,mostlywithout any cross-overeventsandthenewlysynthesizedDNAis ligated (see section on DNArepairand hereditaryovariancancer).
EpigeneticChanges
EpigeneticsdescribechangesofthechromosomeandnottheDNAnucleotidesequence itself (51). Epigenetic changes modify gene expression. Central epigenetic changes are
covalentmodificationsof(i)theDNA,forexample,cytosinemethylation(52)andthemore recently described cytosine hydroxymethylation (53), and (ii) the histones, for example, lysine,arginineand/orthreonineacetylation,methylation,ubiquitination,andSUMOylation.
DNAMethylation
DNA methylation refers to the addition of methyl groups to cytosines of the DNA, mostly in so-called CpG sites or CpG islands. In these sites, the nucleotide cytosine is
followedby aguanine linkedby onlyonephosphategroup.In mammals,70–80% ofCpG cytosines are methylated. Hypermethylated DNA is less transcriptionally active through mechanisms not completely understood; possibly by modulating access of transcription factorstopromotorsites(54).AclinicallyimportantexampleofDNAmethylationisMLH1 hypermethylationinendometrialcancer(seesectiononhereditaryendometrialcancer).DNA methylationcanpersistinthegermlineofoneparentandthenconstitutesthebasisofgenetic imprinting.
NucleosomeModification
To fitthelong DNAdoublehelixmoleculeinto thecell nucleus,whichis straightened outabout2metersinlength,theDNAneedstobepackedandcompacted.Tothisend, the DNA is wrapped around histone proteins and forms so-called nucleosomes. By stacking nucleosomes, chromatin is formed. During transcription, the DNA is not
completely unwound but instead the packing is only locally unwrapped. Modifications of histoneproteinsmaychangetheaccessibilityofDNAandtherebyaltergeneexpression.The most studied covalent histone modification is histone acetylation (55,56). The positively chargednitrogengroupsofhistonelysinesbindtothenegativelychargedphosphategroups of the DNAbackbone. Acetylation of lysines replaces those positively charged groups by neutralgroupsandtherebyloosenstheelectrostaticinteractionsbetweenhistonesandDNA. TheDNApackagingislesstight,allowsmorefrequentbindingoftranscriptionfactors,and
therebyfacilitatestranscription.
RNAs—microRNA,mRNA
DifferentformsofRNAareknowntomodifyproteinexpression.Differentspliceforms and methylation of mRNA (messenger RNA) play a role in this context just as so-called microRNAs(miRNAs). miRNAsare 17–25 nucleotideslong,noncoding RNAsthattarget
and downregulate mRNAs. Each miRNA can neutralize 100 to 200 mRNA copies and therebypost-translationallyregulateproteinexpression(57).
Figure1.5BRCA1-2protein domains and select founder mutations.A:BRCA1 consists of1,863aminoacids.Itsmolecularweightisabout220kDa.BRCA1comprisesaRING(really interestingnew gene) domain, a nuclear localizationsignal(NLS) and nuclear export signal (NES,notshown),aserineclusterdomain(SCD),andBRCA1C-terminus(BRCT).Important domainfunctionsareindicatedbyarrows,interactingproteinsmarkedatthesitesofinteraction with BRCA1. The N-terminally located RING domain exhibits ubiquitin ligase function and is the BRCA1-associated RING domain protein 1 (BARD1) binding site. Following are
retinoblastoma protein (Rb), RAD50, myelocytomatosis (Myc), and RAD51 binding sites, NLS, as well as checkpoint kinase 2 (CHEK2) phosphorylation site. The SCD with multiple
phosphorylationsitesistargetedbyataxiatelangiectasiamutated(ATM)checkpointkinases.A coiled-coil domain is the basis of BRCA1 interaction with partner and localizer of BRCA2
(PALB2), BRCA2. BRCT domains interact and bind various phosphoproteins as well as BRCA1-interactingprotein1(BRIP1)andp53.ShownhereareimportantexamplesofBRCA1-
2foundermutationsandhowtheyaffectthetranslatedBRCA1-2proteins.Thefollowingthree mutationsarecommoninBRCA:185ΔAGresultsinatruncatedfunctionlessproteinofonly39 aminoacids;5382insC resultsina C-terminallytruncatedprotein,lackingBRCTdomains;the C61Gmissensemutationresultsinafull-lengthproteinwithcompromisedfunctionality.BRCA2 consists of 3,418 amino acids. Its molecular weight is about 380 kDa. Important domain functionsare indicated byarrows, interacting proteins marked at the sites of interaction with BRCA2.N-terminuscomprisesBRCA1and PALB2(partnerandlocalizer of BRCA2) binding sites.TheBRCA2proteinharborstwobindingsitesforRAD51(B/C/D),oneintheBRCrepeats andoneattheC-terminus.Furthermore,DNA-bindingsite,nuclearlocalizationsignal(NLS), andCHEK2phosphorylationsite have been described. 6174ΔT, a BRCA2 founder mutation, results in a truncated protein of only 2,002 amino acids (see section on DNA repair and hereditaryovariancancer).
GeneticChangesinGynecologicMalignancies
EndometrialCancer
SporadicEndometrialCancer
Asidefromthehistologicclassificationforendometrialcancer,differentclassificationshave been proposed. The most important have been the Bokhman’s classification of estrogen­dependenttypeIandestrogen-independenttypeIIendometrialcancerandtheclassification proposedbyTheCancerGenomeAtlas(TCGA)basedoncomprehensivegeneticanalyses. In the following, these two classifications and associated genetic alterations will be discussed.
In1983,Bokhman(58)postulatedtwo pathogenetictypesof endometrial cancerdriven
by different metabolic and endocrine signals, the estrogen-dependent type I and the estrogen-independenttype II. Type I demonstrated low-grade endometrioid histology with endometrial hyperplasia as a precursor lesion. Endometrioid histology was associated with early stage at diagnosis and a favorable prognosis. Risk factors for
developing type I endometrial cancer are unopposed estrogen, obesity, and the metabolic syndrome. The insulin-like growth factor may play a role in carcinogenesis. Estrogen is consideredtobea“completecarcinogen,”whichmeansitisabletoinitiatemutagenesisand stimulatecellproliferation(59).DistinctgeneticalterationsintypeIhavebeenreported.
The tumor suppressorgene PTEN is altered in up to 80–90% of type I endometrial cancers(60,61).MostPTENmutationsresultinatruncatednonfunctionalprotein.In15%,a
pointmutationinthephosphatasedomainhasbeennoted.Inupto20%ofcasesofcomplex atypicalhyperplasia,PTENmutationshavebeenidentified,andeveninnormalendometrial glands,PTENmutationshavebeendescribed.Therefore,PTENmutationsareconsidered earlymutationaleventsinendometrialcancerdevelopment,andfrequentlycoexistwith
other mutations in the phosphatidylinositol 3-kinase (PI-3K) pathway (Fig. 1.2), such as mutations of the phosphatidylinositol 3-kinase, catalytic subunit α (PIK3CA) and the phosphatidylinositol 3-kinase regulatory subunit α (PIK3R1) (6264). Other commonly mutatedgenesarefibroblastgrowthfactorreceptor2(FGFR2),AT-richinteractivedomain 1A(ARID1A, see section on ovarian clear cell carcinoma),cateninbeta-1(CTNNB1, see sectiononovarianendometrioidcarcinoma),andKirstenratsarcoma(KRAS,seesectionon rasabove)(6567). Microsatellite instability is found in about 30% of type I endometrial cancers(68).
IncontrasttotypeI,typeIIendometrialcancershavea90%prevalenceofmutations inthetumorsuppressorgeneTP53,whilePTENisonlyrarelymutated.TP53mutations occurinonly15%oftypeIcases.MutantTP53overexpressionisseeninmostuterine serouscancersanditsputativeprecursorlesions(69,70)andthemajority(about75%)of carcinosarcomas (71) (see section on p53 above). PIK3CA and PPP2R1A (protein phosphatase 2 regulatory subunit α) are frequently mutated in type II cancers (72,73). In
addition, Her2neu (see section on ErbB above) has been shown to be overexpressed in uterine serous cancers. The fraction of uterine serous cancers overexpressing Her2neu remainsuncertain,rangingfrom14–80%indifferentpublications.Theseinconsistentresults are most likely due to nonstandardized immunostaining protocols for Her2neu receptors (7478).
Substantial heterogeneity within, and overlap between, these postulated two types of endometrial cancerhas been recognized, and this classification neverbecame part of the formal endometrial cancer staging. Several immunohistochemical and/or mutational
profileshavebeendevelopedtohelpdistinguishendometrialcancer subtypesofprognostic relevance.Themostcomprehensivemolecularstudytodatehasbeenthatprovidedby The Cancer Genome Atlas (TCGA) (79). TCGA analyzed tumor samples from 373 patients, primarily endometrioid cancers (82.3%), with fewer of serous (14.2%) or mixed histology(3.5%).Basedonsomaticmutationfrequency,microsatelliteinstabilityandsomatic copy-number alterations, endometrial cancers were classified into four groups with
differentprognoses:(1)anultramutatedgroupwith232×10−6mutationsperMb,(2)a hypermutatedgroup with18×10−6mutationsper Mb, and microsatellite instable (MSI) cancers, (3) a group with only 2.9 × 10−6 mutations per Mb and microsatellite stable cancers, and (4) a group with 2.3 × 10−6 mutations per Mb with high copy-number alterations.
UltramutatedEndometrialCancers
The mutation rate in cancers of this group is 100-fold increased. Mutations in the catalytic subunit of the DNA polymerase epsilon (POLE) were identified. POLE is
responsibleforreplicationoftheleadingstrandofDNA.Itshowsexonucleaseproofreading functionandthushigh-fidelityincorporationofbases,whichensuresalowmutationratein
thedaughterstrand.Inendometrialcancers,two hotspot mutations within the exonuclease domain were identified, that is, P286R in exon 9 and V411L in exon 13. Amino acid substitutions in these locations have been shown to suppress proofreading (80). Cancers
withPOLEmutationsareassociatedwithhigh-gradefeatures,yetfavorableoutcomes andlowrecurrencerates.Theseassociationshavebeencorroboratedbyfollow-upstudies (8184). On histologic examination, POLE-mutated endometrial cancers show dense lymphocytic infiltrates. Therefore, POLE-mutated endometrial cancers may respond favorablytoimmunetherapy(85,86).
HypermutatedEndometrialCancers
Thiscategorycomprisedone-thirdofallexaminedendometrialcancersinTCGA,andwere mostly Bokhman’s type I. This group is defined by defects in the post-replicative DNA mismatch repair system and shows microsatellite instability (MSI; see section on MMR proteins above). The detected mutation rate is 10-fold higher than in microsatellite stable endometrialcancers.InTCGA,microsatelliteinstabilitywasdeterminedby apaneloffour mononucleotide repeat loci (polyadenine tracts BAT25, BAT26, BAT40, and transforming growth factor receptor type II) and three dinucleotide repeat loci (CArepeats in D2S123, D5S346, and D17S250) in addition to the recommended markers by the National Cancer Institute(87). Cancers were defined (i) microsatellite-stable(MSS) if none of the markers showedalterations,(ii)low-levelMSI(MSI-L)ifonetotwomarkerswerealtered(lessthan 40%),and(iii)high-levelMSI(MSI-H)ifthreeormoremarkerswerealtered(greaterthan 40%).
Mismatch repair deficiencies can result from (i) the inherited Lynch syndrome (see section on hereditary endometrial cancer), (ii) acquired, somatic mutations, or (iii) epigenetic events, for example, methylation of one of the genes involved in mismatch DNA repair, most commonly MLH1. Additional frequent mutations in this group of endometrialcancerswerenotedintheKirstenratsarcoma(KRAS)gene.
MicrosatelliteStableEndometrialCancers
Thisgroup showsa lowmutational rate,ismicrosatellitestable,andhaslow copy-number alterations,but frequentmutationsin thecatenin beta-1(CTNNB1; see sectionon ovarian endometrioid carcinoma) pathway, which is involved in cell–cell adhesion and WNT (integration1/Wingless)signaling.
HighCopy-NumberAlterationEndometrialCancers
Copy-number variations are structural alterations in which sections of the genome are increased or decreased in number by either multiplication or deletion. Fluorescent in situ hybridization (FISH) and comparative genomic hybridization (CGH) have been used for detectingstructuralvariationsinthegenome.Thedrawbackofthesetechniqueshasbeenthe
lowresolutionandonlylargerepeatscouldbedetected.Nextgenerationsequencingallowed for single nucleotide resolution and the detection of single nucleotide substitution, which result in so-called single-nucleotide polymorphisms (SNPs). TCGA used an Affymetrix platform to detect those SNPs from frozen tissue. Hierarchical clustering identified significantlyreoccurringregionsofamplificationsordeletionsanddefineda“copynumber (CN) high” subgroup. This group exhibited frequent TP53 mutations and comprised
uterineserousandgrade-3endometrioidendometrialcancers.
Ithasbeenhypothesizedthathighlymutatedcancers,thatis,POLE-mutatedand,toa lesser extent, MSI-H tumors, have a higher neoantigen load, are thus more immunogenicandshowanimmunecell-richtumormicroenvironment.Therefore,these
tumors, despite their pathologically aggressive nature, may have a favorable prognosis. Following the TCGA data, different groups have collaborated to distinguish parameters suggested by TCGA, that is, POLE, MSI-H, TP53 and have implemented different more affordabletestingtools(83,88).Furthermore,theendometrialcancerclassificationsuggested byTCGAwasimplementedinclinicaltrialstoassessifthisclassificationcouldhelpguide therapeuticdecisions.Themostprominentexampleis the ongoing postoperative radiation therapyinendometrialcancer(PORTEC)-4study,whichisthefirstrandomizedclinicaltrial to assess the use of a molecular profile to assign adjuvant treatment for women with endometrialcancer(NCT03469674)(89).
TCGAanalyzed57uterinecarcinosarcomas(90)andfoundevidencethatmostuterine carcinosarcomasde-differentiatefromuterineserousprecursors,whilefewarederived fromanendometrioidlineage.TCGAdatasuggestacarcinomaoriginandthepreservation
of certain ancestral genetic alterations in uterine carcinosarcomas. More than 75% of the casesshowedalterationsinF-box/WDrepeat-containingprotein7(FBXW7),aproteinthat likelybindscyclinEandmediatesitsubiquitin-mediateddegradation,G1/Sspecificcyclin- E1(CCNE1),orretinoblastoma(RB),allofwhichindicatedysregulationsinthecellcycle. About50%ofcaseshadamutationinphosphatidylinositide3-kinase(PI-3K)(seeFig.1.2). ManytumorsshowedalterationsinAT-richinteractivedomain1A(ARID1A;seesectionon ovarianclearcellcarcinoma).
HereditaryEndometrialCancer
Three to 5% of endometrial cancers develop because of Lynch syndrome. Lynch syndrome was previously known as hereditary nonpolyposis colorectal cancer (HNPCC). Lynch syndrome is an autosomal dominant inherited condition and is caused by mutations in one of the following proteins involved in DNA mismatch repair: mutL homolog1(MLH1),mutShomolog2(MSH2),mutShomolog6(MSH6),pms1homolog2
(PMS2),andepithelialcelladhesionmolecule(EPCAM).
In1913,AldredScottWarthin5(92)publishedthefirstreportonafamilywithanincreased
incidenceofuterineandgastrointestinalcancers.In1971(93)and2005(94), HenryLynch expandedthisreportonthecancerfamilyG:in2005,thecancerhistoryoffamilyGincluded 929 descendants over seven generations. Aside from family G, Henry Lynch examined severalotherfamiliessince1966(95).In1985,HenryLynchhimselfnamedtheunderlying syndrome HNPCC, while others have called it Lynch syndrome since 1984. Individuals
affected by Lynch syndrome have a lifetime risk of developing endometrial cancer throughtheageof70of16–61%(96,97)comparedtoabaselinelifetimeriskof2.7%. ThelifetimeriskinferredbyLynchsyndromevariesdependingupontheaffectedMMR protein:MLH143–57%,MSH221–57%,MSH617–46%,andPMS20–15%(98103). ThelifetimeriskforendometrialcancerinferredbyEpCammutationscanbesimilarto thatofMSH2(104,105).Thelifetimeriskforcolorectal cancer is in the range of 18– 61%,similartotheinferredriskforendometrialcancerwithLynchsyndrome(97).By comparison,thelifetimeriskofcoloncancerinthegeneralpopulationisabout4.5%.
Endometrial canceris the most common sentinel cancerof Lynchsyndrome. Ovarian
cancer risk is increased to 5–12% in Lynch syndrome, compared to 1–2% in the general population.Averageageatdiagnosisofendometrialcanceris46,andofovariancanceritis
42. Lynch syndrome–associated endometrial cancers are mostly well-differentiated endometrioidcancersandearly-stage(106,107).Theriskofdevelopingcancersoftheupper gastrointestinal tract (including gastric, duodenal, hepatobiliary, pancreatic), urinary tract, prostate,andbrainismildlytomoderatelyincreased.
Defectsin themismatch repairsystemresultingenomic instability.Diagnostic testsof the cancer specimen may examine either the expression of MMR proteins by immunohistochemistryormicrosatelliteinstabilityusingDNAprimers(seesectiononMMR proteins). Concordance between microsatellite testing and immunohistochemistry has been reportedas93.3–97.5%(108,109).Bothmicrosatelliteinstabilityandloss ofMMR protein expression can be caused by epigenetic gene silencing through hypermethylation. NoninheritedmethylationoftheMLH1promoterisseenin20–30%ofendometrialcancers and must be excluded. Therefore, loss of MLH1 protein expression on immunohistochemistry should be followed by hypermethylation testing. Inherited deletion of the 3′ end of the EpCAM gene, which encodes a transmembrane glycoprotein, causeshypermethylationofthepromotorregionofMSH2andtherebyepigeneticinactivation of MSH2. Germline testing is needed to confirm definitively the diagnosis of Lynch
syndrome.
ToidentifypatientsatriskforLynchsyndromebasedonfamilyhistory,differentscreening criteria have been developed. The initial AmsterdamCriteria from 1990 did not include extracolonicmalignancies(110)andwerereplacedbytheBethesdaGuidelines from1997 and its revised version from 2004 (87,111). Although the Bethesda criteria are more
sensitivethan theAmsterdam criteria,upto 50%ofLynchsyndromepatientsdonot
meettherevisedBethesdaGuidelines.
UterineMesenchymalTumors
SporadicUterineMesenchymalTumors
EndometrialStromalSarcoma
JAZF1/SUZ12(JuxtaposedwithAnotherZincFingerProtein1/Suppressorof Zeste-12)
In1991,thefirst reportonthechromosomal translocationt(7;17)inlow-grade endometrial stromal sarcoma was published (112). This translocation results in the fusion of two zinc finger, DNA-binding proteins JAZF1/SUZ12 (previously, JAZF1/JJAZ1) (113). This gene fusionhasbeenfoundin75%ofendometrialstromalnodules,50%oflow-gradeendometrial stromalsarcomas,andonly15%ofhigh-gradeendometrialstromalsarcomas(114).Despite its use for diagnostic purposes, especially in combination with YWHAE (see section on YWHAEbelow), the functionof the genefusion remains unclear.Ithas beenhypothesized thatJAZF1mayfunctionasatumorsuppressorgeneandmaylosethisfunctioninthegene fusion product (115). Other gene fusions have been described in low-grade endometrial stromalsarcomaincludingJAZF1/PHF1,EPC1/PHF1,andMEAF6/PHF1(116).
YWHAE/NUTM2A/B(Tyrosine(Y)3-Mono-oxygenase/Tryptophan(W)5-Mono­oxygenaseActivationProteinEpsilon/NuclearProteininTestisFamilyMember 2A/B)
High-grade endometrial stromal sarcomas show the chromosomal translocation t(10;17), which results in the YWHAE-NUTM2A/B (previously, YWHAE-FAM22A/B) fusion protein. YWHAE encodes the 14-3-3ε protein. 14-3-3 proteins bind to proteins that contain phosphoserineorphosphothreoninemotifsandareknowntointeractwithover200proteins. Thereby,theyareinvolvedinamultitudeofcellularfunctionsincludingsignaltransduction, cellcycling,apoptosis,andneuronaldevelopment.NUTM2AandBproteinfunctionispoorly describedaswell.Thefusionproteinof14-3-3εandNUTM2A/Bretainsthefunctionofthe 14-3-3ε, but results in aberrant nuclear localization of the 14-3-3ε (117). The pathomechanism of this fusion protein has not been elucidated. KIT and platelet-derived
growth factor receptor alpha (PDGFR-α) mutations have been described in YWHAE- NUTM2A/Brearrangedhigh-gradeendometrialstromalsarcomas(118).
Leiomyosarcoma
Thusfar,nomolecularmarkerhasbeenfoundtobeconsistentlyassociatedwithuterine leiomyosarcomas. However, low-molecular mass protein 2 (LMP2) deficiency has been
showntoresultinthedevelopmentofleiomyosarcomasinalmost40%ofmice(119).LMP2 seemstobeabsentinuterineleiomyosarcomas,butpresentinleiomyomata.LMP2ispartof
theimmunoproteasome,inducedbyinterferon-γandassuchpotentiallyinvolvedintheMHC I-mediatedtumorrejection(120).
HereditaryUterineMesenchymalTumors
Leiomyoma
In 1973, Reed et al. (121) reported families with successive generations of patients with cutaneous and uterine leiomyomas and/or leiomyosarcomas. Later, the association of cutaneous and uterine leiomyomatosis with renal cell cancer was described (122).
Hereditaryleiomyomatosisand renalcell cancer (HLRCC), or Reed syndrome, is an autosomaldominantconditioncharacterizedby(i)cutaneouspiloleiomyomas,(ii)early­onset uterine leiomyomas and (iii) early-onset, that is, before the age of 40, type II papillaryrenalcellcancer.Theunderlyingheterozygousgermlinemutationwasidentified
in 2002 in mutations of the fumarate hydratase (FH) gene (123). Germline FH mutations havebeendetectedinabout75–100%offamilieswithsuggestiveclinicalfeatures(124,125). Fumarase or fumarate hydratase has two isoenzymes; the mitochondrial isoenzyme is involved in the Krebs cycle (citric acid cycle or tricarboxylic acid cycle [TCA]) and the cytosolicisoenzyme partakesin the metabolismof aminoacidsand fumarate.In the TCA, FH catalyzes the reversible hydration of fumarate to malate and thereby facilitates a transition step in cellular NADH production. The pathologic mechanism of this enzyme defectinHLRCCisnotclear.Ithasbeenhypothesizedthatpseudohypoxiaduetodefectsin TCAmaydrivetumorigenesis(126)orthatFHmayactasatumorsuppressorgene(127).
OvarianCancer
SporadicOvarianCancer
Epithelial ovarian cancers are a rather heterogeneous group with respect to behavior and histology. Various classifications have been attempted but have not been as successful in clinical use as the aforementioned endometrial cancer classifications. Kurman and Shih (128)suggestedgroupingepithelialovariancancersintotwotypeswithdifferentclinical behavioranddifferentmolecularcharacteristics. TypeI includedborderlineandinvasive
but low-grade cancers of serous, mucinous, endometrioid and clear cell histology, comprisingabout25%ofepithelialovariancancers. Thesecancers arein generalslow-
growing,confinedtotheovaryatthetimeofdiagnosisanddevelopfromprecursorlesions. They are genetically stable and show mutations in Kirsten rat sarcoma (KRAS), rapidly
activated fibrosarcoma (BRAF), phosphatase and tensin homolog (PTEN), and catenin beta-1(CTNNB1).TypeIIincludesabout75%ofepithelialovariancancers,includinghigh-
grade serous ovarian cancers, carcinosarcomas, and undifferentiated ovarian cancers. This typeisrapidlygrowing,hasnowell-definedprecursorlesionsandis characterizedby high geneticinstabilityandfrequentTP53mutations.
High-GradeSerousCarcinoma
TheCancer GenomeAtlaspublished a genomic analysisof489 patients with high-grade serousovariancancer(129).TP53andBRCA1wereconfirmedtobethemostfrequently mutatedgenesinhigh-gradeserousovariancancer(130,131).In96%ofcases,thetumor suppressorgeneTP53wasfoundtobemutated.TP53mutationshavebeenfoundinserous tubal in situ carcinomas (STICs) and are known to be early events in ovarian cancer development(132).Two-thirdsofhigh-gradeserouscancershavemissensemutationsinthe DNA-binding domains, that is, in exons 5 to 8. These missense mutations are dominant negative mutations and mediate greater protein stability resulting in p53 overexpression. Other mutations in TP53 lead to a truncated nonfunctional protein, which is usually accompaniedbyalossoftheotherTP53allele(130,133).
IntheTCGAdata,abouthalfoftheanalyzedhigh-gradeovariancancershaddefectsin thedouble-strandDNAhomologousrecombination(HR)pathway.BRCA1and BRCA2
germline mutations were present in 9% and 8%, respectively and an additional 3% had somaticBRCA1orBRCA2(BRCA1-2)mutations.EpigeneticsilencingofBRCA1inducedby promotorhypermethylationwasfoundin11%,consistentwithpriordata(134).Thissuggests thatapproximately30% of defectiveHRresultsfromlossofBRCA1-2function,while
the remainder is caused by inherited or acquired defects in other genes of the HR pathway. TCGA described four subtypes: (i) immunoreactive, (ii) differentiated, (iii) proliferative, and (iv) mesenchymal. In contrast to the findings of the TCGA for
endometrial cancer, thus far, this ovarian classification has not been shown to be of prognosticortherapeuticvalue.
OvarianCarcinosarcoma
Limited data on ovarian carcinosarcoma show that TP53 is mutated in 25–67% of cases, Kirstenratsarcoma(KRAS)in15%andphosphatidylinositol3-kinase, catalytic subunit α (PIK3CA) in 19–40%, Phosphatase and tensin homolog (PTEN) in 40%, and AT-rich interactive domain (ARID1A) in 32% (135137). As with uterine carcinosarcoma, these analyses do not differentiate the sarcomatous and carcinomatous components of these biphasictumors,whichmayskewtheresults.
Low-GradeSerousCarcinoma
Low-grade serous carcinomas display the p53 wild-type protein, in contrast to high-grade serousovariancarcinomas,butupto65%ofcaseshavemutationsinKirstenratsarcoma (KRAS) and rapidly activated fibrosarcoma (BRAF) (138,139). Mutations in the serine/threonine kinase BRAF may occur in patients without concurrent KRAS mutations suggestingcomplementaryfunctionintheactivationofthemitogen-activatedproteinkinase (MAPK)signalingpathway.BRAFmutationusuallydoesnotaffecttheprognosis,while
thepresenceofKRAShasbeendescribedasanadverseprognosticfactorinlow-grade