
- •Section I Control of the initial level of knowledge. Biochemical constituents of the cell. Methods of biochemical investigations.
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •77. Discribe the method, shown at the picture below:
- •78. Discribe the method, shown at the picture below:
- •Section іі Enzymes, structure and classification. Regulation of metabolism
- •Е. Whatever part of polypeptide chain of enzyme molecule.
- •Substrate concentration at which reaction rate is half maximal
- •The second enzyme has higher affinity to substrate
- •Competitive
- •Examples of Krok 1 tests
- •Cysteine
- •B. Amylase
- •Peptidases
- •Enteropeptidase
- •Clinical cases and Situational tasks
- •Section ііi Metabolic pathways and bioenergetics. Tricarboxylic acid cycle. Biological oxidation and oxidative phopshorylation
- •1. When atp forms amp:
- •B. Protons
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section іv Structure and metabolism of carbohydrates
- •19. Chose the reaction of glycolysis catalyzed by an enzyme phosphofructokinase:
- •A. Liver
- •Examples of Krok 1 tests
- •Acetoacetate, β-hydroxybulyrate, and acetone
- •Clinical cases and Situational tasks
- •Section іv Structure and metabolism of lipids
- •Examples of Krok 1 tests
- •143. A patient with high rate of obesity was advised to use carnitine as a food additive in order to enhance "fat burning". What is the role of carnitine in the process of fat oxidation?
- •144. Lipids are obvious energetic material for the body. What is the main pathway of fatty acids metabolism in mitochondria?
- •Clinical cases and Situational tasks Situational tasks
- •179. The patient is observed an allocation of undigested fat in the faeces. What are the possible causes for this?
- •184. Free cholesterol can affect cholesterol metabolism in the body by inhibiting cholesterol biosynthesis. By which step free cholesterol can inhibit its biosynthesis?
- •186. Explain the mechanism of phospholipids breakdown, shown at the scheme below:
- •Section VI Structure and metabolism of amino acids
- •B. Amylase
- •Examples of Krok 1 tests
- •112. According to clinical indications a patient was administered pyridoxal phosphate. What processes is this medication intended to correct?
- •Clinical cases and Situational tasks
- •145. In a patient 10 g of urine per day is excreted. Evaluate this result.
- •151. Skin color is the aggregate result of the expression of a number of genes modified by ethnic origin and genetic inheritance. What can cause the hypopigmentation?
- •Section VII Principles of molecular biology and molecular genetics
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •108. List and describe properties of the genetic code.
- •113. Fill in the blanks.
- •114. Put the numbers of the enzymes on their place in the picture. Using arrows indicate the direction of replication and direction of synthesis of leading and lagging strands.
- •Section VIII Molecular mechanisms of hormone action on target cells. Biochemistry of hormonal regulation
- •Examples of Krok 1 tests
- •78. For analgesia, a certain substance which imitates the physiological properties of morphine but is synthesized inside the human brain can be used. Name this substance.
- •80. A patient suffering from rheumatism was administered glucocorticoid therapy. What changes in carbohydrate metabolism in liver can be expected?
- •88. In blood of a patient a hypercalcemia, hypophosphatemia, in urine – hyperphosphaturia is observed. What is a possible cause of this state?
- •90. In 13 years old girl a hypotension and polyuria is observed. Preliminary diagnosis – diabetes insipidus. It is caused by deficiency of:
- •93. Signaling via prostanoids begins by interaction of the prostanoid with its receptor. The receptor involved is usually located in which part of the cell?
- •Clinical cases and Situational tasks
- •97. In 13 years old girl a hypotension and polyuria is observed. Preliminary diagnosis – diabetes insipidus. Which hormone deficiency can cause this disease?
- •99. The thyroid hormones t3 and t4 are synthesized in the follicular cells of the thyroid gland. From which of the following essential amino acids are the thyroid hormones synthesized?
- •101. Name types of signalling:
- •Section IX Biochemistry of the nervous tissue
- •С. Ketone bodies
- •24. What compound may be used by the cns cells after extensive physical exercises and prolonged starvation?
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •114. Describe the structure of a synapse and explain how it operates?
- •Section X Biochemistry of the Muscular tissue
- •D. Glycogenolysis in muscles
- •С. Fatigue faster compared to the red fibers
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XI Biochemistry of nutrition
- •1. Note substance, which activates pepsinogen to pepsin:
- •2. Chose the enzyme which plays an important role in production of hydrochloric acid by parietal cells of gastric mucosa glands:
- •3. Which of the following is not a function of the pancreas?
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •62. The clinical and laboratory examination of the patient evaluated the presence of the lactic acid in his gastric juice. What does it indicate? What should be recommended to the patient?
- •69. Discribe the mechanism of hydrochloric acid production shown at the picture:
- •Section XII Functional role of water soluble and fat soluble vitamins in metabolism and providement of cell functions
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •100. A deficiency in thiamine (vitamin b1) would most likely lead to which clinical manifestations?
- •Section XIII Biochemistry and pathobiochemistry of blood
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •89. The blood clotting cascade in humans is represented in the picture below. Using this scheme answer the following questions:
- •Section XIV Functional and clinical biochemistry of liver tissue. Biotransformation of xenobiotics and endogenous toxic compounds
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XV Water and mineral metabolism
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XVI Functional role of kidneys in urinogenesis. Normal and pathological constituents of urine
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XVII Biochemical constituents of connective tissue
- •Examples of Krok 1 Tests
- •Clinical cases and Situational tasks
- •34. Patient with burn disease is at the risk of formation of blood clots in blood vessels. What glycosaminoglycan may be used to prevent formation of blood clots?
- •Section XVIII Biochemistry of saliva and tooth tissue
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XIX. Biochemical reactions
- •References:
Clinical cases and Situational tasks
92. What is the purpose of a salivary gland during digestion?
Answer: The salivary gland produces amylase that helps to break down starches and liquefy the food in the chewing phase of digestion. Once swallowed, the food is exposed to more enzymes and processes that complete the digestion as it travels through the various areas of the digestive tract.
93. What salivary glands are inflamed during mumps?
Anser: The most common salivary gland infection in children is mumps, which involves the parotid glands. The parotid gland is the largest of the salivary glands. It is found wrapped around the mandibular ramus, and it secretes saliva through Stensen's duct into the oral cavity, to facilitate mastication and swallowing. Parotid inflammation (or parotitis) occurs in 60-70% of infections and 95% of patients with symptoms. Parotitis causes swelling and local pain, particularly when chewing. It can occur on one side (unilateral) or both sides (bilateral).
94. Usually salivary gland cancer may not cause any symptoms. It is sometimes found during a regular dental check-up or physical exam. How is salivary gland cancer diagnosed? What is the treatment for salivary gland cancer?
Answer: Typically these present as a lump of the parotid gland, submandibular gland, mouth or throat. Adenoid cystic carcinoma may also include facial paralysis or numbness. Salivary duct carcinoma patients more commonly have lymph node metastasis.
A diagnosis is made after a biopsy of the affected tissue(s). Currently, the standard practice is complete surgical excision. Depending on the histological findings, some patients (most high grade tumors) may also undergo post-operative radiation therapy. However, almost 25% of patients develop recurrence and/or metastasis within 5 to 10 years.
Section XIX. Biochemical reactions
Write biochemical conversions, shown below inserting missed metabolites (x1-xn):
.
1. Stearate → х1 → Acetyl-CoA → х2 → Hydroxymethylglutaryl-CоА → х3 → Acetone
2. Ethanol → х1 → Acetate → х2 → Palmitate → х3 → Diacylglycerole
3. Arginilglycine → х1 → Guanidineacetate → x2 → Creatinephosphate → АТP → Carbamoil phosphate → Citrulline → Urea
4. Pyruvate → Alanine → NADH2 → Glycerol-3-phosphate → Phosphatidic acid → x1 → Glucose-1-phosphate → x2 → Glucose
5. Galactose → x1 → Galactose-1-phosphate → x2 → Glucose-6-phosphate → NADPН2 → Mevalonate → Heme
6. α-Ketoglutarate → Oxaloacetate → x1 → 2-phosphoglycerate → x2 → 1,3-diphosphoglycerate → x3 → dioxyacetonephosphste → 3-phospoglycerate
7. Succinyl-CоА → x1 → Fumarate → x2 → Oxaloacetate → Aspartate → Argininosuccinate → Arginine → Nitric oxide (NO)
8. Pyruvate → x1 → Phosphoenolpyruvate → АТP → Orthophosphate → x2 → Glucose-6-phosphate
9. Glycerol → x1 → Dioxyaceton phosphate → x3 → Glucose-6-phosphate → Glucose → Glicogen
10. Pyruvate → α-Ketoglutarate → x1 → Glutamine → x2 → Carbamoyl phosphate → Citrulline → Argininosuccinate → x3 → Nitric oxide
11. Maltose → x1 → Glucose-6-phosphste → x2 → UDP-glucose → x3 → Glucose
12. Acetyl-CоА → х1 → Hydroxymethylglutaryl-CоА → х2 → Oxybutirate
13. Palmitate → x1 → Acetyl-CоА → x2 → cys-Aconitate → х3 → α-Ketoglutarate → Glutamate → Glutamine
14. Succinate → х1 → Acetoacetyl-CоА → х2 → Citrate → х3 → Isocitrate → х4 → х5 → Succinate → Fumarate → х6 → Oxaloacetate
15. Serine → х1 → Glutamine → Glutamate → Ammonia → Carbamoyl phosphate → х2 → Argininosuccinate → х3 → Urea
16. GTP → GMP → х1 → Guanine → х2 → Uric acid
17. Arginine → х1 → Citrulline → х2 → Fumarate→ х3 → Oxaloacetate → Aspartate → Asparagine → Ammonia salts
18. Oxaloacetate → х1 → Carbamoyl phosphate → х2 → Orotate → Оrotidine-5’-phosphate → UMP
19. UMP → х1 → х2 → CTP → CDP-serine → Phosphatylserine
20. Asparagine → х1 → Carbamoyl phosphate → Carbamoyl aspartate → х2 → Orotate → х3 → UMP
21. Hemoglobine → х1 → Biliverdin → х2 → Mesobilirubin→ Stercobilin
22. Alanine → х1 → Glutamine → Glutamate → Ammonia → Carbamoyl phosphate → х2 → Argininosuccinate → х3 → Nitric oxide (NO)
23. Protein → Tyrosine→ х1 → Dopamine → х2 → Epinephrine
24. АTP → АМP → х1 → Inosine → х2 → Xantine → Uric acid
25. Argininosuccinate → Arginine → х1 → Citrulline → х2 → Fumarate → х3 → Oxaloacetate → Aspartate → Asparagine → Carbamoyl phosphate
26. Pyruvate → Oxaloacetate → х1 → Citrate → х2 → Isocitrate → α-Ketoglutarate → Glutamate
27. α- Ketoglutarate → Succinyl-CоА → δ-Аminolevulinic acid → х1 → Protoporphin-ІX → Heme → Hemoglobin
28. UMP → х1 → х2 → UTP → UDP-choline → Phosphatidylecholine
29. Phenylalanine → Тyrosine → Dioxyphenylalanine → х2 → Norepinephrine → Epinephrine
30. Aspartic acid→ х1 → Carbamoyl phosphate → Carbamoyl aspartate → X2 → Оrotic acid
31. Glycerol → х1 → Dioxyacetonephosphate → х2 → 1,3-Dioxyacetonephosphate → АТP → Pyrophosphate
32. Protein → Alanine → х1 → Аcetyl-CоА → х2 → Acetoacetate → Аcetoacetyl-CоА → 2-аcetyl-CоА → х3 → Аcetone
33. Pyrophosphate → х1 → Glucоse-1-phosphate → х2 → Оrthophosphate → 1,3-diphosphogycerate → АТP → Fructose-6-phosphate → х3 → dioxyacetonephosphate
34. Cystine → Cysteine → Glutamate → х1 → α-Ketoglutarate → Oxaloacetate → х2 → АТP
35. Alanine → Pyruvate → х1 → Carbamoyl phosphate → Citrulline → х2 → Arginine → Creatine → Creatinine
36. Pyruvate → х1 → Acetyl-CоА → х2 → cys-Аconitate → х3 → NADН2 → 3АТP
37. Glutamate → х1 → α-Кetoglutarate → Oxaloacetate → х2 → АТP → х3 → Glucose-6-phosphate
38. Glucose → Glucose-6-phosphate → NАDPН2 → Glutamate → Glutamine → х1
39. АТP → х1 → 3-phosphogyceraldehyde → х2 → Phructose-1,6-diphosphate → х3 → Glucose-6-phosphate → Glucose
40. Arginine → х1 → х2 → Phosphocreatine → Оrthophosphate → Glucose-1-phosphate → х3 → Glucose → UDP-glucose
41. Fructose-1,6-diphosphate → x1 → Dioxyacetonephosphate → x2 → Phosphatidic acid → Phosphatidylinositol
42. NАDН2 → Glycerol-3-phosphate → Phosphatidic acid → х1 → Glucose-1-phosphate → х2 → Glucose → х3 → Glycogen
43. Fumaric acid → х1 → Oxaloacetate → х2 → Argininosuccinate → х3 → Urea
44. Acetyl-CоА → Fatty acid → Acyl-CоА → Phosphatidic acid → Оrthophosphate → АТP → х1 → Glucose-1-phosphate → х2 → Glycogen
45. Glucose → Glucose-6-phosphate → х1 → Tyrosine → х2 → Homogentistic acid → х3 → Fumarylacetoacetate
46. β-Hydroxybutiric acid → х1 → Acetoacetyl-CоА → х2 → Citrate → х3 → Isocitrate → α-ketoglutarate + СО2
47. GTP → Phosphoenolpyruvate → х1 → S-Adenosyl methionine → Phosphatidylcholine → Diacylglicerole → х2 → Acyl-CоА → Acetyl-CоА
48. Aspartate → х1 → Аmmonia → Glutamate → α-Кеtoglutarate → СО2 → Oxaloacetate → х2 → Citrate
49. Acetyl-КоА → х1 → cys-Аconitate → х2 → СО2 → х3 → Citrulline → Argininosuccinate → Fumarate
50. 2-phosphoglycerate → х1 → 1,3-diphosphoglycerate → х2 → Dioxyacetonephosphate → Fructose-1,6-diphosphate → Phosphogliceraldehyde → Dioxyacetonephosphate
51. Acetoacetate → СО2 → Malonyl-CоА → Fatty acid → х1 → Phosphatidic acid → Cephaline
52. Fatty acid → х1 → Phosphatidic acid → х2 → Phosphatidylethanoamine → Ethanolamine
53. Fructose-6-phosphate → х1 → Dioxyacetonephosphate → х2 → х3 → Diacylglicerol → х4 → Fatty acid → Acetyl-CoA → Acetoacetyl-CоА → х5 → Hydroxybutirate
54. Citrate → х1 → х2 → α-Ketoglutarate → Glutamate → Aspartate → х3 → Arginine → х4 → Creatine → Creatinine
55. Amino acid → х1 → Glutamine → х2 → GABA → х3 → NH4+
56. Alanine → х1 → Аcetyl-CоА → х2 → Hydroxymethylglutaryl-CоА → х3 → х4 → Аcetyl-CоА → Fatty acid
57. Succinyl-CоА → х1 → Porphobilinogen → х2 → х3 → Coproporphyrinogen ІІІ → х4 →х5 → Heme
58. Acetyl-CоА → х1 → cys-Aconitate → х2 → СО2 → х3 → Citrulline → Аspartate → х4 → Аrginine → Nitric oxyde (NO)