
- •Section I Control of the initial level of knowledge. Biochemical constituents of the cell. Methods of biochemical investigations.
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •77. Discribe the method, shown at the picture below:
- •78. Discribe the method, shown at the picture below:
- •Section іі Enzymes, structure and classification. Regulation of metabolism
- •Е. Whatever part of polypeptide chain of enzyme molecule.
- •Substrate concentration at which reaction rate is half maximal
- •The second enzyme has higher affinity to substrate
- •Competitive
- •Examples of Krok 1 tests
- •Cysteine
- •B. Amylase
- •Peptidases
- •Enteropeptidase
- •Clinical cases and Situational tasks
- •Section ііi Metabolic pathways and bioenergetics. Tricarboxylic acid cycle. Biological oxidation and oxidative phopshorylation
- •1. When atp forms amp:
- •B. Protons
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section іv Structure and metabolism of carbohydrates
- •19. Chose the reaction of glycolysis catalyzed by an enzyme phosphofructokinase:
- •A. Liver
- •Examples of Krok 1 tests
- •Acetoacetate, β-hydroxybulyrate, and acetone
- •Clinical cases and Situational tasks
- •Section іv Structure and metabolism of lipids
- •Examples of Krok 1 tests
- •143. A patient with high rate of obesity was advised to use carnitine as a food additive in order to enhance "fat burning". What is the role of carnitine in the process of fat oxidation?
- •144. Lipids are obvious energetic material for the body. What is the main pathway of fatty acids metabolism in mitochondria?
- •Clinical cases and Situational tasks Situational tasks
- •179. The patient is observed an allocation of undigested fat in the faeces. What are the possible causes for this?
- •184. Free cholesterol can affect cholesterol metabolism in the body by inhibiting cholesterol biosynthesis. By which step free cholesterol can inhibit its biosynthesis?
- •186. Explain the mechanism of phospholipids breakdown, shown at the scheme below:
- •Section VI Structure and metabolism of amino acids
- •B. Amylase
- •Examples of Krok 1 tests
- •112. According to clinical indications a patient was administered pyridoxal phosphate. What processes is this medication intended to correct?
- •Clinical cases and Situational tasks
- •145. In a patient 10 g of urine per day is excreted. Evaluate this result.
- •151. Skin color is the aggregate result of the expression of a number of genes modified by ethnic origin and genetic inheritance. What can cause the hypopigmentation?
- •Section VII Principles of molecular biology and molecular genetics
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •108. List and describe properties of the genetic code.
- •113. Fill in the blanks.
- •114. Put the numbers of the enzymes on their place in the picture. Using arrows indicate the direction of replication and direction of synthesis of leading and lagging strands.
- •Section VIII Molecular mechanisms of hormone action on target cells. Biochemistry of hormonal regulation
- •Examples of Krok 1 tests
- •78. For analgesia, a certain substance which imitates the physiological properties of morphine but is synthesized inside the human brain can be used. Name this substance.
- •80. A patient suffering from rheumatism was administered glucocorticoid therapy. What changes in carbohydrate metabolism in liver can be expected?
- •88. In blood of a patient a hypercalcemia, hypophosphatemia, in urine – hyperphosphaturia is observed. What is a possible cause of this state?
- •90. In 13 years old girl a hypotension and polyuria is observed. Preliminary diagnosis – diabetes insipidus. It is caused by deficiency of:
- •93. Signaling via prostanoids begins by interaction of the prostanoid with its receptor. The receptor involved is usually located in which part of the cell?
- •Clinical cases and Situational tasks
- •97. In 13 years old girl a hypotension and polyuria is observed. Preliminary diagnosis – diabetes insipidus. Which hormone deficiency can cause this disease?
- •99. The thyroid hormones t3 and t4 are synthesized in the follicular cells of the thyroid gland. From which of the following essential amino acids are the thyroid hormones synthesized?
- •101. Name types of signalling:
- •Section IX Biochemistry of the nervous tissue
- •С. Ketone bodies
- •24. What compound may be used by the cns cells after extensive physical exercises and prolonged starvation?
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •114. Describe the structure of a synapse and explain how it operates?
- •Section X Biochemistry of the Muscular tissue
- •D. Glycogenolysis in muscles
- •С. Fatigue faster compared to the red fibers
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XI Biochemistry of nutrition
- •1. Note substance, which activates pepsinogen to pepsin:
- •2. Chose the enzyme which plays an important role in production of hydrochloric acid by parietal cells of gastric mucosa glands:
- •3. Which of the following is not a function of the pancreas?
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •62. The clinical and laboratory examination of the patient evaluated the presence of the lactic acid in his gastric juice. What does it indicate? What should be recommended to the patient?
- •69. Discribe the mechanism of hydrochloric acid production shown at the picture:
- •Section XII Functional role of water soluble and fat soluble vitamins in metabolism and providement of cell functions
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •100. A deficiency in thiamine (vitamin b1) would most likely lead to which clinical manifestations?
- •Section XIII Biochemistry and pathobiochemistry of blood
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •89. The blood clotting cascade in humans is represented in the picture below. Using this scheme answer the following questions:
- •Section XIV Functional and clinical biochemistry of liver tissue. Biotransformation of xenobiotics and endogenous toxic compounds
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XV Water and mineral metabolism
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XVI Functional role of kidneys in urinogenesis. Normal and pathological constituents of urine
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XVII Biochemical constituents of connective tissue
- •Examples of Krok 1 Tests
- •Clinical cases and Situational tasks
- •34. Patient with burn disease is at the risk of formation of blood clots in blood vessels. What glycosaminoglycan may be used to prevent formation of blood clots?
- •Section XVIII Biochemistry of saliva and tooth tissue
- •Examples of Krok 1 tests
- •Clinical cases and Situational tasks
- •Section XIX. Biochemical reactions
- •References:
Clinical cases and Situational tasks
143. Biuret reaction became negative after a while of proteins hydrolysis. What changes in the protein it specifies?
Answer: The negative biuret reaction shows that there is no native protein and indicates on the completion of hydrolysis.
143. The positive reaction with sulfosalicylic acid in urine of a patient was observed. 0,253 % of protein was detected. What does it mean? What consequences in the body can cause this condition?
Answer: The positive reaction with sulfosalicylic acid indicates on the presence of a protein in urine, and it could be caused by kidney diseases. This state can cause hypoproteinemia, the decrease of the oncotic preassure and development of edema.
144. What is molecular weigh of glutathione, if the weigh percent of sulfur in it is equal 10,42 %? What is the biological role of glutathione?
Answer. The molecular weigh of glutathione can be calculated according to proportion:
100 g of glutathione contains 10,42 g of sulfur
х g ------------------------ 32 g of sulfur
х = 307 g of glutathione
Glutathione serves as a reductant; is conjugated to drugs to make them more water soluble; is involved in amino acid transport across cell membranes (the g-glutamyl cycle); is a substrate for the peptidoleukotrienes; serves as a cofactor for some enzymatic reactions and as an aid in the rearrangement of protein disulfide bonds.
145. In a patient 10 g of urine per day is excreted. Evaluate this result.
Answer: The increased content of urea in urine can be caused by negative nitrogen balance. There is a nett loss of body protein. It reflects either a response to trauma or infection, or an intake that is inadequate to meet the need to replace tissue proteins that are turning over.
146. Laboratory analysis of the urine of a six-day infant displayed excessive concentration of phenylpyruvate and phenylacetate. Metabolism of what amino acid is disturbed in the body of this child?
Answer: Excessive concentration of phenylpyruvate and phenylacetate indicates on the development of phenylketonuria, which is an autosomal recessive metabolic genetic disorder characterized by a mutation in the gene for the hepatic enzyme phenylalanine hydroxylase, rendering it nonfunctional. This enzyme is necessary to metabolize the amino acid phenylalanine to the amino acid tyrosine. When phenylalanine hydroxylase activity is reduced, phenylalanine accumulates and is converted into phenylpyruvate (also known as phenylketone), which is detected in the urine.
147. An 81/2-month-old infant was admitted to the hospital in a coma and a temperature of 39.4°C (102.9°F). His pulse was elevated, his liver was enlarged, and an electroencephalogram was grossly abnormal. Since the infant could not retain milk given by gavage feeding, intravenous glucose was administered. He improved rapidly and came out of the coma in 24 hours. Analysis of his urine showed abnormally high amounts of glutamine and uracil, which suggested a high blood ammonium ion concentration. The laboratory confirmed this. Considering the data, which enzyme may be defective in this patient?
Answer: The patient exhibits signs of a defect in the urea cycle. The presence of elevated uracil in addition to ammonia and glutamine points to an accumulation of carbamoyl phosphate. If ornithine transcarbamoylase is deficient, carbamoyl phosphate will accumulate in the mitochondria and leak into the cytosol, providing the starting compound for the synthesis of uracil.
148. A newborn male infant was diagnosed as having phenylketonuria (PKU), and immediately placed on diet low in phenylalanine (Phe); careful compliance with the diet and frequent monitoring of the patient’s plasma Phe level resulted in the level being maintained at the lower limit of the normal range. The patient appeared to be developing normally until 4 months of age, when he developed truncal hypotonia and spasticity of the limbs. Despite being on a low-phenylalanine diet, at 5 months the patient had several grand mal (epileptic) seizures. After an abnormal Phe-loading test, the patient’s urine was found to have a markedly elevated urinary biopterin concentration. Which of enzymes is most likely deficient in this patient?
Answer: The patient, despite being put on a low-Phe diet, exhibits neurologic problems resulting from an inability to synthesize catecholamine and indoleamine neurotransmitters. This is caused by a deficiency in dihydropteridine reductase (DHPR). DHPR regenerates tetrahydrobiopterin (BH4), which is oxidized to dihydrobiopterin by phenylalanine hydroxylase, as well as tyrosine hydroxylase and tryptophan hydroxylase (tryptophan 5-monooxygenase). If phenylalanine hydroxylase were deficient, a diet low in Phe would alleviate the effects. Since the urinary biopterin concentration is elevated, a deficiency in GTP cyclohydrolase I is eliminated because that is an enzyme in the biosynthetic pathway of BH4. Phe hydroxylase, Tyr hydroxylase, and Trp hydroxylase activities are low because of a lack of BH4.
149. A 1-year-old girl is brought to her pediatrician’s office with concerns about her development. The mother reports that the baby is not achieving the normal milestones for a baby of her age. She also reports an unusual odor to her urine and some areas of hypopigmentation on her skin and hair. On exam, the girl is noted to have some muscle hypotonia and microcephaly. The urine collected is found to have a “mousy” odor. What is the most likely diagnosis? What is the biochemical basis of the hypopigmented skin and hair?
Answer: Likely Diagnosis: Phenylketonuria (PKU). Biochemical basis of hypopigmentation: phenylalanine is competitive inhibitor of tyrosinase (key enzyme in melanin synthesis) Elevated phenylalanine can be caused by a variety of different enzyme deficiencies resulting in impaired conversion of phenylalanine to tyrosine. The most common deficiency is in phenylalanine hydroxylase (autosomal recessive) resulting in the classic picture of PKU. Two other enzyme deficiencies leading to PKU include dihydropteridine reductase and 6-pyruvoyl-tetrahydropterin synthase, an enzyme in the biosynthetic pathway of tetrahydrobiopterin. With PKU, the baby appears normal at birth but then fails to reach normal developmental milestones. If unrecognized, the child will develop profound mental retardation and impairment of cerebral function. A mousy odor of the skin, hair, and urine can often be detected clinically. Treatment consists of dietary modifications with limitation of phenylalanine intake and supplementation of tyrosine. The diagnosis of PKU and initiation of diet modification needs to be implemented prior to 3 weeks of age to prevent mental retardation and the other classic signs of PKU.
150. A 1-year-old girl presents at your clinic the day after you saw the 3-month-old boy. The symptoms are the same so you order a test on phenylalanine hydroxylase to confirm your diagnosis of phenylketonuria. To your surprise the phenylalanine hydroxylase activity is well within the normal range. Which of enzymes might you check next to support your diagnosis?
Answer: The correct response is dihydropteridine reductase. This enzymereduces dihydrobiopterin to tetrahydrobiopterin the obligate electron donor for phenylalanine hydroxylase. Tyrosinase is the first enzyme on the pathway to melanin. Dopamine hydroxylase and tyrosine transaminase are enzymes on other tyrosine metabolic tracts. Homogentisic acid oxidase is an enzyme on the pathway of tyrosine to fumarate and acetoacetate.