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Platelet disorders 263
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450
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Chapter19
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alloantigens
The molecular basis ofblood cell
Winnie Chong1, Louise Tilley2 and Colin Brown
1
Histocompatibility and Immunogenetics Service Development Laboratory, NHS Blood and Transplant, London, United Kingdom
2
International Blood Group Reference Laboratory, NHS Blood and Transplant, Bristol, United Kingdom
3
Histocompatibility and Immunogenetics Laboratory NHS Blood and Transplant, Colindale, London, United Kingdom
4
King’s College London, Faculty of Life Sciences & Medicine, London, United Kingdom
Introduction, 267 The major histocompatibility complex, 268 Post- transfusion purpura, 275 Platelet refractoriness, 275 Neonatal alloimmune thrombocytopenia, 276 Neonatal alloimmune neutropenia,
280
Introduction
Transfusion­Red blood cell antigens and molecular typing, 280 Hemolytic disease of the fetus and newborn, 280 Conclusions, 283 Further reading, 283
by maternal blood cell alloantibodies may lead to the devel-
3,4
related acute lung injury, 280
opment of immune- mediated anemia, thrombocytopenia, or
Advances in molecular techniques have been pivotal in improving our knowledge of the structure and function of blood cell antigens that were originally defined using serologi­cal techniques when studying the immune responses follow­ing transfusion, transplantation, and pregnancy. Many blood cell membrane determinants show allelic variation, which can elicit the formation of alloantibodies. In nearly all transfusion situations and pregnancies, the recipient’s immune system is challenged by blood cells mismatched for multiple alloantigen systems, but alloantibodies are only formed by a subset of recipients. Red cell alloantibodies are detected in 1–1.5% of pregnant women and in 2–3% of transfused individuals and can increase significantly in multi- transfused patients. The HLA alloantigens are more immunogenic than those of the red cells, and 15–25% of multiparous women and 30–40% of patients on long- term prophylactic platelet transfusions are positive for HLA class I antibodies.
Alloantigens were initially defined as polymorphic mem­brane determinants identified by polyclonal alloantibodies in serum samples from alloimmunized patients or pregnant women, but the molecular basis of most alloantigens have now been resolved and DNA-
based techniques are more commonly used to characterize alloantigen polymorphisms. Alloantigens can be categorized as those shared by all blood cells, for example HLA class I, and those unique to one blood cell type such as Rh on red cells and human platelet antigen (HPA) on platelets (Table19.1). When expression is limited to one type of blood cell, destruction of cells in the newborn
neutropenia of the newborn. In contrast, HLA class I alloan­tibodies do not cause cytopenias in the newborn but may compromise the effectiveness of platelet transfusions, com­plicate organ transplantation, cause febrile non- hemolytic transfusion reactions, or play a key role in the initiation of transfusion- related acute lung injury and occasionally delay engraftment in hemopoietic stem cell transplantation.
The formation of alloantibodies after an incompatible chal­lenge in the form of blood transfusion is more the exception than the rule. In contrast to our detailed understanding of the molecular basis of blood cell alloantigens, we remain relatively ignorant about the mechanism of non- responsiveness. We have learned from animal experiments that restriction in the ability to mount an immune response is largely controlled by genes of the major histocompatibility complex (MHC) or HLA. However, the reason why, for example, some 25% of RhD- negative individuals fail to mount an anti- D response on repeated challenges with RhD- positive red cells remains elu­sive. An exception to this is our detailed understanding of the immune response against the HPA- 1a alloantigen on platelets. There is a near- complete restriction on the ability to form HPA- 1a antibodies by the HLA class II allele DRB3*01 : 01. However, except for this example, our ability to identify the genes controlling the risk of alloimmunization remains lim­ited and further research is needed to identify the genetic basis of this variability in responsiveness.
This chapter reviews the recent developments in the molec­ular aspects of blood cell alloantigens and highlights their
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267
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Table19.1 Antigen expression onperipheral blood cells
Antigens Erythrocytes Platelets Neutrophils B lymphocytes T lymphocytes Monocytes
A, B, H + I + + + + + + +
*
Rh K + + + HLA class I /(+) + + + + + + + + + + + + + + + HLA class II /+ + +† + + + /+ + +† + + + GPIIb/IIIa + + + (+)‡ GPIa/IIa + + + + + GPIb/IX/V + + + CD109 (+)/+ +† ()/+ +† (+) FcγRIIIB (CD16b) + + + −/+ + +§*% CD177 + + +# − CTL2 ? + + + + +$ + +$ ? CD11b + CD11a + + + +
+, + +, + + + Level of antigen expression in increasing order. (+) Weak expression. ? Not known. * Non­‡GPIIIa in association with an alternative α chain αv. § When differentiated to macrophages expressing FcγRIIIA. # Expressed on subpopulation of neutrophils. & Also expressed on natural killer cells. $ B and T lymphocytes not separated. % Expressed on subpopulation of monocytes.
+ + + +/(+)
+ + +
impact on clinical management. Recognizing the wide variety of clinical conditions in which the HLA alloantigens play a role,
+ + +&
glycosylated. † On activated cells.
or gene conversion events can create novel combinations of mutations.
we have placed the main emphasis on complications of HLA class I alloimmunization in patients receiving prophylactic platelet transfusions. We also describe conditions where mater­nal antibodies with a specificity for the mismatched paternal antigens cross the placenta and cause the destruction of plate­lets (NAITP), neutrophils (NAIN), or erythrocytes (HDFN).
HLA antigens
The HLA antigens are a group of highly polymorphic cell surface molecules that play a central role in the induction and regulation of immune responses, and as such they are involved in self/non- self- recognition, tolerance, rejection of allografts and graft- versus- host disease. The genes coding
The major histocompatibility complex
for these molecules form part of a complex genetic system
called the MHC, located on the short arm of chromosome 6 The MHC is one of the most polymorphic genetic systems in humans. Mutations such as single- nucleotide polymorphisms (SNP) can give rise to variant molecules and recombination,
(Figure19.1). The HLA region spans a distance of approxi-
mately 4000 kb and is divided into HLA class I, class II, and
class III genes. Class III includes a group of non- MHC genes
DP
B2 A2 B1A1
Figure19.1 Human Major Histocompatibility Complex (MHC) highlighting the HLA genes. The human MHC is located on the short arm of chromosome 6, spanning a region of approximately 8 Mb and can be subdivided into three main regions. The MHC class III subregion does not contain HLA genes.
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MHC-class II
DQ
B2 A2 B3 B1 A1
HLA class II genes HLA class II genes pseudogenes
DR
B1 B2 B5 B3 B4 A
MHC-class III
HLA class I genes HFE
MHC-class I
BC A Hfe
The molecular basis ofblood cell alloantigens 269
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coding for proteins with various immunological functions, such as the complement factor 4 and tumor necrosis factor (TNF)- α.
The development of recombinant DNA technology has led to an increased understanding of the genetic complexity, structure, and function of the HLA genes and molecules.
HLA class I genes
The HLA class I genes have been classified according to their structure and function as classical and non- classical, or class Ib genes. The classic HLA class I genes, HLA- A, HLA- B, andHLA- Cw, code for heterodimers formed by a heavy (α) chain of approximately 43 kDa, non- covalently linked to the
β2- microglobulin light chain of 12 kDa. The latter is coded for
by a gene located outside the HLA region on chromosome 15. The extracellular portion of the α chain has three domains (α1, α2, and α3) encoded by exons 2, 3, and 4, respectively. Each domain is approximately 90 amino acids in length. The trans­membrane and cytoplasmic domains are encoded by exons 5, 6, and 7, respectively. The β2- microglobulin, which confers stability on the molecule, is non- covalently linked to the α3 domain (see Figure19.2(a)).
The α1 and α2 domains are the most polymorphic regions of these molecules and form a groove consisting of two α helices, with an antiparallel- running β- pleated sheet form­ing the floor of the groove. This groove, which is approxi­mately 2.5 nm long and 1 nm wide, can accommodate a variety of antigen- derived peptides of about 8–10 amino acids to be presented to T cells. In addition to the classical HLA class I genes, the non- classical HLA class I genes are also located in this region. They include HLA- E, HLA- F, and HLA- G, and their exon/intron organization is similar to that of the classical class I genes, but they have a more restricted polymorphism. The HLA class I genes are expressed on most tissues and blood cells, including T and B lymphocytes and platelets (Table 19.1). The non- classical class I genes HLA-
E and HLA- F are expressed on most tis­sues tested so far, whereas HLA- G has so far only been detected on trophoblasts and monocytes.
Two MHC class I chain- related genes (MIC- A and MIC­B), located centromeric to HLA- B, have been described. Unlike the classical and non- classical HLA class I, MIC genes do not require binding to the β2- microglobulin or peptide in order to be expressed on the cell surface. So far, MIC expression has been detected on freshly isolated endothelial cells, fibroblasts, keratinocytes, and monocytes. They have also been found to be expressed on intestinal epi­thelial cells as a result of stress, and on a variety of tumors of epithelial origin.
HFE is another non- classical class I gene, located 4 Mbtelomeric of HLA- A. This gene has been found to be associated with the development of hereditary
hemochromatosis (HH). A single- point mutation, 845A, replacing cysteine with tyrosine at position 282 (C282Y) is found in over 90% of HH patients in the UK. The other two mutations, replacing histidine by aspartate at amino acid position 63 (H63D) and serine by cysteine at amino acid 65 (S65C), appear to be associated with milder forms of HH. This gene does not have a direct immune function as it has lost the ability to bind antigenic peptides due to closure of the antigen- binding groove. However, since HFE can bind to the transferrin receptor, and in this way, regulate iron uptake and availability, it is possible that HFE may indirectly be involved in the regulation of immune responses.
HLA class II genes
The HLA class II genes DR, DQ, and DP are all located within the HLA class II region. There is one non­polymorphic DRA and nine highly polymorphic DRB genes, of which DRB2, DRB6, and DRB9 are pseudogenes. These genes code for heterodimers formed by an α and a β chain both encoded by genes within the MHC. The extracel­lular portion of these molecules has two domains (α1 and α2 and β1 and β2) encoded by exons 2 and 3 of each gene, respectively. The α1 and β1 domains form the peptide­binding groove (see Figure19.2(b)).
The number of DRB genes expressed in each haplotype varies depending on the DRB1 allele expressed; for example, HLA DRB1*01, DRB1*01 : 03, DRB1*08, and DRB1*10hap­lotypes only express the DRB1 gene. DRB1*15 and DRB1*16 haplotypes additionally express the DRB5 gene, which codes for the DR51 product. The HLA DRB1*03 : 01 (DR17), DRB1*03 : 02 (DR18), DRB1*11, DRB1*12, DRB1*13, and DRB1*14haplotypes also express the DRB3 genes, which code for the DR52 specificity, while the HLA DRB1*04, DRB1*07, and DRB1*09 alleles also express the DRB4 gene, which encodes the DR53 product. There are a few exceptions to this gene distribution; for example, a DRB5 gene has been found linked to a DRB1*01haplotype, and null DRB5 and DRB4 genes have been identified.
In contrast, there are two DQA and three DQB genes of which only A1 and B1 are expressed, and both are poly­morphic. Similarly, there are two DPA and two DPB genes of which only DPA1 and DPB1 are expressed and are poly­morphic. More than 37,000 HLA alleles have been named in April 2023 (http://hla.alleles.org/nomenclature/index. html).
Other HLA-
related genes located within the MHC class II region include LMP2, LMP7, TAP1, and TAP2, which are involved in the transport and processing of peptides pre­sented by class I molecules, and the HLA DMA, DMB, DOA, and DOB genes, which participate in the loading of peptides in HLA class II molecules.
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270 Molecular Hematology
Immunoglobulin-
Transmembrane
Exon 2 Exon 3
(B)
Immunoglobulin-
Transmembrane
sequences
sequence
cytoplasmic
2
4
(A)
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Peptide-
binding
region
like region
region
Cytoplasmic
region
Class IA
Peptide-
binding
β2–m
Regulatory
α
1
Leader
α
1
α
2
S
S
N
S
S
C
Exon
NN
S
S
C
S
α
3
P P P
Exon3Exon
β
1
S
3'UT
Transmembrane and
tively expressed on B lymphocytes, monocytes, and dendritic cells, and on activated T lymphocytes and granulocytes (Table19.1). HLA class II expression can also be induced on
β
2
Papain cleavage sites
Exon 3 Transmembrane and
like region
Papain cleavage
region
Cytoplasmic
region
Class IIA
Class IIB
α
2
sites
Regulatory
sequences
S
S
C
Leader
sequence
S
S
C
Exon 2
The HLA class II genes (DR, DQ, and DP) are constitu-
Figure19.2 (A) Schematic presentation of HLA
covalent association between the
3'UT
cytoplasmic
classI. The non­HLA class I protein (with three immunoglobulin­like domains, α1, α2, and α3) and β2- microglobulin (β2- m) is shown. The three α domains are encoded by three exons of the HLA class IA gene on chromosome 6. (B) Schematic presentation of HLA class II. The α and β chains of the HLA class II protein (each with two distinct immunoglobulin­like domains, α1 and α2, and β1 and β2) are non- covalently associated. Both domains of each chain are encoded by their respective exons of the α and β class II genes on chromosome 6.
non- hematopoietic cells such as fibroblasts and endothelial cells, as the result of activation or by the effect of certain inflammatory cytokines, such as interferon (IFN)- γ and TNF- α.
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The molecular basis ofblood cell alloantigens 271
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Function
The HLA molecules play a key role in the induction and regulation of the immune response. Both the phenomenon of MHC restric­tion and the development of tolerance, learnt as T cells pass through the thymus, result in the selection of a T- cell repertoire that will form the basis of an individual’s capacity to respond to antigens. HLA class I molecules are primarily but not exclusively involved in the presentation of endogenous antigens, such as viral peptides, to CD8+ cytotoxic T cells, whereas HLA class II mole­cules present primarily, but not exclusively, exogenous, such as bacterial, antigenic peptides to CD4+ helper T cells. These cells, once activated, can initiate and regulate a variety of processes lead­ing to the maturation and differentiation of cellular and humoral effector cells, including the secretion of cytokines. The presenta­tion of antigenic peptides is a highly regulated process and requires fine interaction between the antigenic peptide, the antigen- binding groove of the HLA molecules, and the T- cell receptor. Allelic vari­ation of the HLA molecules can profoundly affect the ability to present certain peptides because of the presence or absence of criti­cal contact residues in the peptide- binding groove.
HLA molecules on donor cells loaded with donor- derived peptides can also be recognized directly by T cells of the host by a mechanism called allorecognition. Two pathways of allorecognition, direct and indirect, have been identified, both of which lead to the strong alloimmunization seen in patients receiving blood transfusions or a solid organ or bone marrow/stem cell transplantation.
More recently, it has been shown that both classical and non- classical HLA class I molecules interact with two func­tionally distinct types of receptors, inhibitory and activating, present in natural killer (NK) cells. These receptors belong to two families, the immunoglobulin superfamily, also called killer immunoglobulin receptors (KIRs), and the C- type lectin superfamily CD94, which can covalently assemble with sev­eral members of the NKG2 family. The KIRs interact with products of the HLA- A, - B, - Cw, and - G loci, whereas CD94­NKG2 recognize the non- classical HLA- E molecule present­ing peptides derived from several HLA class I, A, B, or C alleles and from HLA­ognized by receptors present on both NK and γδ T cells.
Thus, HLA molecules have become increasingly relevant in a variety of clinical situations, such as susceptibility to cer­tain autoimmune and infectious diseases and in solid organ and stem cell transplantation and blood cell alloimmuniza­tion. With regard to the latter, two examples will be dis­cussed: refractoriness for prophylactic platelet transfusion by HLA alloimmunization and HLA class II restriction of the formation of anti- HPA- 1a antibodies.
G. MIC- A and MIC- B gene products are rec-
alloantigens of the HLA system has been both a technical and clinical challenge. It is well­molecular techniques, such as high- resolution typing by next­generation sequencing, is contributing to improved outcome in transplant patients. The following sections review the cur­rent molecular techniques used to define alleles of the HLA genes, which can be applied to other blood cell alloantigens.
established that the use of modern
Molecular typing techniques
Initially, the detection and characterization of the HLA mole­cules and polymorphisms was carried out using serological and cellular techniques. The rapid development of DNA- based molecular techniques has enabled detailed analyses of these molecules at the nucleotide level. The result of these analyses has shown the existence of shared nucleotide sequence motifs between alleles of the same and/or different loci. Similarly, it has been shown that there are certain locus- specific nucleotide sequences in both the coding regions (exons) and the noncod­ing regions (introns) of the various genes.
DNA sequencing of many HLA alleles has demonstrated that many of the important SNP that define each HLA allele are located in exons 2 and 3 of HLA class I and exon 2 of HLA class II molecules. These exons code for the distal membrane domains of the HLA molecules, which form the peptide- binding groove (Figure19.2(a) and (b)). Based on this information, several tech­niques have been developed to identify these polymorphisms using polymerase chain reaction (PCR). These include HLA typ­ing using reverse PCR- SSOP (sequence- specific oligonucleotide probes), PCR- SSP (sequence- specific primers), sequencing­based typing (SBT), and next- generation sequencing (NGS).
PCR- SSP
This technique involves the use of sequence- specific primers in the PCR. A single nucleotide mismatch at the 3- end of the allele- specific primer will prevent the polymerase from com­mencing DNA amplification. Therefore, amplification will only occur when the matched allele- specific primer anneals to the template DNA. The amplified DNA product is visual­ized by gel electrophoresis, and this allows the rapid identifi­cation of HLA alleles in individual samples, since the read­of this method is the presence or absence of an amplicon for which an allele- specific primer was used. Although this is a rapid technique, many PCR reactions would have to be set up for each sample to capture all the alleles of each gene. The target sequence of the alleles must be known, and novel unknown sequence variations may not always be detected. Using the PCR- SSP technique, it is possible to determine whether the detected sequences are in cis or in trans.
out
Identification of HLA gene polymorphism
The impact of molecular biological techniques on our ability to identify allelic variation of human genes is best exemplified by the HLA system. For decades, the enormous diversity of the
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Reverse PCR- SSOP
Reverse PCR- SSOP is a widely used technique, whereby the gene of interest is firstly amplified using generic primers complementary to highly conserved gene segments. The
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PCR product is labeled with biotin and, following denatura­tion and neutralization steps, the product is hybridized to oligonucleotide probes coupled to color beads. These oligo­nucleotide probes are designed to anneal to polymorphic sequences present in HLA alleles. Following the addition of - phycoerythrin- conjugated streptavidin (SAPE) to the reaction, the fluorescence signal is measured using a fluoro­analyzer. Reverse SSOP, is particularly amenable to batch testing a large number of samples rather than single sample testing.
Sequencing- based typing
Unlike PCR- SSP and reverse PCR- SSOP, which rely on uti­lizing known sequence polymorphisms for genotyping, sequencing techniques allow unknown novel variants in the gene sequences to be detected. This technology has enabled the discovery of new HLA alleles. SBT by dye- terminator Sanger DNA sequencing involves firstly denaturing the DNA to provide a single- strand DNA template. A sequencing primer is then added and the addition of a polymerase in the presence of excess nucleotides and fluorescently- labeled di­deoxy chain- terminating nucleotides (ddNTPs) enables extension of the template. Upon incorporation of a ddNTP chain terminator into the DNA strand, elongation is inter­rupted, leading to chain termination. Random incorporation of the chain terminators generates products of varying length. These products are then analyzed by capillary array electrophoresis and the sequence is read by the fluorescent signal generated by each product using an automated DNA sequencer.
Next generation sequencing
NGS or massively parallel sequencing offers high throughput scalability compared with SBT. Millions of fragments of DNA can be sequenced in parallel and individual samples can be ligated with identifiers to enable sequencing of hun­dreds of samples in a single sequencing run. The rapid advancement in next­has enabled an exponential increase in the rate of discovery of new HLA alleles.
HLA NGS involves firstly enriching for the region, gene, or exon of interest either by PCR amplification and pooling of the resulting amplicons, or by PCR- free hybridization cap­ture using specific probes. Two main approaches have been used in the application of NGS for the definition of HLA alleles. The first involves the amplification and sequencing of the exons containing the polymorphic positions of the HLA genes (exons 2 and 3 for HLA class I; A, B, and C and exon 2 for HLA class II; DRB1, DQB1, and DPB1). The second approach involves the amplification and sequencing of the whole gene of interest. The main advantage of this latter approach is that it allows the detection of polymorphisms in
generation sequencing technologies
all exons and introns of the relevant gene, thus reducing the number of HLA typing ambiguities obtained with the exon­based approach.
For short- read sequencing platforms, the amplification step is followed by the fragmentation of these amplicons and the ligation of adapters and unique indexes or identifiers, in order to prepare a DNA library. The fragmented and adapter­ligated products are then clonally amplified and sequenced. NGS generates hundreds of thousands of sequences, and sorting and aligning them to the reference genome can be extremely challenging. To achieve this, complex bioinfor­matic analysis algorithms have been developed.
Short- reading sequencing is currently the most used NGS method, providing high accuracy and high throughput capa­bility. However, sequencing read lengths are limited to approximately 600 bases (depending on the sequencing plat­form) and this has an impact on phasing between distal SNPs separated by large conserved intronic regions (Figure19.3). The result is ambiguous HLA genotyping results, and this is well- documented for HLA- DPB1 sequencing.
Long- read sequencing/third- generation sequencing
For long- read sequencing, the adapters and unique identi­fiers can be ligated directly to the full- length amplicons without the need for fragmentation. Long- read sequencing platforms are able to sequence the entire amplicon, which can be the length of an entire HLA gene. Two platform developers that currently provide this capability include Pacific Biosystems and Oxford Nanopore Technologies. The latter allows for both short and long- read sequencing and utilizes biological nanopores. These are embedded in a membrane with an electric current flowing through them. When a DNA molecule passes through the nanopore, the current is disrupted and the signal generated is decoded to determine a DNA sequence in real time. The large data out­puts generated from these long- read sequencing technolo­gies require significantly more computational power for bioinformatic analyses.
Long-
read sequencing resolves the issue of HLA phasing ambiguities seen with short- read sequencing and future HLA sequencing strategies will rely on advances in this tech­nology (Figure19.3).
DNA microarray genotyping
Sequencing is a process to investigate the whole sequence or gene, whereas genotyping is a process to investigate the vari­ation within a sequence, gene, or individual. Genotyping studies require prior knowledge of the sequence and com­monly targeted SNPs. Advancement in sequencing techniques and the availability of sequences of the genes cod­ing for blood cell surface molecules have facilitated the
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