
- •Introduction into biochemistry
- •General properties
- •Classification of proteins
- •Simple Proteins – representatives, properties and role
- •Globulins [g]
- •Histones (h) h are basic non value proteins. Localized in nucleus with mol. Mass (mm) 10000-20000 d. They contain of 30% diaminomonocarboxylic acids and have positive charge. Their iep is equal 10.
- •Table 1 “The properties of globular simple proteins”
- •Conjugated proteins
- •Table 2 Composition of the free (transport) lipoproteins in plasma of human
- •True gp Proteoglycans
- •Table 3 Chemical nature of glycosaminoglycans
- •Nucleoproteins (np)
- •Mononucleotides
- •Table 4 The composition and names of nucleosides, nucleotides and their phosphoric derivatives
- •Structure of dna Primary st. Of dna is a spirally one polynucleotides chain (pnc), the disposition of nucleotides in which determine all hereditary properties of organism.
- •Structure of rna
- •Enzymes
- •Mechanism of enzyme action
- •Factors influencing on enzyme activity
- •Enzyme inhibition
- •Classification of enzymes
- •III. Hydrolases
- •Bioenergetics
- •Table 6 Redox potential (rp)
- •Inhibition of oxidative phosphorylation.
- •The types of oxidation
- •Peroxidase’s type
- •Vitamins
- •Vitamin b12
- •Ascorbic acid (vitamin c)
- •Rutin, vitamin p (permeability) – bioflavonoids, capillaris’s strengthening
- •Fat soluble vitamins
- •Deficiency diseases
- •Vitamin k
- •Carbohydrates metabolism. Digestion and absorption of carbohydrates. Intermediate metabolism of carbohydrates
- •Carbohydrates metabolism. Intermediate and final stages of carbohydrates metabolism
- •Lipids of food, their importance, digestion, absorption. Micelles and chylomicrons. The role of intestinal wall, liver, lungs and adipose tissue in lipid metabolism
- •Lipids metabolism. Lipoproteins, their composition and role. The pathways of usage of glycerol and free fatty acids in cells
- •“Pathologic chemistry of lipid’s metabolism”
- •The intermediate Metabolism of Simple Proteins (part 1): the conversion of amino acids in tissues. The formation and usage of Creatine. The decarboxylation of amino acids, the role of biogenic amines
- •Simple proteins metabolism. The pathways of formation and detoxification of ammonia
- •Conjugated proteins metabolism
- •Biochemistry of liver
- •Classification of hormones
- •General properties of hormones
- •Hormones of epiphysis Melatonin
- •Hypothalamic hormones
- •Vasopressin (antidiuretic hormone)
- •Oxytocin
- •Hormones of hypophysis
- •Hormones of pancreas
- •Hormones of adrenal glands
- •Sexual hormones are formed in gonads.
- •Estrogens
- •If the pregnancy beginns so development of embryo occurs; if the pregnancy doesn’t occur so degeneration of yellow body proceeds and mensis beginns again Androgens
- •Biochemistry of blood plasma
- •Table 10 a main biochemical indices in the blood plasma (serum)
- •Functions and diagnostic importance of some fractions of proteins Table 11 Biologic and clinic importance of blood serum proteins
- •Blood clotting system
- •Blood dissolution system
- •Complement system
- •Inorganic constituents of blood plasma. Water-mineral metabolism. Acidosis and alkalosis
- •Acidosis and alkalosis Table 12 Acidosis and alkalosis
- •Water metabolism
- •Biochemistry of erythrocytes
- •Metabolism in erythrocytes
- •The physiological and pathological derivatives of hemoglobin and their spectra of taking up
- •Biochemistry of white blood cells
- •Biochemistry of kidneys
- •Normal and pathologic constituents of urine. Urine analysis – its clinical significance Composition of normal urine
- •Physical examination
- •I. Volume
- •The term polyuria implies an increased volume of urine
- •II. Colour
- •III. Specific Gravity
- •Clinical significance
- •IV. Acidity and pH
- •Clinical Significance
- •V. Odor
- •Causes of abnormal odor
- •VI. Turbidity
- •Types of turbidities
- •Inorganic constituents
- •Chlorides
- •Clinical significance
- •Organic constituents
- •Clinical significance
- •II. Ammonia
- •Clinical significance
- •Increase
- •Uric acid
- •Clinical significance
- •Clinical aspect
- •Creatinine and creatine
- •Oxalic Acid
- •Clinical significance
- •Aminoacids
- •Aminoacidurias
- •Abnormal constituents
- •Proteins
- •Proteinuria
The physiological and pathological derivatives of hemoglobin and their spectra of taking up
There are next physiological derivatives of hemoglobin: HbO2 (oxyhemoglobin) and HbCO2 (carbhemoglobin). Oxyhemoglobin has 2 dark lines in yellow-green part of spectrum. HbCO2 hasn’t got own spectrum because CO2 joins to globin of hb. Its spectrum is 1 line in yellow-green part of spectrum (as in Hb).
There are next pathological derivatives of Hb: HbCO (carboxyhemoglobin), methoxyhemoglobin (MtHb), glycosylated hemoglobin (HbGlc)
HbCO is formed under influence of CO. Its spectrum is 2 dark lines in yellow-green part of sun spectrum, but in comparison with HbO2 this hemoglobin isn’t reduced under influence of Stock’s reagent.
Methoxyhemoglobin is formed under action of oxidants. The 3-rd valency in iron of heme appears to which the OH group joins.its spectrum is 3 dark lines: 2 of them are in yellow-green part of sun spectrum and 1 line in red part of sun spectrum.
Glycosylated hemoglobin is formed due to binding of glucose to beta-chains of Hb. Formation of this hemoglobin occurs in long time hyperglycemia (more than 2-3 months), e.g in diabetes mellitus.
The pathological derivatives of hemoglobin are dangerous because they don’t function as transporters of oxygen and carbon dioxide.
Biochemistry of white blood cells
The peculiarities of metabolism in neutrophils
they have many lysosomes which contain proteinases such as collagenase, elastase, catepsin G and gelatinase
low level of oxidative phosphorylation that due to the lack of mitochondrions and high extent of glycolysis
high level of pentose phosphate’s cycle which gives NADPH2 used for formation of AFO
there is a specific enzyme myeloperoxidase that catalyzes the next reaction: H2O2 + H+ + Cl- HOCl (hypochloric acid) + H2O
they exrete defensive peptides consisting of 22-30amino acids
neutrophils have lysocyme (bactericidial agent)
neutrophils output the lactoferrin that is used for profilaxis of cancer and bacteriostatic agent
NADPH-oxydase is a specific enzyme that takes part in formation of AFO
Neutrophils output selectins and integrins
Neutrophils output activator of plasminogen (blood dissolution factor)
The role of neutrophils
They take part in acute inflammation response (AIR). AIR comprizes 3 stages:
Chemotaxis and adhesion
Respiratory explosion
Cleavage of antigenes
1 – chemotaxis is a gathering of neutrophils in inflammatory area. It occurs owing to selectins. Adhesion is a sticking of neutrophils to the vessels in inflammatory area due to the integrins
2 – respiratory explosion is an activation of all metabolic processes in neutrophils causing the distructruction of invaded antigenes. It accomplishes by migration of phagocytes from vessel and intensive formation of AFO
3 – cleavage of antigenes occurs due to proteinases of lysosomes
The concept of respiratory explosion
This phenomenon is characteristically for all phagocytes including neutrophils. Neutrophils are activated through specific reseptors which joined with G-protein and phospholipase C. the activation of Phospholipase C results in cleavage of phosphoinositoldiphosphate to inositoltriphosphate and DAG. ITP promotes releasing of calcium from endoplasmic reticulum. DAG activates protein kinase C that phosphorylates NADPH-oxydase. Beside of this the intake of calcium into cells from extracellular matrix occurs owing to G-Protein. Increase of calcium in cytosol of cells causes the assembleying of microtubules and actomyosin in neutrophils that results in migration of neutrophils to inflammatory area. The phosphorylation of NADPH-oxydase results in formation of AFO (see below). This accomplishes by intensive uptake of oxygen.
The formation of AFO
NADPH2 + 2O2 (under infl. Of NADPH-oxydase) NADP + 2O2• + 2H+
2O2• + 2H+ (under infl. Of SOD) H2O2 + O2
H2O2 + O2• •OH + -OH + O2
H2O2 + H+ + Cl- (under infl. Of myeloperoxidase) HOCl + H2O
Arg + NADPH2 + O2 (under infl. Of NO-synthase) NADP + NO• + Citrulline + H2O
NO• + O2 ONOO• (peroxinitrite that influences on DNA and causes mutations)
The functions and biochemical peculiarities of basophils, eosinophils and monocytes
Basophils: 1) output heparin and histamine; 2) complex antigene-antibody causes the degranulation of basophils (this a way of participation of them in allergy)
Eosinophils: 1) uptake cocci; 2) detoxification of histamine; 3) destroying of toxins and immune complexes; 4) cytotoxic action that means killing of gelmints; 5) participation in allergy
Monocytes: they are converted to macrophages in tissues – 1) recognition of antigenes and formation of immune response; 2) monokins stimulate lymphocytes; 3) proteins of complement system destroy immune complexes; 4) output of blood dissolution factors
The peculiarities of chemical composition and metabolism of lymphocytes
Lymphocytes are divided into B-, T- and N-lymphocytes. B-lymphocytes output antibodies. T-lymphocytes are subdivided into T-killers, T-supressors and T-helpers. T-killers and N-lymphocytes causes the lysis of antigenes. T-supressors inhibit the immune response.T-helpers activate immune reactions.
Table 13 Peculiarities of white blood cells
Feature |
B |
T |
Organells |
Many |
Few |
RNA |
Many |
Few |
DNA |
Few |
Many |
Lipoproteins |
Few |
Many |
Sialoproteins |
Absent |
Many |
True glycoproteins |
Many |
Absent |
Lipids |
Many |
Few |
The peculiarities of metabolism of lymphocytes
glycolysis prevails in B-lymphocytes; aerobic oxidation of glucose occurs in T-lymphocytes
low level of beta-oxidation due to the lack of lipids in B-lymphocytes and enzymes of this process in T-lymphocytes
lymphocytes don’t synthesize glucose, FFA and Gln
Gln need for function of lymphocytes: glutamine is used in starvation by other tissues and there is a lack of its in the body. it results in decrease of immune reactions
Intensive purine’s metabolism
Biochemistry of muscular tissue
Muscular tissue consists of 80% of water and 20% of dry part. Dry part consists of 18-19% of organic compounds and 1-2% of inorganic compounds. Organic compounds are proteins and extractive substances. Proteins of muscles are divided into myofibrilar, sarcoplasmic, stroma’s and nucleoproteins. Extractive substances are divided into nitrogen-containing and nitrogenless substances. Nitrogenless substances are lipids, glycogen and products of their metabolism and creatine, creatinine, anserine, carnosine, adenylic system (ATP, ADP, AMP).
Anserine and carnosine take part in relaxation of muscles, maintain pH in muscles, antioxidants and activate ATP-ase’s activity of myosin.
Myofibrilar proteins make up 50-55% from all proteins of muscles. They’re divided into:
contractory (Myosin, actin, actomyosin, phosphorylated caldesmon in smooth muscles only)
relaxatory (titin, dephosphorylated caldesmon in smooth muscles only)
regulatory (tropomyosin (Tm), troponin (Tn), myosinbinding protein, alfa-actinin, nebulin
function of which is unknown (desmin, dystrophin)
Sarcoplasmic proteins make up 30-35% of total proteins of muscles. They’re divided into specific and non-specific. Specific proteins are myoglobin and calcineurin. Non-specific proteins are enzymes (e.g. aldolase), myoalbumins, myoglobulins.
Myoglobin consists of globin (1 chain from 153 amino acids) and heme like heme of hemoglobin. Myoglobin transfers oxygen in myocytes: Mgb + O2 ↔ MgbO2. Myoglobin is a storage of oxygen in muscles and pigment of them.
Stroma’s proteins are collagen and elastin (10% from all proteins of muscles) repeat, please, properties of these proteins, see theme 2 “Simple proteins”
Nucleoproteins repeat, please, composition of NP and formulas of heme, ATP, ADP, AMP, Creatine, Creatinine, Creatine phosphate, nucleotides
Chemical base of muscular contraction (schematically)
Nerve impulseacetylcholinecalcium release into synaptic spacecalcium enters the myocytecalcium binds with troponin which is constituent of triple complex – Tn-A-M, during this interaction Tn is released from this complex and interacts with tropomyosinactin and Myosin forms an active complex named actomyosin under influence of potassiumunder action of magnesium actomyosin complex cleaves ATP to ADP+inorganic phosphate, releasing energy released energy is used for muscular contraction. Thus, the ATP supplying underlies the process of muscular contraction
The pathways of resynthesis of ATP (should be repeated calculation of ATP and formulas of creatine kinase)
1) creatine kinase’s reaction
2) glucose
3) TAG
4) ketone bodies
amino acids
crush-way: adenylylkinase’s reaction: 2ADP↔ATP + AMP
The peculiarities of contraction of smooth muscles
4Ca-calmodulin dephosphorylated kinase of light chains of myosin phosphorylated light chains of myosin contraction
The relaxation of muscles
NO cGMP PKGphosphorylated kinase of light chains of myosin (is inactive) dephosphorylated light chains of myosin relaxation
The peculiarities of myocardium
ketone bodies are main energetic source
creatine phosphate is a source of energy
aerobic glycolysis only