- •Introduction into biochemistry
- •General properties
- •Classification of proteins
- •Simple Proteins – representatives, properties and role
- •Globulins [g]
- •Histones (h) h are basic non value proteins. Localized in nucleus with mol. Mass (mm) 10000-20000 d. They contain of 30% diaminomonocarboxylic acids and have positive charge. Their iep is equal 10.
- •Table 1 “The properties of globular simple proteins”
- •Conjugated proteins
- •Table 2 Composition of the free (transport) lipoproteins in plasma of human
- •True gp Proteoglycans
- •Table 3 Chemical nature of glycosaminoglycans
- •Nucleoproteins (np)
- •Mononucleotides
- •Table 4 The composition and names of nucleosides, nucleotides and their phosphoric derivatives
- •Structure of dna Primary st. Of dna is a spirally one polynucleotides chain (pnc), the disposition of nucleotides in which determine all hereditary properties of organism.
- •Structure of rna
- •Enzymes
- •Mechanism of enzyme action
- •Factors influencing on enzyme activity
- •Enzyme inhibition
- •Classification of enzymes
- •III. Hydrolases
- •Bioenergetics
- •Table 6 Redox potential (rp)
- •Inhibition of oxidative phosphorylation.
- •The types of oxidation
- •Peroxidase’s type
- •Vitamins
- •Vitamin b12
- •Ascorbic acid (vitamin c)
- •Rutin, vitamin p (permeability) – bioflavonoids, capillaris’s strengthening
- •Fat soluble vitamins
- •Deficiency diseases
- •Vitamin k
- •Carbohydrates metabolism. Digestion and absorption of carbohydrates. Intermediate metabolism of carbohydrates
- •Carbohydrates metabolism. Intermediate and final stages of carbohydrates metabolism
- •Lipids of food, their importance, digestion, absorption. Micelles and chylomicrons. The role of intestinal wall, liver, lungs and adipose tissue in lipid metabolism
- •Lipids metabolism. Lipoproteins, their composition and role. The pathways of usage of glycerol and free fatty acids in cells
- •“Pathologic chemistry of lipid’s metabolism”
- •The intermediate Metabolism of Simple Proteins (part 1): the conversion of amino acids in tissues. The formation and usage of Creatine. The decarboxylation of amino acids, the role of biogenic amines
- •Simple proteins metabolism. The pathways of formation and detoxification of ammonia
- •Conjugated proteins metabolism
- •Biochemistry of liver
- •Classification of hormones
- •General properties of hormones
- •Hormones of epiphysis Melatonin
- •Hypothalamic hormones
- •Vasopressin (antidiuretic hormone)
- •Oxytocin
- •Hormones of hypophysis
- •Hormones of pancreas
- •Hormones of adrenal glands
- •Sexual hormones are formed in gonads.
- •Estrogens
- •If the pregnancy beginns so development of embryo occurs; if the pregnancy doesn’t occur so degeneration of yellow body proceeds and mensis beginns again Androgens
- •Biochemistry of blood plasma
- •Table 10 a main biochemical indices in the blood plasma (serum)
- •Functions and diagnostic importance of some fractions of proteins Table 11 Biologic and clinic importance of blood serum proteins
- •Blood clotting system
- •Blood dissolution system
- •Complement system
- •Inorganic constituents of blood plasma. Water-mineral metabolism. Acidosis and alkalosis
- •Acidosis and alkalosis Table 12 Acidosis and alkalosis
- •Water metabolism
- •Biochemistry of erythrocytes
- •Metabolism in erythrocytes
- •The physiological and pathological derivatives of hemoglobin and their spectra of taking up
- •Biochemistry of white blood cells
- •Biochemistry of kidneys
- •Normal and pathologic constituents of urine. Urine analysis – its clinical significance Composition of normal urine
- •Physical examination
- •I. Volume
- •The term polyuria implies an increased volume of urine
- •II. Colour
- •III. Specific Gravity
- •Clinical significance
- •IV. Acidity and pH
- •Clinical Significance
- •V. Odor
- •Causes of abnormal odor
- •VI. Turbidity
- •Types of turbidities
- •Inorganic constituents
- •Chlorides
- •Clinical significance
- •Organic constituents
- •Clinical significance
- •II. Ammonia
- •Clinical significance
- •Increase
- •Uric acid
- •Clinical significance
- •Clinical aspect
- •Creatinine and creatine
- •Oxalic Acid
- •Clinical significance
- •Aminoacids
- •Aminoacidurias
- •Abnormal constituents
- •Proteins
- •Proteinuria
Table 6 Redox potential (rp)
Enzymatic system |
RPv |
∆ RPv |
∆ E (kJ) |
Oxidative phosphorylation |
NAD-NADH2 FPFPH2 CoQCoQH2 CytbFe3+ CytbFe2+ CytcFe3+ CytcFe2+ Cytaa3Fe3+ Cytaa3Fe2+ O22O-- |
- 0.32
+ 0.08
+ 0.26
+ 0.29 + 0.82 |
0.24 0.08
0.08
0.18
0.03 0.53 |
44.4
33.3
102 |
~ ATP (≈33kJ/M)
~ ATP
~ ATP
|
In the living cells oxygen rarely takes part in direct oxidation of the substrates. In most cases, oxidation involves many steps. This is because molecular oxygen and most cell substrates differ too widely in energy level for these to react directly. This difference is decreased by means of various intermediate substances which can transfer hydrogen atoms or electron (look table of RP).
From this table it is clearly that the main respiratory chain in mitochondria proceeds from the NAD-linked dehydrogenase systems on the other hand, through FP and Cyt, to molecular oxygen on the other. Not all substrates are linked to the respiratory chain through NAD-specific dehydrogenases: some, because their redox potentials are more positive (eg, fumarate/succinate), are linked directly to FP dehydrogenases, which in turn are linked to the cytochromes of the respiratory chain.
Stages of biologic oxidation by the respiratory chain
formation of NADH2 in dehydrogenase reactions, f.e. malate + NAD oxaloacetic acid + NADH2 (in CAC)
formation of FADH2. FAD is a coenzyme for several enzymes termed flavoproteins (FP), f.e. succinic acid + FAD fumarate + FPH2 (FADH2)
transfer of 2 H atoms from NADH2 to FMN takes up these H atoms is itself converted to FMNH2 – NADH2 + FP (FMN) NAD + FPH2 (FMNH2), in this reaction enough energy is released to produce one mole of ATP from ADP and Pi;
in the next step FPH2 transfer 2H to coenzyme Q – FPH2 + CoQ FP + CoQH2
oxidation of CoQH2. Reduced CoQ can be converted to its oxidized form by losing the 2 H atoms but the released H atoms now splits into protons and electrons: CoQH2 CoQ + 2H++2ē. The 2 protons enter the mitochondrial pool of the H+ ions, while electrons are taken up by the respiratory pigments called cytochromes (Cyt).
The 1-st Cyt take part in the process is Cytb, 2 molecules of which are reduced by the 2 electrons released from CoQ: 2Cytb+++ + 2ē 2Cytb++
In the next stage the reduced Cytb passes its electron to the next member of the Cyt system to Cytc1. Sufficient energy is evolved in this reaction to produce 1 ATP from ADP and Pi:
2Cytb++ + 2Cytc1+++ 2Cytb+++ + 2Cytc1++ (~ATP). In this way Cytb gets ixidized, while Cytc1 gets reduced.
in the next stage Cytc1++ passes its lectron to Cytc+++ : 2Cytc1++ + 2Cytc+++ 2Cytc1+++ + 2Cytc++
Cytc++ now passes its electron to Cyta+++ converting it Cyta++: 2Cytc++ + 2Cyta+++ 2Cytc+++ + 2Cyta++ . Then Cyta++ passes its electron to the final member of Cyt system – to Cyta3+++ . on this stage sufficient energy is evolved to produce 1 ATP from ADP and Pi: 2Cyta++ + 2Cyta3+++ 2Cyta+++ + 2Cyta3++ (~ATP). It is showed that Cyta and Cyta3 occur as a complex termed Cyta-a3 complex or cytochromeoxidase, which is attached to a protein and ions Cu
Cyta3 is autooxidizable. 2 molecules of reduced Cyta3 take part in the final reaction in which the 2 hydrogen ions liberated in the body fluids from CoQH2 also participate: 2Cytaa3++ + 2H+ + ½ O2 2Cytaa3+++ + H2O. Functionally and structurally the components of the respiratory chain present in the inner mitochondrial membrane as 4 protein lipid respiratory chain complexes. These complexes have a definite spatial orientation in the membranes. Cytc is the only soluble Cyt and together with CoQ, seems to be a more mobile component of the respiratory chain connecting the fixed complexes
Nonphysiologic substrates can include in the different stages of biologic oxidation: succinate Cytb; ascorbate Cytb and Cytc; soluble Cytc (exogenous) Cytc
Oxidative phosphorylation
ADP is a molecule that captures in the form of high energy phosphate, some of the free energy released by catabolic processes. The resulting ATP passes on this free energy to drive those processes requiring energy. Thus, ATP has been called the energy “currency” of the cell.
Examination of intact mitochondria reveals: that when substrates are oxidized via a NAD-linked dehydrogenases and the respiratory chain, 3 mol of ADP to form 3 mol of ATP per ½ molof O2 consumed, i.e. the P/O ratio is 3. On the other hand, when a substrate is oxidized via a FP only 2 mol of ATP are formed, i.e. P/O=2. These reactions are known as oxidative phosphorylation at the respiratory chain level. Dehydrogenations in the pathway of catabolism of glucose in both glycolysis and CAC, plus phosphorulations at the substrate level, can now account for nearly 42% of the free energy resulting from the combustion of glucose captured in the form of high-energy phosphates. It is evident that the respiratory chain is responsible for a large proportion of total ATP formation. The concept of P/O coefficient, respiratory control
Coefficient P/O is a ratio of quantity of molecules of inorganic phosphate used on formation of ATP on each engaged oxygen atom. This coefficient may be equal 3 or 2. P/O is equal 3 when the BO beginns from NADH2. Then 3 points of conjugation of BO and OP. P/O is equal 2 when BO beginns from FPH2. Then 2 points of conjugation of BO and OP.
Respiratory control: OP controls the velocity of BO. This is property of undamaged mitochondrial membranes. In the presence of all components of BO, but in absence of ADP the velocity of BO is decreased. In a large amount of ADP and small content of ATP the velocity of BO is increased.
The relation between BO and OP can be proved due to usage of disconnectors, e.g. nitro-and galogenoderivatives of Phenols, some antibiotics, cyanides, CO, thyroxine, progesterone, these compounds disconnect relation between BO and OP. It is results in unusage of energy of BO on ATP formation (i.e., OP doesn't occur). All energy of BO is discharged as heat through perspiration.
