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  1. What kind of dye is used in microbiology? Name the methods of staining.

What is the reason of using them?

Types of Dyes

Not all specimens can be clearly seen under a microscope. Sometimes the spe­cimen blends with other objects in the background because they absorb and reflect approximately the same light waves. You can enhance the appearance of a specimen by using a stain. A stain is used to contrast the specimen from the background.

A stain is a chemical that adheres to structures of the microorganism and in effect dyes the microorganism so the microorganism can be easily seen under a microscope. Stains used in microbiology are either basic or acidic.

Basic stains are cationic and have positive charge. Common basic stains are methylene blue, crystal violet, safranin, and malachite green. These are ideal for staining chromosomes and the cell membranes of many bacteria.

Acid stains are anionic and have a negative charge. Common acidic stains are eosin and picric acid. Acidic stains are used to stain cytoplasmic material and organelles or inclusions.

There are two types of Stains: simple and differential. A simply stain has a single basic dye that is used to show shapes of cells and the structures within a cell. Methylene blue, safranin, carbolfuchsin and crystal vio­let are common simple stains that are found in most microbiology laboratories.

  • Dyes used as biological stains are typically organic salts comprising a colored ion and an uncolored ion. In a basic dye, the colored organic ion is positively charged, so it's drawn toward negatively charged substances. The cytoplasm of bacterial cells tends to soak up basic dyes. Acidic dyes, by contrast, contain a negatively charged organic ion that the bacterium's surface repels; these dyes tend to stain around the organism, creating a colored background against which the bacterium is transparent. Other dyes, like India ink, are pH-neutral.

Ziehl-Neelsen Stain

  • Due to the composition of their cell walls, some dyed bacteria are "acid-fast," meaning that they will not lose their color if exposed to a dilute acid. Mycobacterium tuberculosis, the bacterium that causes tuberculosis, is a prominent example. Staining a specimen with carbol fuchsin dye while heating it, decolorizing the sample with an acid, and then counterstaining it with another dye will reveal whether acid-fast bacteria are present. This procedure is called the Ziehl-Neelsen stain.

India Ink

  • This technique involves suspending microbes in saline solution, and then staining them with India ink. Under the microscope, the India ink is very dark; if a microbe has a gelatinous capsule, it will stand out plainly against this background. This is known as a negative stain, because rather than coloring the microbe, it colors the microbe's surroundings on the slide. This technique is particularly useful when working with certain fungi, especially Cryptococcus neoformans.

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