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Reactive Intermediate Chemistry

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788ARYNES

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43.The IR spectrum of 13 has been reinterpreted in favor of a bicyclic structure 18 based on B3LYP calculations: (a) B. A. Hess, Jr., Eur. J. Org. Chem. 2001, 2185; (b) B. A. Hess,

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Jr., Chem. Phys. Lett. 2002, 352, 75. Regarding this interpretation, it should be mentioned that the measured IR spectrum, Ref. 41, has not been reproduced correctly. Two additional bands were assigned to m-benzyne, which are unequivocally due to other species (cf. Ref. 42 and 44– 46).

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46.M. Winkler and W. Sander, in preparation.

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53.A similar reaction has been observed experimentally: (a) M. Chakraborty, C. A. Tessier, and W. J. Youngs, J. Org. Chem. 1999, 64, 2947. A photochemical C1C5 endiyne cyclization has recently been observed, but follows probably not a biradical mechanism via a fulvenediyl, but involves photoinduced electron transfer to the endiyne with subsequent cyclization of the radical anion: (b) I. V. Alabugin and S. V. Kovalenko, J. Am. Chem. Soc. 2002, 124, 9052.

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61.For example: (a) C. J. Cramer, J. Am. Chem. Soc. 1998, 120, 6261; (b) P. R. Schreiner, J. Am. Chem. Soc. 1998, 120, 4184; (c) R. Lindh, A. Bernhardsson, and M. Schu¨tz, J. Phys. Chem. A 1999, 103, 9913; (d) J. Gra¨fenstein, A. Hjerpe, E. Kraka, and D. Cremer, J. Phys. Chem. A 2000, 104, 1748; (e) G. B. Jones and P. M. Warner, J. Am.

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68.C. Koetting, W. Sander, S. Kammermeier, and R. Herges, Eur. J. Org. Chem. 1998, 799.

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70.T. D. Crawford, E. Kraka, J. F. Stanton, and D. Cremer, J. Chem. Phys. 2001, 114, 10638.

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75.The reactivity of endiynes towards cyclization is, to some degree, controlled by the distance of the terminal acetylenic carbons, cf. (a) P. Magnus, R. T. Kewis, and J. C. Huffman, J. Am. Chem. Soc. 1988, 110, 1626; (b) P. A. Carter and P. Magnus, J. Am. Chem. Soc. 1988, 110, 6921; (c) J. P. Snyder, J. Am. Chem. Soc. 1989, 111, 7630; (d) J. P. Snyder, J. Am. Chem. Soc. 1990, 112, 5367; (e) P. Magnus, S. Fortt, T. Pitterna, and J. P. Snyder, J. Am. Chem. Soc. 1990, 112, 4986; (f) M. F. Semmelhack, T. Neu, and

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80.H. H. Wenk and W. Sander, Chem. Eur. J. 2001, 7, 1837.

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83.M. Winkler and W. Sander, unpublished results.

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102.For reviews on neocarcinostatin cytostatics, see, for example: (a) H. Maeda, K. Edo, and N. Ishida, Eds., Neocarzinostatin: The Past, the Present and Future of an Anticancer Drug, Springer, Tokyo, 1997; (b) A. G. Myers and C. A. Parrish, Bioconjugate Chem. 1996, 7, 322; see also Ref. 7.

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105.(a) B. Engels and M. Hanrath, J. Am. Chem. Soc. 1998, 120, 6356; (b) P. R. Schreiner and M. Prall, J. Am. Chem. Soc. 1999, 121, 8615; (c) C. J. Cramer, B. L. Kormos, M. Seierstad, E. C. Sherer, and P. Winget, Org. Lett. 2001, 3, 1881; (d) S. P. de Visser, M. Filatov, and S. Shaik, Phys. Chem. Chem. Phys. 2001, 3, 1242; (e) P. W. Musch and B. Engels, J. Am. Chem. Soc. 2001, 123, 5557.

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108.C. F. Logan, J. C. Ma, and P. Chen, J. Am. Chem. Soc. 1994, 116, 2137.

109.For quantum chemical studies on 71 and related open-shell singlet biradicals, see:

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110.W. Sander, H. Wandel, G. Bucher, J. Gra¨fenstein, E. Kraka, and D. Cremer, J. Am. Chem. Soc. 1998, 120, 8480.

111.C. J. Cramer and J. Thompson, J. Phys. Chem. A 2001, 105, 2091.

112.A. Z. Bradley and R. P. Johnson, J. Am. Chem. Soc. 1997, 119, 9917.

113.Reviews on heteroarynes, see, e.g., (a) T. Kauffmann, Angew. Chem. Int. Ed. Engl. 1965, 4, 543; (b) H. J. den Hertog and H. C. van der Plas, Adv. Heterocycl. Chem. 1965, 4, 121; (c) T. Kaufmann and R. Wirthwein, Angew. Chem. Int. Ed. Engl. 1971, 10, 20;

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121.J. Chandrasekhar, E. D. Jemmis, and P. v. R. Schleyer, Tetrahedron Lett. 1979, 3707.

122.(a) M. N. Glukhovtsev, V. I. Minkin, and B. Y. Simkin, Russ. Chem. Rev. 1985, 54, 86;

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124.E. Kraka and D. Cremer, J. Comp. Chem. 2001, 22, 216.

125.C. J. Cramer, J. Am. Chem. Soc. 1998, 120, 6261.

126.J. H. Hoffner, M. J. Schottelius, D. Feichtinger, and P. Chen, J. Am. Chem. Soc. 1998, 120, 376.

127.W. M. David and S. M. Kerwin, J. Am. Chem. Soc. 1997, 119, 1464.

128.(a) P. Chen, Angew. Chem. Int. Ed. Engl. 1996, 35, 1478. For a recent discussion of the Chen-model and detailed investigations of hydrogen-abstractions by benzynes, see:

(b)A. E. Clark and E. R. Davidson, J. Am. Chem. Soc. 2001, 123, 10691.

129.C. J. Cramer and R. R. Squires, J. Phys. Chem. A 1997, 101, 9191.

130.(a) M. von Ardenne, Adv. Pharmacol. Chemot. (San Diego) 1972, 10, 339; (b) I. F. Tannock and D. Rotin, Cancer Res. 1989, 49, 4373; (c) E. M. Sevick and R. K. Jain, Cancer Res. 1988, 48, 1201. Compare also Ref. 126 and literature cited therein.

131.W. D. Langer, T. Velusamy, T. B. H. Kuiper, R. Peng, M. C. McCarthy, M. J. Travers,

A.Kovacs, C. A. Gottlieb, and P. Thaddeus, Astrophys. J. 1997, 480, L63.

132.R. I. Kaiser, Chem. Rev. 2002, 102, 1309.

133.K. W. Sattelmeyer and J. F. Stanton, J. Am. Chem. Soc. 2000, 122, 8220.

134.S. Arulmozhiraja, T. Sato, and A. Yabe, J. Comp. Chem. 2001, 22, 923.

135.(a) E. K. Fields and S. Meyerson, J. Org. Chem. 1966, 31, 3307; (b) E. K. Fields and

S.Meyerson, Adv. Phys. Org. Chem. 1968, 6, 1. For trapping studies of benzdyines,

see (c) H. Hart, N. Raju, M. A. Meador, and D. L. Ward, J. Org. Chem. 1983, 48,

4357.

794ARYNES

136.M. Moriyama, T. Ohana, and A. Yabe, J. Am. Chem. Soc. 1997, 119, 10229.

137.T. Sato, S. Arulmozhiraja, H. Niino, S. Sasaki, T. Matsuura, and A. Yabe, J. Am. Chem. Soc. 2002, 124, 4512; and literature cited therein.

138.(a) M. Moriyama, T. Ohana, and A. Yabe, Chem. Lett. 1995, 557; (b) M. Moriyama,

T.Sato, T. Uchimaru, and A. Yabe, Phys. Chem. Chem. Phys. 1999, 1, 2267.

139.T. Sato, H. Niino, and A. Yabe, J. Photochem. Photobiol. A 2001, 145, 3.

140.(a) W. Weltner, Jr., and R. J. van Zee, Chem. Rev. 1989, 89, 1713; (b) J. M. L. Martin, J. P. Franccois, and R. J. Gijbels, Mol. Struct. 1993, 294, 21.

141.(a) K. R. Thompson, R. L. DeKock, and W. Weltner, Jr., J. Am. Chem. Soc. 1971, 93, 4688; (b) M. Vala, T. M. Chandrasekhar, J. Szcepanski, and R. Pellow, High Temp. Sci. 1990, 27, 19; (c) D. W. Arnold, S. E. Bradforth, T. N. Kitsopoulos, and D. N. Neumark,

J.Chem. Phys. 1991, 95, 8753; (d) C. C. Arnold, Y. Zhao, T. N. Kitsopoulos, and D. N. Neumark, J. Chem. Phys. 1992, 97, 6121; (e) R. H. Kranze and W. R. M. Graham,

J.Chem. Phys. 1993, 98, 71; (f) H. J. Hwang, A. van Orden, K. Tanaka, E. W. Kuo, J. R. Heath, and R. J. Saykally, Mol. Phys. 1993, 79, 769.

142.Relative stabilities of C6 isomers have been calculated at different levels of theory:

(a)K. Raghavachari, R. A. Whiteside, and J. A. Pople, J. Chem. Phys. 1986, 85, 6623;

(b)K. Raghavachari and J. S. Binkley, J. Chem. Phys. 1987, 87, 2191; (c) J. Hutter and

H.P. Lu¨thi, J. Chem. Phys. 1994, 101, 2213; (d) J. Hutter, H. P. Lu¨thi, and F. Diederich,

J.Am. Chem. Soc. 1994, 116, 750. The historical developement of calculations on C6 is outlined in (e) J. M. L. Martin and P. R. Taylor, J. Phys. Chem. 1996, 100, 6047.

Concerning the aromaticity of 133 and 134, see Ref. 123.

143.S. L. Wang, C. M. L. Rittby, and W. R. M. Graham, J. Chem. Phys. 1997, 107, 6032.

144.F. Grein, J. Franz, M. Hanrath, and S. D. Peyerimhoff, Chem. Phys. 2001, 263, 55.

PART 2

METHODS AND TEMPORAL REGIMES

CHAPTER 17

Matrix Isolation

THOMAS BALLY

Department of Chemistry, University of Fribourg, CH-1700, Fribourg, Switzerland

1.

What Is Matrix Isolation? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

798

2.

Why Matrix Isolation? . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

799

3.

Limitations of Matrix Isolation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

801

4.

Technical Aspects, Equipment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

802

 

4.1. Cryostats and Associated Apparatus . . . . . . . . . . . . . . . . . . . . . . . . . . .

803

 

4.2. Sample Holders, Spectroscopic Windows . . . . . . . . . . . . . . . . . . . . . . . .

804

 

4.3. Inlet Systems . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

807

 

4.4. Sample Preparation Lines. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

809

 

4.5. Vacuum Equipment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

809

 

4.6. Trolleys . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

810

 

4.7. Spectrometers . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

811

5.

Methods for Generating Reactive Intermediates for Low-Temperature

 

 

Matrix Studies . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

812

 

5.1. External Generation. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

812

 

5.2. Cocondensation of Two Reagents . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

813

 

5.3. Generation in Situ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

814

6.

Preparation of Different Types of Reactive Intermediates . . . . . . . . . . . . . . . .

815

 

6.1. Carbenes, Nitrenes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

815

 

6.2. Radicals. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

816

 

6.3. Biradicals. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

818

 

6.4. Radical Ions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

820

 

6.5. Closed-Shell Ions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

823

 

6.6. Other Reactive Intermediates . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

824

7.

Probing Matrix-Isolated Reactive Intermediates . . . . . . . . . . . . . . . . . . . . . . .

828

 

7.1. General Remarks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

828

 

7.2. Infrared Spectroscopy: Experiment . . . . . . . . . . . . . . . . . . . . . . . . . . . .

830

 

7.3. Infrared Spectroscopy: Modeling. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

832

 

7.4. Ultraviolet–Visible Spectroscopy: Experiment. . . . . . . . . . . . . . . . . . . . .

836

 

7.5. Ultraviolet–Visible Spectroscopy: Modeling . . . . . . . . . . . . . . . . . . . . . .

836

8.

Conclusion and Outlook . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

838

Reactive Intermediate Chemistry, edited by Robert A. Moss, Matthew S. Platz, and Maitland Jones, Jr. ISBN 0-471-23324-2 Copyright # 2004 John Wiley & Sons, Inc.

797

798

MATRIX ISOLATION

 

Acknowledgments. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

840

Suggested Reading . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

840

References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

840

1. WHAT IS MATRIX ISOLATION?

If one peruses the literature on reactive intermediates, or discusses the subject with colleagues interested in that field, one soon finds that the term ‘‘matrix isolation’’ means different things to different people, so some semantic clarification appears to be in order at the outset.

The term ‘‘matrix isolation’’ was coined by George Pimentel who pioneered this field1,2 together with George Porter.3 Pimentel intended this term to refer to a method whereby a substrate is mixed with a large exess of an (unsually unreactive) host gas and is condensed on a surface that is sufficiently cold to assure rapid solidification of the material. In this way, one ends up with a sample where (ideally) each substrate molecule is immobilized in a cavity surrounded by one or more layers of inert material and is thus ‘‘isolated’’ from the other substrate molecules in a ‘‘matrix’’ of the host gas.

In the course of time, the term matrix isolation came to be applied in a more general sense, encompassing a range of techniques where guest molecules are trapped in rigid host materials and are thereby prevented from undergoing diffusion. Such host materials may be, for example, crystals, zeolites or clays, polymers, boric acid glasses, or cryptands. However, most relevant in the present context are studies of reactive intermediates in frozen solutions that are often referred to under the heading of ‘‘matrix isolation,’’ but should perhaps more appropriately be referred to as ‘‘low-temperature spectrosopy in rigid media.’’

Such experiments have provided (and continue to provide) much valuable spectrosopic information on many types of reactive intermediates discussed in this volume. In particular, solvents that provide transparent glasses on freezing, such as the ether–pentane–alcohol (EPA) mixture introduced by G.N. Lewis,4 methyltetrahydrofuran (MTHF), or the mixture of CFCl3 and CF2Br CF2Br discovered by Sandorfy5 have proven to be very convenient media for obtaining ultraviolet– visible (UV–vis) absorption spectra of reactive intermediates that can be generated by photolysis or radiolysis at 77 K. On the other hand, many odd electron species (radicals, triplet biradicals and carbenes, radical ions) were characterized by electron spin resonance (ESR) methods in solvents that form polycrystalline matrices long before matrix isolation techniques became widely available.

However, to include this enormous body of work, and the techniques that stand behind it, into the present chapter would surpass its limits. Hence, the reader is encouraged to visit the contributions on carbocations, carbanions, radicals, radical ions, carbenes, sylilenes, nitrenes, and arynes where studies involving frozen solutions will be referred to in their topical context. Thus, this chapter will deal only

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