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Gut Eect on Phytochemicals
Figure 1. Biotransformation of Ellagic acid into Urolithins (adapted from Al-Harbi et al., 2021)
Proantocyanidins
Proanthocyanidins are formed by the condensation of single or multi-component of flavan-3-ols and are
found in grapes, apples and chocolate (Kawabata et al., 2019). In stomach partial degradation occurs
due to acidic environment and oligomers are hydrolysed to epicatechin monomer and dimers. This was
suggested to enhance the absorption in the small intestine (Spencer et al., 2000). However, only a small
number of proanthocyanidins are bioaccessible in the small intestine (Del Rio et al., 2010). Meanwhile,
microbiota can act on monomeric and oligomeric catechins in the gut. Microbial degradation forms
3-hydroxyphenylacetic acid, 3,4-dihydroxyphenylacetic acid, 3-(3-hydroxyphenyl)propionic acid, and
5-(30-hydroxyphenyl)-γ-valerolactone (Spencer et al., 2000). A feeding study (20 healthy human volunteers) also showed that gut microbiota transforms green tea flavan-3-ols into polyhydroxyphenyl-gvalerolactones (Del Rio et al., 2010).
Bioactive Peptides
Plant proteins can provide bioactive peptides which improve human health with their antioxidative,
anti-inflammatory, antihypertensive, antihypercholesterolaemic, anticancer, antimicrobial effects. These
bioactive compounds were also suggested to support delivery and bioavailability of many other bioactive
compounds (Karaś et al., 2017). Food industry can provide various types bioactive protein by-products
such as milk proteins or rice soy proteins. Following the intake, peptides encounter with many digestive
enzymes in the mouth, stomach and the small intestine. In small intestine, many additional enzymes from
the enterocytes are secreted as well. These enzymes are expressed in the microvilli of the brush border
membrane and within the glycocalyx including dipeptidyl-peptidases 3 and 4, glutamyl aminoopeptidase,
membrane metallo-endopeptidase, transmembrane protease serine 4 and transmembrane protease serine
15 (Lundquist & Artursson, 2016).
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Gut Eect on Phytochemicals
To show any biological effects, bioactive peptides should be absorbed from the gastrointestinal tract.
Different mechanisms are in place to achieve uptake of these peptides. These mechanims can be listed
as: Paracellular transport through intercellular tight junctions, direct penetration of the epithelial cellmembranes, endocytosis/phagocytosis by cells, and active transport by specific carrier proteins. Studies
on bioactive peptides reported inadequate evidence on ability of the dietary bioactive peptides to enter
the hepatic portal system in physiologically relevant concentrations whereas there is enough evidence
on bioavailability of the dipeptides and tripeptides (Chakrabarti et al., 2018).
Peptides and aminoacids in the gut are also used to produce short chain fatty acids such as propionate
and butyrate. It is estimated that low pH condition and presence of carbohydrates affect peptide and aminoacid fermentation in proximal colon but distal colon serves a better environment (Louis & Flint, 2017).
As bioactive peptides can be produced by microbial fermentation. Using Lactic acid bacteria is accepted as an effective way of producing bioactive peptides in fermentaton media or food fermentation
processes. It is reported that around 13 g of protein and peptides/day was estimated to reach human
colon (Louis & Flint, 2017). It is known that many peptides have the capacity to modulate human gut
microbiota (Wu et al., 2021). Human gut microbiota should have capacity to produce bioactive peptides
from ingested proteins reached colon. However, there is limited information on this subject, especially on
plant derived ones. A study investigated the milk peptides released in the gastrointestinal tract of minipigs. Six different dairy food matrices were given to the pigs, later duodenal effluents were obtained
over a 5 h-period and analyzed by tandem mass-spectrometry. Production of bioactive peptides were
also reported and that approves bioactive peptide production by gut microbiota as suggested in in vivo
experiments (Barbé et al., 2014).
Glucosinolates
Glucosinolates are sulphur containing glycosides found in cruciferous vegetables mainly belong to the
Brassicaceae, Capparaceae and Caricaceae genera. These include broccoli, radish, cabbage, Brussels
sprouts, cauliflower and turnip of the different Brassica species. Glucosinolates have little biological
activity but their degradation products serve as a defence against herbivores including insects, birds,
aphids and mammals. Glucosinolates are also responsible for the characteristic flavour and odour of these
vegetables. It was reported that they have antifungal and antibacterial properties (Fahey et al., 2001).
Glucosinolate research started with toxicological aspects of glucosinolates and methods for removing
them from dietary sources and animal feed but nowadays, the studies are mainly focused on their potential
health promoting effects (Narbad & Rossiter, 2018).
Glucosinolates (Figure 19.2) are degraded by plant myrosinases into bioactive isothiocyanates (ITCs)
which have been recognised as potent anticancer compounds. Myrosinase (thioglucoside hydrolase EC
3.2.3.1) is the enzyme responsible for hydrolysis of glucosinolates. Normally, glucosinolate hydrolysis
in plant is avoided by storing glucosinolate and the degradation enzyme in different plant compartments
(Fahey et al., 2001). Glucosinolate can generate various types of metabolites such as ITCs, nitriles, epi-
thionitriles and thiocyanates. Table 19.3 shows some of the common glucosinolates found in cruciferous
plants and their degradation products, ITCs.
The plant myrosinases are well studied and characterised. However, during cooking plant myrosinases
are heat inactivated and this biotranformation relies on specific gut bacteria and their myrosinase-like
enzymes that can metabolise glucosinolates into ITCs (Narbad & Rossiter, 2018). In addition, reductases
are also involved in glucosinolate metabolism. They can reduce sulphoxide groups and produce their
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109

Gut Eect on Phytochemicals
Figure 2. General Structure of Glucosinolates. R; variable side chain (adapted from Halkier & Gershenzon, 2006).
counterpart reduced glucosinolates (such as from glucoraphanin to glucoerucin) (Figure 19.3) (Cebeci,
2017).
Glucosinolates are well studied phytochemicals especially due to their bioactive degradation prod-
ucts. As different cooking methods destroy myrosinase activity from plant itself, ITC production by
human gut microbiota becomes important to confer health promoting effects. However, there is limited
information about formation of ITCs by human gut bacteria. There are studies including human intervention, rat models (Elfoul et al., 2001) studies, gut community based in vitro fermentation models or in
vitro fermentation assays using pure bacterial cultures (Luang-In et al., 2014; Mullaney et al., 2013b).
These studies mainly show that there is an inter-individual difference in glucosinolate metabolism by
human due to gut microbiota composition. It is known that many bacteria in human gut are involved in
Table 3. Some Important Glucosinolates and their Hydrolysis Products (adapted from (Luang-In et al.,
2014)
Glucosinolate Precursor Isothiocyanate Product Nitrile Product
Sinigrin Allylisothiocyanate Allyl nitrile
Glucoerucin Erucin Erucin nitrile
Glucoiberin Iberin Iberin nitrile
From Gluconasturtiin Phenethyl isothiocyanate Phenethyl nitrile
Glucoraphanin Sulforaphane Sulforaphane nitrile
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Gut Eect on Phytochemicals
Figure 3. Proposed metabolism of glucosinolates into isothiocyanates by gut microbiota (adapted from
(Cebeci, 2017)
glucosinolate degradation and glycoside hydrolases are involved in the metabolism but the responsible
enzyme in the human gut is yet to be identified.
In vitro fermentation assays use human gut microbiota to assess their impact on glucosinolates in
vitro. There are pioneer studies reporting glucosinolate degradading ability of pure bacterial strains in
vitro. For instance, Enterobacter cloacae was identified as a sinigrin degrading bacterium in 1974 (Tani
et al., 1974b). Another study reported glucosinolate degrading ability of Bacillus cereus strains (Huber et
al., 1983) and Brabban & Edwards (1994) showed that Bacillus, Streptomyces, Staphylococcus isolates
and an unknown fungus can degradee sinigrin. These strains were not isolated from the human gut but
Enterobacter, Bacillus and Staphylococcus genera are also members of human gut microbiota. Later, in
vitro fermentation assays were performed using pure bacterial cultures of human origin but some of these
could not detect ITCs. Cheng et al. (2004) studied Bifidobacterium pseudocatenulatum, Bifidobacterium
adolescentis and Bifidobacterium longum for their ability to utilise sinigrin and glucotropaeolin in vitro.
The study concluded that these Bifidobacterium strains are able to utilize both sinigrin and glucotropaelin producing 3-butene-nitrile as main product. Phenylacetonitrile and AITC or benzyl isothicyanate
(BITC) were hardly detectable.
Plant myrosinase (thioglucosidase) is a member of glycoside hydrolase family 1 (GH1). Studies also
used bioinformatic tools to find myrosinase like enzymes of different bacterial species and determine
myrosinase producers. Mullaney et al. (2013a) investigated three bacteria including Lactobacillus plan-
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Gut Eect on Phytochemicals
tarum KW30, Lactococcus lactis subsp. lactis KF147, and Escherichia coli Nissle 1917, and known
myrosinase-producer Enterobacter cloacae to degrade the glucosinolates in broccoli extract. It was
shown that Enterobacteriaceae degraded 65% of glucoiberin and 78% of glucoraphanin and transformed
them mainly into their reduced counterparts glucoiberverin and glucoerucin, respectively. The study
reported only a small amount of iberverin nitrile and erucin nitrile formation when Enterobacteriaceae
was included. On the other hand, lactic acid bacteria consumed 30−33% of glucosinolates and produced
nitriles such as iberverin nitrile, erucin nitrile, sulforaphane nitrile, and further unidentified metabolites
(Mullaney et al., 2013).
Luang-In et al investigated the metabolism of glucoerucin, glucoiberin and glucoraphanin by gut
strains; Lactobacillus agilis R16, Enterococcus casseliflavus CP1, Escherichia coli VL8. Lactobacil-
lus agilis R16 metabolised only 10% of glucosinolates and did not produce any detectable products. E.
casseliflavus CP1 metabolised 40-50% of glucoiberin and glucoraphanin and resulted in formation of
iberin and sulforaphane in low concentrations. Escherichia coli VL8 showed 80-90% degradation of
glucoiberin and glucoraphanin. The metabolism by E. coli VL8 produced glucoiberverin from glucoiberin and glucoerucin from glucoraphanin. Other metabolites were erucin, erucin nitrile and iberverin,
iberverin nitrile respectively which points a reductase activity. This reductase activity was proposed to
2+
performed by a reductase requires both Mg
and NAD(P)H as cofactors (Luang-In et al., 2014). This
study also supports the idea that reductases are also involved in glucosinolate metabolism by gut bacteria (Cebeci, 2017). A follow-up study using same Lactobacillus agilis R16, Enterococcus casseliflavus
CP1 and Escherichia coli VL8 aimed to investigate the metabolic fates of sinigrin, glucotropaeolin,
gluconasturtiin, and their corresponding desulfo-GSLs. Gluconasturtiin was completely degraded within
24 h to phenethyl isothiocyanate and phenethyl nitrile by all bacteria, excluding L. agilis R16 which
produced only phenethyl nitrile. More than 80% of glucotropaeolin and sinigrin were degraded by all
bacteria within 24 h to ITCs and nitriles. The total amount of the products only accounted for 3–53%
+2
of the initial glucosinolate amount. It was reported that Fe
promotes nitrile production, while Mg+2
does the same for ITC formation. In addition, the study showed that desulfoglucosinolates can only give
rise to nitriles not ITCs or epithionitriles (Luang-In et al., 2016). Crucifer specialists were reported to
have sulfatase activity which enables them to produce desulfoglucosinolates from glucosinolates. This
biotransformation prevents myrosinases to act on glucosinolates and form toxic hydrolysis products to
specialists (Ratzka et al., 2002).
Bacteroides thetaiotaomicron, a human digestive strain, was studied for its ability to degrade sinigrin
in a gnotobiotic rat model. An oral dose of 50 µmol sinigrin was given to gnotobiotic rats harbouring
B. thetaiotaomicron. Sinigrin was metabolised in the large bowel and, allyl isothiocyanate, hydrolysis
product of sinigrin, was detected in digestive contents (Elfoul et al., 2001). Another study investigated
glucoraphanin degradation by 5 Lactobacillus species (Lactobacillus gasseri, Lactobacillus acidophilus,
Lactobacillus casei and two Lactobacillus plantarum species). The degradation rate by the Lactobacillus
species ranged from 36 to 49% after 24 h incubation and the main degradation product was nitrile, no
sulforaphane was detected (Lai et al., 2009).
Studies also investigate glucosinolate degradation by the microbial community instead of a certain
type bacteria in rat models. For instance, Lai et al. (2009) showed that rat cecal microbiota was able to
degrade 40% of the initial glucoraphanin in the medium after 24 h incubation. When rats were pretreated
with glucoraphanin, degradation rate went up to 56%. The main hydrolysis product was reported to
be nitrile. The study determined that isothiocyanate metabolites are formed and found in portal blood
stream after introducing glucoraphanin directly to cecum. A following study to this examined ex vivo
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Gut Eect on Phytochemicals
degradation of glucoraphanin by rat cecal microbiota and reported evidence for glucoraphanin hydrolysis
to sulforaphane and its absorption across the cecal walls of rats. Glucoraphanin (150 µmol/kg BW) was
directly introduced to cecum and ITC were detected in the mesenteric plasma by 120 min and plasma
levels keeping the stability for an hour (Lai et al., 2010). A rat model study investigated glucosinolate
hydrolysis in gnotobiotic rats. Rats harbouring a whole human faecal flora (Flora+) was compared
with that in germ-free rats (Flora-). To test the effect of plant myrosinase, myrosinase was either active
(Myro+) or inactive (Myro-) in the diets given to the rats. Urinary mercapturic acids which are end
products of isothiocyanate metabolism were used o estimate isothiocyanate formation. The study concluded that highest excretion of urinary mercapturic acids was found when plant myrosinase was active
(Myro+) in grem-free rats (Flora-). The excretion was lower in rats with whole human feacal microbiota
(Flora+) and given active myrosinase (Myro+). Excretion of urinary mercapturic acids was low in rats
harbouring a whole human faecal flora (Flora+) but Flora+ treatments also show promising capacity
to break down glucosinolates as no intact glucosinolates were detected in the faeces of rats (Rouzaud
et al., 2003a). These results emphasize the importance of an active and efficient myrosinase to confer
health benefits from glucosinolates.
Studies mostly report ITC formation and potential health benefits thanks to human gut microbiota
(Krul et al., 2002). However, some studies focus on the fact that other metabolites but yet ITCs can be
produced such as allyamine or benzylamine (Combourieu et al., 2001). Food matrix effect should also
be taken into account when discussing bioavailability of bioactive compounds. For instance, plants
include specifier proteins as they have myrosinases. In presence of specifier proteins, the hydrolysis of
glucosinolates results in formation of nitriles, epithionitriles and organic thiocyanates instead of ITCs
(Wittstock & Burow, 2007). Biological activity of these compounds are low compared to ITCs plus they
can even show toxic effects such as thiocyanates (inhibit the uptake of iodide by the thyroid)(Eisenbrand
& Gelbke, 2016; Wittstock & Burow, 2007).
Health claim on glucosinolates depends on ITC formation and its concentration but glucosinolate degradation not always end up by formation of ITCs. To determine the amounts of glucosinolate metabolite,
a dynamic in vitro large-intestinal model was used. The study investigated sinigrin and its metabolites
using human gut microbiota. Allyl isothiocyanate (from sinigrin) peak levels were observed between
9 and 12 h after the addition of sinigrin. The study reported that only 10% to 30% (mean 19%) of the
sinigrin was converted into allyl isothiocyanate so rest of the sinigrin was supposed to be converted into
unknown metabolites (Krul et al., 2002). Another in vitro fermentation assay using rat intestinal microbiota reported degradation of up to 64% of the initial sinigrin amount during 12h. The study showed
that major products were allyl isothiocyanate (15% of initial sinigrin) and allyl cyanide (20% of initial
sinigrin) after 12h. 1-cyano-2,3-epithiopropane was also detected in trace amounts in culture medium
(Lu et al., 2011). This result raises the question about rest of the degraded sinigrin. Similar results were
reported in another study testing the effect of human gut microbiota on glucoraphanin. The amounts of
the metabolites detected by combined HPLC and LC–MS/MS methods did not account for the initial
amount of the glucoraphanin in the media.
A human intervention study inclued 18 healthy volunteers consumed broccoli soups from fresh or
frozen broccoli florets (lightly cooked before freezing). The study showed that glucoraphanin was converted into sulforaphane and sulforaphane was found in the plasma and urine as free form or sulforaphane
thio-conjugates. In addition, the study reported reductase activity of gut microbiota forming glucoerucin
from glucoraphanin. As Erucin N-acetyl-cysteine conjugate was also determined as a urinary metabolite,
it was proposed that human gut microbiota can show myrosinase and reductase activity (Saha et al., 2012).
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Gut Eect on Phytochemicals
Clarke et al. (2011) investigated the bioavailability and excretion of the mercapturic acid pathway
metabolites of isothiocyanates after human consumption of fresh broccoli sprouts or broccoli supplement. The study was designed as a cross-over study in which 12 subjects consumed 40 grams of fresh
broccoli sprouts followed by a 1 month washout period and then the same 12 subjects consumed 6 pills
of a broccoli supplement. Control group was given alfalfa sprouts during the first phase and placebo pills
during the second phase. The bioavailability of sulforaphane and erucin, main ITC products of brocoli,
is siginificantly higher in fresh broccoli sprout consuming group. Interconversion of sulforaphane and
erucin was also observed within each subject but this conversion was variable among the subjects. This
study also confirms the importance of an active myrosinase to produce ITCs as stated in previous rat
model study (Rouzaud et al., 2003a).
Some of the studies reporting the effect of gut microbiota on glucosinolate metabolism are listed
in Table 4. Briefly, many studies report the glucosinolate degradation by community based microbiota
or pure bacterial cultures and glycoside hydrolases are suggested to be the responsible enzyme. Many
attempts were also made to identify the gut microbial myrosinases (Liou et al., 2020; Luang-In et al.,
2014). Some of these studies reported myrosinase activity by only intact cells but some showed myrosinase activity in cell-free extracts as well (Cebeci, 2017; Luang-In et al., 2014).
MAIN FOCUS OF THE CHAPTER
This chapter mainly focus on biotransformation of phytochemicals by human gut microbiota. It discusses
the studies (in vitro or in vivo) reporting or suggesting the gut microbial effect on different bioactive
compounds.
SOLUTIONS AND RECOMMENDATIONS
The main concern regarding the effectiveness of phytochemicals in vivo raises from their low bioavailability profiles. Many studies report evidence for these bioactive compounds to show anticancer,
antitumor, antiviral, antimicrobial, antiinflammatory and cardioprotective effects. Unfortunately, the
concentration used in in vitro experiments are rarely applicable in vivo so this raises question about
the real effectiveness of these molecules. To overcome this, further human feeding trials using in vivo
applicable doses are needed.
FUTURE RESEARCH DIRECTIONS
As discussed in the chapter, human gut microbiota influences bioavailability of phytochemicals. However,
our knowledge on this subject is limited for some phytochemicals. For instance, phenolic compounds are
generally known to be metabolized by gut community but studies mostly lack identification of specific
responsible microoorganisms. Identification of specific microorganism or responsible enzymes can help
enhancing bioavailability of phytochemicals as some of them show very low bioavailability. In addition, studies mostly focus on bacteria but the role of other micoorganisms such as fungi should also be
adressed. Another issue, human feeding studies mostly use bioactives in pure forms however presence of
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Gut Eect on Phytochemicals
other compounds change how microorganisms act on phytochemicals and which metabolites are formed.
Briefly, more studies are needed to adress food matrix effect on bioavailability.
Table 4. Studies reporting the effect of certain microorganisms or community based gut microbiota on
glucosinolate metabolism
Study Details
In vitro
fermentation
studies
Gnotobiotic rat
model
Cecal
microbiota
from male
F344 rats
Rat intestinal
microbiota
In vitro
fermentation
using dynamic
intestinal
model
Human
intervention
study
Glucosinolates & (Source
if given)
Sinigrin Enterobacter cloacae
Glucosinolates, (defatted
rape seed meal)
Sinigrin
Sinigrin
Glucotropaeolin
Glucoraphanin
(broccoli extract)
Glucoerucin
Glucoiberin
Glucoraphanin
Sinigrin, Glucotropaeolin,
Gluconasturtiin Desulfo-
glucosinolates
Sinigrin Bacteriodes thetaiomicron
Glucoraphanin Not determined, colonic fermentation in gut suggested
Lactobacillus gasseri
Glucoraphanin
Desulfosinigrin Community based human gut microbiota (Lu et al., 2011)
Sinigrin Community based human gut microbiota
Glucoraphanin
(broccoli sprouts or broccoli
suplement
Glucoraphanin
(broccoli soup)
Lactobacillus acidophilus
Lactobacillus casei
Lactobacillus plantarum strains
Community based human gut microbiota
(inter-individual variation due to gut microbiota composition)
Community based human gut microbiota
Staphylococcus and unknown fungus
Bifidobacterium pseudocatenulatum,
Lactoccoccus lactis subsp. lactis KF147
Microorganisms Reference
Bacillus cereus strains
Trichosporon cutaneum (yeast)
Bacillus, Streptomyces
Bifidobacterium adolescentis,
Bifidobacterium longum
Lactobacillus plantarum KW30
Escherichia coli Nissle 1917
Enterobacter cloacae
Lactobacillus agilis R16
Enterococcus casseliflavus CP1
Escherichia coli VL8
Lactobacillus agilis R16
Enterococcus casseliflavus CP1
Escherichia coli VL8
(Tani et al.,
1974a)
(Huber et al.,
1983)
(Brabban &
Edwards, 1994)
(Cheng et al.,
2004)
(Mullaney,
Kelly, et al.,
2013)
(Luang-In et al.,
2014)
(Luang-In et al.,
2016)
(Combourieu et
al., 2001)
(Rouzaud et al.,
2003b)
(Lai et al.,
2009)
(Krul et al.,
2002)
(Clarke et al.,
2011)
(Saha et al.,
2012)
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Gut Eect on Phytochemicals
CONCLUSION
The studies reveal that many microorganisms are involved in transformation of pytochemicals into their
metabolites. Sometimes, these metabolites are more bioactive than parent compounds and in some
cases they can be toxic to host as well. For certain phytochemicals, it was known that which enzymes
in the gut are involved in biotansformation. For instance, α-rhamnosidase, exo-β-glucosidase, endo-βglucosidase and/or β-glucuronidase are suggested to be involved in flavonoid degradation and gut bacterial
myrosinases (possibly glycoside hydrolases), reductases (such as methionine reductases), sulfatases in
glucosinolate degradation. However, further studies are needed. Various studies emphasize that there is
inter-individual diffences among people in phytochemical metabolism. The knowledge we have about
pytochemical bioavailability shoud enable us to develop better strategies. By doing so, it would be possible to enhance the biavailability of these compounds and make the most of them.
In conclusion, it was aimed to provide a better understanding of microorganisms and their enzymes
involved in pytochemical metabolism to maximise the health benefits. Such understanding can lead us
identification of probiotic strains to enhance the bioavailability of phytochemicals. This would improve
the efficiency of these bioactive compounds for people who are unable to utilise phyochemicals and
benefit efficiently.
ACKNOWLEDGMENT
This research received no specific grant from any funding agency in the public, commercial, or not-forprofit sectors.
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