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Ординатура / Хирургия / Библиотека им академика М.И. Перельмана / Книга_2767_Библиотеки_им_академика_М_И_Перельмана

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Index
https://t.me/medicina_free
bivariate model (cont’d)
presenting findings 333, 334 sensitivity analysis sparse data and atypical data sets summary statistics
239–241, 266, 320–321
297–303
264–265, 289–291,
317–320,320
undertaking meta-analysis
blinding
176, 184
Boolean operators
112–113 Box-Cox transformations broad questions
87–88
250
222
case-control studies
risk of bias and applicability assessment
177–178
study design
categorical data
2
Chi
statistic 223, 232
39, 39, 42
151
China National Knowledge Infrastructure
103
(CNKI)
CINAHL
103–104, 115 clinical decisions 25 clinical pathway
defining the clinical pathway unclear and multiple clinical pathways
80–83, 81–82
83–84 clinical reference standard 45 clinical study reports (CSR) 133 Clopper–Pearson method 61 CNKI see China National Knowledge
Infrastructure
CoCites
106
comparative studies
drawing conclusions evaluating medical tests
359–362, 368
28 measures of test accuracy 54, 68–71, 69 meta-analysis 206, 211, 216, 230–238,
272–301 presenting findings 330, 333–336, 334–335 risk of bias and applicability assessment 178–
181, 180–181, 188, 189 study design
45–47, 46–47 composite reference standard 44, 302 concealment of allocation 179 conclusions see drawing conclusions conference abstracts 132 confidence intervals
data collection 143–144 drawing conclusions 355–356, 360, 361,
364,365
measures of test accuracy 60–61, 68
meta-analysis 208, 210, 211, 216, 218, 226,
237, 238, 287, 305, 311 plain language summary presenting findings
392
334, 336, 337, 344–345,
346
risk of bias and applicability
conflicts of interest
14
171
confounders
drawing conclusions meta-analysis presenting findings
consecutive enrolment
362, 368
231
340
176–177
consensus
data collection
159
drawing conclusions 367
consumer involvement
13
continuous data
data collection
151 measures of test accuracy 54 review questions
91 controlled vocabulary 110–112 counts 54 coupled forest plots 208, 209, 267 covariates
data collection
151
meta-analysis 215, 222–229
cross-classification
measures of test accuracy
54, 56, 57
planning a systematic review of test
accuracy
11
study design 37 cross-referencing 133–134 cross-sectional studies
review questions
88
study design 37, 38–39 CSR see clinical study reports c-statistic see area under the curve
data collection 131–167
2x2 contingency tables 134–135, 141–144,
142, 143, 145–146, 149–150, 161 checklist of data items 136, 136–137 concepts and definitions 132 correspondence with investigators 134–135 demographics 138 extracting and converting study
results 141–151 extracting covariates 151 extracting data from reports 157–160 flow and timing 140–141
400
Index
https://t.me/medicina_free
global measures 144 index test individual patient data managing and sharing data and tools
missing data and partial verification bias
multiple index tests from same study
multiple reports and complex reviews
multiple thresholds and extracting data from
other information to collect 151–152 participant characteristics and
sources of data studies versus reports as unit of
study methods 137–138 subgroups of patients target condition and reference
test failures 147 tools for data collection 152–157, 153–154
what data to collect data mining 120 decision analysis 24 deep learning 121 delayed verification deviance information criterion (DIC) 223 diagnostic odds ratios (DOR)
data collection
drawing conclusions
measures of test accuracy 63, 64
meta-analysis 219, 223, 228, 269
presenting findings 330–332, 331
relative diagnostic odds ratio 228
risk of bias and applicability assessment 192 Diagnostic Test Accuracy Editorial Team 5 DIC see deviance information criterion Discussion section 350, 365–366 dissertations databases 104 DOR see diagnostic odds ratios dot plots 147–148, 148 drawing conclusions 349–376
applicability of findings to review
assessing the strength of the evidence
Authors’ conclusions 350, 369–374
139–140, 146, 148, 149–150
133, 150
160–163, 161–163
140, 148
148–150, 149–150
158–159, 160–163, 161–163
ROC curves or graphics
138–139
setting
132–135
133–134
interest
standard
question 369
352–362
140,145
44
144
147–148, 148
150
135–137
360
Discussion section GRADE approach heterogeneity implications for practice implications for research incomplete body of evidence precision of summary estimates risk of bias and applicability assessment
359, 363–364, 367
strengths and weaknesses of included
studies strengths and weaknesses of review Summary of findings tables
353–358
ecological bias eligibility/inclusion criteria
data collection drawing conclusions 369 literature searches 120–121 meta-analysis plain language summary 384 presenting findings 328 review questions 77, 76, 88–93 risk of bias and applicability assessment
193, 195 study design
Embase 102–103, 105, 110–111, 115 errata
data collection literature searches 114
explanatory studies 48–49
false negatives/false positives
data collection 141–148 drawing conclusions 351 evaluating medical tests 23, 25 measures of test accuracy 57, 68, 70 meta-analysis 219, 297, 312, 315 plain language summary 381 presenting findings 330–332, 341 risk of bias and applicability assessment
187, 192 study design
field tags 111 fixed-effect meta-analysis 214, 302–303 flow and timing
data collection presenting findings 340 risk of bias and applicability assessment
191–195, 194–195
350, 365–366
362–365
359–360, 364
370–373
373–374
361–362
360–361
351,
366–367
367–368
350–352,
340
133–134, 138
205, 239
178,
36, 39–40
132
43
140–141
401
Index
https://t.me/medicina_free
flow diagrams 174–175, 175 forest plots
coupled forest plots data collection heterogeneity meta-analysis
208, 209, 267
151 338 208, 209, 210, 267, 297–298,
302,338
reviews without meta-analysis fraudulent studies full-text reports fully paired design funding
14
114, 159–160
120–121
179
345
funnel plots 242
Gelman-Rubin statistic global measures
264
144 gold standard 45, 187 Google Scholar 106–107 GRADE approach 352, 362–365 graphics/figures
data collection
147–148, 148
plain language summary 388–390, 389,
390,396
risk of bias and applicability assessment
196, 196
see also presenting findings
grey literature
100, 107
guidelines 105
heterogeneity
drawing conclusions 359–360, 364 meta-analysis
205, 214–215, 222–230, 225,
226–227, 229, 230, 299–302
plain language summary
391 presenting findings 333, 336–340, 338, 339, 344 review questions 77
hierarchical summary receiver operating
characteristic (HSROC) model 215–216, 219–220, 220, 221
analysis with small numbers of
studies 238–239
Bayesian estimation of the model 268–272,
270, 272, 294–296, 295, 311–315, 315 comparing index tests 234–235, 235 comparison of summary curves 291–296 estimation of a summary curve 266–272 fitting model using R 306–311, 310–311 fitting model using SAS 267, 268, 292 imperfect reference standard 317–320 investigating heterogeneity 222–230,
228–230, 227, 229, 230
monitoring convergence multiple thresholds per study
270–271
221–222,
305–315, 310–311, 315 sensitivity analysis sparse data and atypical data sets specification of HSROC in rjags summary statistics undertaking meta-analysis
239–241, 272
299, 302
268–272
271, 295, 317–320, 320
249–250
HSROC see hierarchical summary receiver
operating characteristic model
2
I
statistic 214 incomplete reporting 108 inconclusive results 145–147 inconsistency see heterogeneity indexing systems
99–100, 102, 108, 110–111
index test
data collection drawing conclusions
139–140, 146, 148, 149–150
351–352, 362, 372–373 inconclusive index test results 55–56 literature searches 100–101 measures of test accuracy 53–56, 57 meta-analysis 230–238, 233, 233, 234,
237,238
plain language summary
380–383, 386–387,
391–392 presenting findings review questions
330, 345
77, 82, 85, 90–91
risk of bias and applicability assessment
182–186, 185–186, 191 study design
individual participation data (IPD)
37–38, 48
133, 150 information specialists 100–101, 108 intermediate results 55 interpretation bias 184, 188 IPD see individual participation data
joint classification
68, 69
Jones multiple thresholds model 222, 305–315,
310–311
journal articles 132
keyword searching 112–113, 119
language bias 113, 361 latent class analysis (LCA)
meta-analysis 241, 316–321, 318, 320 study design 45
Latin American Caribbean Health Sciences
Literature (LILACS) database 103, 115
LCA see latent class analysis
402
Index
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letters 132 likelihood ratios
data collection drawing conclusions measures of test accuracy meta-analysis presenting findings
LILACS see Latin American Caribbean Health
Sciences Literature linear mixed-effects modelling linked summary receiver operating characteristic
plots linking reports 134 literature searches 97–129
co-citation searching 105–106, 115 controlled vocabulary and text
words
designing search strategies 108–115 documenting and reporting the search
process
drawing conclusions forward citation searching 105–106 fraudulent studies, retracted publications,
errata and comments
future developments 121 handsearching information specialists 100–101, 108 keyword searching 112–113, 119 language, date and type of document
restrictions
minimizing risk-of-bias through search
methods
performance measures for search
strategies
review author roles 100–101 search filters 113 searching for studies 98–101 selecting relevant studies 119–121 sources to search 101–108 structuring the search strategy 109–110,
110,111
text word or keyword searching 112–113 working in partnership 100
logistic regression models 71
machine learning 120, 157 management studies 43 Markov chain Monte Carlo (MCMC)
simulation 223, 250, 263, 263, 270, 270,
295, 315, 317, 318 measures of test accuracy 53–72
143
352
61–63
216, 223, 229, 282
332, 332, 344
222
210
110–112
115–119, 118
367
114
105, 115
113
114–115
99
analysis of primary test accuracy study comparative studies concepts and definitions confidence intervals inconclusive index test results interpretation other measures positivity thresholds predictive values pre-test and post-test probabilities proportion with the target condition receiver operating characteristic curves
66–68, 67 sensitivity and specificity target condition 56 types of test data 54–55
medical test evaluation 21–33
biomarker discovery/development clinical evaluations of test accuracy 28 early evaluations of test accuracy 27 how diagnostic tests affect patient
outcomes purposes of medical testing 28–31, 28 test accuracy 23–24 test development 26–28 types of medical tests
MEDLINE 102–103, 105, 108, 112, 114, 121 meta-analysis 203–247, 249–325
aims for reviews of test accuracy 204 analysis with small numbers of
studies Bayesian statistics 61, 221, 241, 250, 261–266,
270, 268–272, 270, 272, 287–291, 290–291,
294–296, 295, 311–320, 315, 318, 343 comparing index tests
237, 238 comparison of summary curves comparison of summary points 272–291 data collection 150 drawing conclusions 352, 366, 368, 369 estimation of a summary curve 266–272 estimation of a summary point 251–266 facilitating convergence 297–301, 298 fitting hierarchical models 215–241 fixed-effect meta-analysis 214, 302–303 graphical and tabular presentation 208–211,
209–210
heterogeneity
226–227, 229, 230 imperfect reference standard 241, 316–321,
318,320
68–71, 69
53–54
60–61
55–56
59–60
61–64, 62, 64
64–65, 65
58
57–58, 64–65,67
24–26
22–23, 22
238–239
230–238, 233, 233,235,
205, 214–215, 222–230, 225,
56–64
59
58–59
26–27
291–296
403
Index
https://t.me/medicina_free
meta-analysis (cont’d)
literature searches 105 methodological developments monitoring convergence
270–271, 295, 317, 318
multiple thresholds per study
305–315, 310–311, 315 plain language summary planning a systematic review of test
accuracy planning the analysis presenting findings
340–346,342 publication bias regression analysis 223–224, 227–228 reviews of test accuracy versus reviews of
interventions sensitivity analysis
320–321 simplifying hierarchical models
303, 305 sparse data and atypical data sets
297–298, 302, 303, 305 special topics summary statistics 264–265, 271, 289–291,
295, 317–320, 320 verification bias when not to use in a review 204–205 see also bivariate model; hierarchical
summary receiver operating
characteristic model
meta-epidemiology 172 misclassification 187, 192 missing data
data collection drawing conclusions 361–362 risk of bias and applicability assessment 194
multiple-group studies 39–42, 40 multiple index tests
data collection 148–150, 149–150 risk of bias and applicability assessment 184
multiple thresholds model
data collection 147–148, 148 hierarchical summary receiver operating
characteristic model 221–222, 305–315,
310–311, 315 Jones method 222, 305–315, 310–311 Steinhauser method 222, 305–315, 310–311
narrative summary
drawing conclusions 366
15
207–208
329–336, 334–335,
242–243
205–206
239–241, 266, 272,
241–243
241–242
134–135, 140, 144, 148
241
263–264, 270,
221–222,
387
301–305, 302,
296–305,
presenting findings 346, 347 risk of bias and applicability assessment
writing a plain language summary narrow questions national databases network meta-analysis non-randomized comparative accuracy
studies
objectives odds ratios see diagnostic odds ratios online publications ordinal data 54 overall accuracy
paired comparative accuracy studies panel-based reference partial verification bias 148, 192 participant selection see recruitment patient outcomes
altering clinical decisions and actions
changes to time frames and
populations direct test effects 25 disease progression/recurrence 31 drawing conclusions evaluating medical tests 24–26 influencing patient and clinician
perceptions study design
peer review
data collection literature searches 107, 117
PICO format pilot testing 156–157 PIT format 84–86 plain language summary 377–397
aims of review 382, 395 audience and writing style 378–379 case example concepts and definitions 377–378 contents and structure 379–392 description of index test 382, 394 description of study benefits 381, 394–395 how up to date the evidence is 392, 397 included studies 383–384 key messages 380–381, 394 limitations of the evidence 391–392, 397 multiple index tests 386–387, 392 presenting findings 384–390, 389, 390,
395–397,396
87–88
103
236
47
86, 87
132
63
44–45, 46
25–26
372–373
26
36
132, 157
84
394–397, 396
377–397
46, 46
197
25
404
Index
https://t.me/medicina_free
review methods 382, 395–397 title
380
planning a systematic review of test
accuracy author team Cochrane protocols conduct and reporting expectations data management and quality assurance Diagnostic Test Accuracy Editorial Team funding and conflicts of interest keeping review up to date proposing a new review rationale 7 resources and support 13–15 software tools 15 specific features of Cochrane Reviews 5–6 title formats training 14–15
point estimates
drawing conclusions measures of test accuracy meta-analysis 211, 225, 265, 284 presenting findings 332, 333, 344, 346 review questions 77
point-of-care tests 79 populations
data collection evaluating medical tests 25–26 plain language summary 380 review questions study design 39–42, 40
positivity thresholds
data collection measures of test accuracy meta-analysis 212, 219, 222, 305–315, 310,
311,315 risk of bias and applicability assessment
post-test odds/probabilities 59, 345 pragmatic studies 48–49 precision
drawing conclusions 360–361, 365 literature searches 99, 108 meta-analysis 270 plain language summary 392 risk of bias and applicability assessment 171
predictive tests 31 predictive value
data collection 141–143, 142, 143 drawing conclusions 352, 366 measures of test accuracy 58 meta-analysis 217
3–18
11–13
7–11
5–6
14
6
6–7, 8
7, 8
359–360, 364
68
138
77, 80–81, 84–85, 89
147–148
64, 65
6
5
183
positive/negative predictive value
141–143, 142, 143
presenting findings predisposition tests preprints presenting findings
pre-test odds/probabilities prevalence prior distribution function 261, 269–270,
PRISMA-S/PRISMA-DTA 5, 116–119, 118 probability 59, 70–71, 345 prognostic tests 30 proof-of-concept studies
prospective studies 48 PsycINFO 103–104 publication bias
PubMed 102–103, 106, 111
132
comparisons of test accuracy
334–335
confidence intervals for differences in test
accuracy description of included studies individual and summary estimates of
testaccuracy investigations of sources of heterogeneity
336–340, 338, 339 meta-analysis
311, 310–311, 317–320, 320, 338 methodological quality of included
studies narrative summary 197 plain language summary 377–397 re-expressing summary estimates
numerically results of the search 328 Summary of findings tables 211, 345,
350–352, 353–358 summary points uncertainty and heterogeneity in summary
statistics when meta-analysis cannot be
performed see also forest plots; summary receiver
operating characteristic plots
341–344, 342
287, 294
evaluating medical tests study design 41
drawing conclusions 361–362, 365 funnel plots 242 literature searches 98, 107 meta-analysis 242
334, 341–344, 342
29
327–348
336–337
329–333, 331, 331–332
208–211, 209–210, 265,308–
329
340–344, 342
211–214, 333–334, 334
332
344–346
59, 345
27
58,
333–336,
328–329
405
Index
https://t.me/medicina_free
QUADAS-2/QUADAS-C see risk of bias and
applicability assessment
quality assurance
random-effects meta-analysis randomization
comparative accuracy studies enrolment review questions sampling
study design RDOR see relative diagnostic odds ratio receiver operating characteristic (ROC) plots
data collection
measures of test accuracy 54, 66–68, 67
risk of bias and applicability assessment
see also hierarchical summary receiver
operating characteristic model; summary receiver operating characteristic plots
recruitment
data collection 133, 137–138
risk of bias and applicability assessment
176–182, 180–181 reference lists reference management software reference standard
clinical reference standard composite reference standard 44 data collection delayed verification 44 evaluating medical tests 23 gold standard 45, 187 latent class analysis literature searches 99, 120 measures of test accuracy 54, 57 meta-analysis 241, 302, 316–321, 318,320 multiple reference standards 42–43, 43 panel-based reference 44–45 plain language summary 391 presenting findings 340, 345 review questions 81, 92–93 risk of bias and applicability assessment 182,
187–190, 189–190
study design 37–38, 42–45, 43 regional databases 103 regression analysis 223–224, 227–228 regulatory reviews 133 relative diagnostic odds ratio (RDOR) 228 relative risks 71 reliability 159 replacement tests 78
6
214, 226,303
46–47, 47
176–177
77
192
179
144, 147–148
100, 105, 115, 119
119
45
140–145, 145
45, 241, 316–321, 318, 320
183
reporting bias
drawing conclusions literature searches
158–159
reports representativeness requests for information retracted publications retrospective studies review bias review questions
add-on tests aims of systematic reviews of test
broad versus narrow questions 87–88 concepts and definitions 75–76 defining the clinical pathway defining the review question 84–88 drawing conclusions 369 eligibility criteria 77, 80, 88–93 identifying the clinical problem index test 77, 82, 85, 90–91 investigations of heterogeneity 77 objectives 86, 87 plain language summary populations 77, 80–81, 84–85, 89 reference standard 81, 92–93 replacement tests 78 risk of bias and applicability
role of a new test 77–80 target condition 57–58, 84–86, 91–92 triage tests 78, 82 unclear and multiple clinical pathways
RevMan
data collection meta-analysis 215–216, 221, 253, 265 planning a systematic review of test
risk of bias and applicability
bias and imprecision 171 biases in test accuracy studies: empirical
bias versus applicability 171–172 concepts and definitions 170 drawing conclusions 351, 359, 363, 367–368 literature searches 114–115 narrative summary of assessment 197 presenting findings 196, 196, 327–328, 345 QUADAS-2
391
accuracy
assessment
accuracy 15
assessment 169–201
evidence 172
applicability assessment 174
361
113
177
108
114
48
75–95
79
76–77
80–83, 81–82
77–84
380–381
169–172
142–143
83–84
406
Index
https://t.me/medicina_free
background 173 flow and timing flow diagrams index test participant selection performing the QUADAS-2
assessment
reference standard
189–190
risk of bias assessment using and tailoring QUADAS-2
QUADAS-C
background flow and timing 193–195, 195 index test 182–186, 185–186 participant selection 178–181, 180–181 reference standard
study design 43 risk stratification 29 ROC see receiver operating characteristic Rutter and Gatsonis HSROC model see
hierarchical summary receiver operating characteristic model
sample size sampling methods 137–138 scientific misconduct 159–160 screening tests 29 search filters search recall 99, 108 sensitivity/specificity
data collection
drawing conclusions
evaluating medical tests 23, 27
literature searches 99, 115
measures of test accuracy
meta-analysis 205–241, 218, 218, 220, 221,
presenting findings 330–336, 331–332, 334,
risk of bias and applicability assessment
setting
data collection
plain language summary 391
review questions 80–81 software tools 15 sparse data sets
meta-analysis 296–305, 297–298, 302, 303, 305
plain language summary 387
141, 142, 143
238, 252, 261–273, 276, 282, 287, 297–311, 305, 310–311, 320–321
335, 337, 341–346, 342, 346
181, 192
191–195, 194–195
174–175, 175
182–186, 185–186
176–182, 194–195
175–176
182, 187–190,
173–174
174
173
188–189, 189–190
113
141–144, 142, 148
350–352, 360, 361,366
57–58, 64–65,67
138–139
SROC see summary receiver operating
characteristic staging tests stakeholder involvement standard error
data collection meta-analysis
Steinhauser multiple thresholds model
study design
basic design for test accuracy study
clinical reference standard comparative studies 45–47, 46–47 composite reference standard 44 concepts and definitions 35 delayed verification 44 gold standard latent class analysis 45 multiple groups of participants 39–42, 40 multiple reference standards 42–43, 43 panel-based reference pragmatic versus explanatory studies 48–49 prospective versus retrospective studies 48
risk of bias and applicability assessment 178 study methods subgroups of patients 150 subject headings 112 subject-specific databases 103–104 Summary of findings tables
drawing conclusions
meta-analysis 211
presenting findings 345 summary receiver operating characteristic
comparisons of test accuracy
drawing conclusions 351, 360
individual and summary estimates of test
meta-analysis 208–210, 210, 265, 276
planning a systematic review of test
reviews without meta-analysis 345, 346
see also hierarchical summary receiver
surveillance 31 systematic reviews of interventions 24
tables of findings see Summary of findings tables target condition
data collection 140–145
29–30
12–13
144
224, 239
305–315, 310–311
35–51
38–39
45
45
44–45, 46
137–138
350–352, 353–358
(SROC) plots
334–336, 335
accuracy 330–332, 331
accuracy
operating characteristic model
15
222,
36–39,
407
Index
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target condition (cont’d)
drawing conclusions 360 evaluating medical tests literature searches measures of test accuracy plain language summary planning a systematic review of test accuracy
6–7 presenting findings review questions risk of bias and applicability assessment
187–190 study design
test failures test positives/test negatives
data collection evaluating medical tests 23, 30 measures of test accuracy meta-analysis 219 presenting findings 330–331 review questions 82–83, 91 risk of bias and applicability assessment study design 42–43
text words 110–112 therapeutic monitoring 31 theses databases 104 time frames timing see flow and timing title
plain language summary
35–39, 42–43, 48
147
141–144
25–26
23, 27
100, 120
53–72
380–381, 391
340–346, 342
57–58, 84–86, 91–92
54, 56, 64–65,65
380
192
planning a systematic review of test accuracy
title searches training treatment efficacy treatment selection triage tests trial registries
data collection
literature searches two-group/two-gate studies
uncertainty
drawing conclusions
measures of test accuracy 60
plain language summary
presenting findings 332 unexpected findings 151 univariate tests 214 unverified participants 192
validity variance–covariance matrix 255, 256, 260,261,
verification bias
see also partial verification bias
web searching Wilson score interval
Youden’s index
119
14–15
31
30
78, 82
133
107–108, 115
40–41, 40
351, 363, 373
391
359
287, 292, 297, 301, 303, 303
241–242, 391
106–107
61
63–64, 308–311, 310–311
7, 8
408