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54 Aoife M. Brennan et al.
rapidly destroyed by the immune system prior to establishing colonization, leading to variable delivery. A further disadvantage is a potential for systemic cytokine release and infection with replication-competent organisms.
These limitations may be overcome with further development of our synthetic biol­ogy toolbox, as discussed previously. These tools have been used to engineer bacterial cells to achieve enhanced tumor targeting [17,146–148]. One approach to enhance tumor targeting is to display a protein such as an antibody on the bacterial cell surface that binds to epitopes on tumor cells. The display of histone-like protein A (HlpA) from Streptococcus on E. coli Nissle demonstrated notable binding to colorectal tumor cells where HlpA binds to upregulated tumor surface HSPG [83] . Synthetic nanobody-based adhesins have been developed and surface-displayed on E. coli Nissle and have demon­strated tumor colonization with a significantly lower dosage as well as lower retention in healthy organs in animal models [147]. These advances may lead to the ability to con­sistently colonize GI-associated tumors or liver metastasis following oral administration.
Preventing infection with the engineered microbe is important, particularly for approaches that require systemic delivery. Auxotrophic gene knockouts such as thyA and dapA have been engineered into bacterial cells and have not only prevented growth outside of the TME but also limited growth inside solid tumors [63]. In certain situations, controlled growth within the tumor is desirable, and the ideal auxotroph or kill switch would allow controlled replication with the tumor but limit replication in healthy tissue and the environment. Addressing this particular challenge is an area of ongoing development.
Ultimately, the design of an engineered bacterial therapeutic for cancer is multifac­torial, incorporating chassis selection, effector function, safety, and patient consider­ations, including the route of administration.
5. Regulatory considerations in the development of engineered bacteria as therapeutics
Delivering on the therapeutic potential of engineered bacteria requires the trans­lation of the preclinical data accumulated in animal models into the clinic and the initi­ation of human clinical trials. This process requires the approval of relevant national authorities as well as ethics committees. As with other therapeutic products, approval, and licensure requires the demonstration of safety, efficacy (from well-controlled clinical trials), and quality i.e., reliability, robustness, and consistency of each batch produced (ICH M4 Guidelines).
Bacterial therapeutics are classified as LBPs and genetically modified bacteria are clas­sified as recombinant LBPs. In the United States, recombinant LBPs are regulated by the FDA through the Center for Biologics Evaluation and Research. In 2016, the FDA issued a guidance document describing the regulatory considerations for conducting
clinical trials with LBPs [82]. More recently, the European Pharmacopeia published a
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monograph setting the quality standards for LBPs for human use, effective in April 2019 [149].
The first step in the clinical evaluation of any potential therapeutic product is the clin­ical trial application or investigational new drug (IND) application. Consultation prior to submission of the application to initiate clinical trials and regularly throughout develop­ment is critical in this new area, as minimal precedents exist and current regulatory guid­ance includes general considerations only. Each LBP contains unique properties, including the route of administration, pathogenicity potential, colonization, clearance, microbial products, and other factors that influence the data required to support the benefit-risk evaluation by regulators. For example, bacterial components such as lipo­polysaccharides will result in different risks for an oral product compared to a product that is intended to be administered intravenously or intratumorally. Among the most important safety risks to consider when assembling the clinical trial application or IND is the potential for infection with the engineered organism, which may be influenced by the biodistribution of the product. Preclinical distribution studies follow­ing administration that are representative of the intended clinical route may be required to support a clinical trial. Demonstrating sensitivity to commonly prescribed antibiotics is also important to guide the treatment of potential infections in the clinic.
In common with all investigational medicinal products, the manufacturing facility where the engineered microbe is manufactured should operate under Good Manufactur­ing Practices. A number of unique manufacturing considerations do apply when prepar­ing to conduct a clinical trial with engineered bacteria, which include the following:
The genetic sequence of exogenously introduced genes, including a high-quality, com-
plete genome sequence for the engineered clinical candidate strain will be required.
Evidence supporting the stability of strain modifications over time, particularly during
fermentation, should be considered.
The ability of the organism to replicate or persist in the environment should be
described along with any biocontainment strategies incorporated into the engineering.
Assays to determine the absence of contamination from adventitious agents are
required to be developed, which may be challenging with an LBP. The required sen-
sitivity (particularly for products intended for nonoral routes of administration) often
requires culture-based methodology. Following completion of the IND process in the United States, regional ethics committees or institutional review boards will review the clinical protocol and other study documents. Because engineered bacteria are considered biological agents, reviews by institutional biosafety committees are also frequently required. The purpose of this committee is to assess the environmental risk of the product and the ability of the engineered bacteria to survive and replicate in the environment as well as any potential toxicity should an unintended person be exposed. This environmental review differs globally, thus the pro­cess must be understood for the specific region in which the clinical trial will take place.
55Engineered microbes for cancer immunotherapy
56 Aoife M. Brennan et al.
6. Conclusion
The field of cancer immunotherapy started with the injection of pathogenic bac­teria intratumorally, but the broad adoption of bacteria in cancer therapeutics has histor­ically been limited by difficulty finding a balance between efficacy and safety. Synthetic biology now provides tools to precisely engineer bacteria to address some of these his­torical limitations and multiple academic groups and biotech companies are actively pur­suing this area of research. Ongoing clinical programs will provide important learnings from trials that include engineered strains with different chassis organisms, route of administration, and genetic modifications across a range of indications. The current con­fluence of advancing synthetic biology tools, greater understanding of the immunobiology of cancer, the potential of bacteria to address multiple mechanisms simultaneously as well as a regulatory pathway that is developing sets the stage for rapid advancement in this space to address difficult cancers in patients.
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CHAPTER THREE
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Polymeric scaffolds for antitumor immune cell priming
Khushbu Bhatta, Loek J. Eggermontb, and Sidi A. Bencherif
a
Department of Pharmaceutical Sciences, Northeastern University, Boston, MA, United States
b
Department of Chemical Engineering, Northeastern University, Boston, MA, United States
c
Harvard John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, United States
d
Department of Bioengineering, Northeastern University, Boston, MA, United States
e
Sorbonne University, UTC CNRS UMR 7338, Biomechanics and Bioengineering (BMBI), University of Technology of
Compie`gne, Compie`gne, France
b,c,d,e
Contents
1. Introduction 63
2. Polymeric materials and scaffold systems 66
3. Polymeric scaffolds for DC priming and activation 75
4. Polymeric scaffolds for T-cell activation 81
5. Conclusion and future perspectives 86
References 87
1. Introduction
Cancer is a life-threatening disorder, and is the second-leading cause of death worldwide, with an estimated 606,520 deaths projected in the USA alone for 2020
[1]. Traditional treatments such as radiation, chemotherapy, and targeted cancer therapies
have been associated with limited efficacy, leading to drug resistance, toxicity, and min­imal survival benefit [2–4]. Immunotherapy has emerged as a breakthrough therapeutic option for cancer. The advent of immune checkpoint inhibitors (ICIs), cancer vaccines, and chimeric antigen receptor (CAR) T cell-based adoptive therapies have revolution­ized treatment paradigms. Even though the concept of immunotherapy has existed for centuries, the approach of harnessing the body’s immune system to eradicate tumors gained momentum after the impressive clinical results of ICIs [5,6].
Dendritic cells (DCs) are antigen-presenting cells (APCs) that play a central role in orchestrating antitumor immune responses [7]. During tumor development, they cap- ture, process, and present tumor antigens on major histocompatibility complex (MHC) proteins [8]. Thereafter, activated DCs travel to draining lymph nodes to prime antigen-specific naı¨ve T cells by presenting the antigen-MHC complex along with
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All rights reserved.https://doi.org/10.1016/B978-0-323-90949-5.00003-6
63