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397Proteomic biomarker technology for cancer immunotherapy

CHAPTER TWELVE
Personalized cancer immunotherapy
Amrendra Kumar
a
Department of Pathology, The Ohio State University, Columbus, OH, United States
b
The Arthur G. James Cancer Hospital and Richard J. Solove Research Institute, The Ohio State University, Columbus,
OH, United States
a,b
, Kevin P. Wellerb, and Anna E. Vilgelm
a,b
Contents
1. Part I. identifying immune checkpoint blockade therapy-responsive patients 399
1.1 Programmed death ligand 1 (PD-L1) immunohistochemistry 400
2. Biomarkers based on tumor “foreignness” 403
2.1 Tumor mutational burden 403
2.2 Microsatellite instability 403
2.3 Viral antigens 405
2.4 Cancer/testis antigens 405
3. Tumor immune microenvironment and immunotherapy response 406
4. “Omics” technologies in personalized immunooncology 407
5. Immunotherapy response biomarkers not directly measured in tumor 408
6. Integrating biomarkers to reach “precision” and tailor therapy to patient’s unique
immunome 408
7. Part II. highly personalized immunotherapy 410
8. Adoptive T cell transfer: A highly personalized therapy for human cancers 410
9. Tumor-infiltrating lymphocytes: A rich source of tumor specific T cells 411
10. Tumor neoantigens and their role in tumor immunity 414
11. Neoantigen reactive T cells; broadening the landscape of personalized cancer
immunotherapies 417
12. Neoantigen vaccines 418
13. Neoantigen-specific T cells for adoptive cellular therapies 419
14. Concluding remarks 420
References 420
1. Part I. Identifying immune checkpoint blockade
therapy-responsive patients
Immunotherapy has become a staple of modern cancer treatment. Among the most
clinically advanced immunotherapies are immune checkpoint inhibitors that have been
proven effective and relatively safe across a variety of human cancer types. Checkpoint
inhibitors are a class of immunotherapies that reinvigorate antitumor T cell responses by
Engineering Technologies and Clinical Translation Copyright © 2022 Elsevier Inc.
All rights reserved.https://doi.org/10.1016/B978-0-323-90949-5.00012-7
399

400 Amrendra Kumar et al.
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targeting inhibitory checkpoint receptors on immune cells, such as CTLA-4 and PD-1
[1]. Patients that respond to immune checkpoint blockade therapy (ICB) often enjoy
long-term disease control [2]. Furthermore, remarkable responses can be achieved even
in advanced cases of metastatic disease. However, while effective for some patients, ICB
fails in more than half of cancer patients [3]. These patients lose valuable therapeutic window while participating in ICB trials or receiving checkpoint blockade as a standard of
care. Meanwhile, their disease progresses. They are also at risk for dangerous and potentially fatal side effects associated with ICB. This clinical dichotomy of the ICB outcome
calls for a personalized approach where immunotherapy is ideally given only to those
patients that will benefit. This personalized approach, as opposed to the “one-drugfits-all” strategy, will not only improve immunotherapy response rates in the trial, but
will spare immunotherapy-unresponsive patients the physical, emotional, and financial
burden of a treatment failure. The key question is, how to determine if a patient will
respond to checkpoint blockade therapy?
There is a tremendous ongoing effort to identify biomarkers that can predict if a
patient will benefit from immunotherapy. Alas, we are yet to find immunotherapy
response biomarkers that accurately identify immunotherapy candidates. Nevertheless,
as a part of this effort, key molecular and genetic correlates of ICB outcome have been
identified. This information, along with preclinical discoveries using functional genomics
and animal modeling, continues to improve our understanding of tumor immune evasion
and intrinsic ICB resistance. This ever-growing knowledge, in turn, fuels the development of combinatorial strategies to improve ICB outcomes. The promise of personalized
immunotherapy is that ICB responders will be identified and treated, while nonresponders will receive a highly effective combination treatment specifically tailored to
overcome their tumor’s unique immune evasion mechanisms. Below we describe currently used and emerging approaches to predict the outcome of immune checkpoint
inhibition.
1.1 Programmed death ligand 1 (PD-L1) immunohistochemistry
Multiple ICB agents targeting the interaction of T cell inhibitory receptor PD-1 with its
ligand PD-L1 have rapidly emerged and gained FDA approval within the past decade.
The success of these therapies in only a subset of patients has prompted a search for
response-predictive biomarkers. Malignant and nonmalignant cells within the tumor
microenvironment can express PD-L1 to limit the activity of tumor-infiltrating
T cells. Therefore, it seems reasonable to think that tumors that highly express PD-L1
will respond robustly to antibodies targeting PD-1/PD-L1 interaction because
(a) they are dependent on PD-L1 for immune evasion; and (b) there are therapeutic targets present in the tumor. Along with this logic, PD-L1 expression in the tumor was the
first candidate biomarker for anti-PD-1/PD-L1 therapy response [4].
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