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2 Genetics and Diabetic Retinopathy

39

 

 

more that a gene is not linked to the presence of the disease and is taken by convention as evidence that a

marker is not linked to the disease. A LOD score between –2.0 and +3.0 is taken as inconclusive.27

The LOD Score in Greater Detail

If two genetic markers are unlinked, as for example, would be the case if they were on different chromosomes, then the probability that they will appear in any given gamete from an individual is 0.5. This ceiling fraction arises from the consideration that during meiosis, the probability that the maternal and paternal chromosomes will assort together in the gamete is 1 in 2 (the two possibilities are that they assort together or they do not assort together, and each has equal probability). If the markers lie on the same chromosome, the mechanism that can lead to their separation is recombination caused by crossing over during meiosis. The probability of recombination of two genetic markers increases the farther apart on the chromosome that they are. At a maximum, if the markers are at the extreme opposite ends of the same chromosome, then crossing over could lead to these markers being separated every time meiosis occurred and their being assorted independently into gametes as though they had been on separate chromosomes. Thus the maximum recombination fraction is 0.5. The actual recombination fraction is denoted by the symbol y, and it will be less than 0.5. The likelihood of recombination fractions of y and 0.5 are calculated, and a LOD score is defined as log10 (likelihood of observed data if loci are linked at a value of y/likelihood of observed data if loci are linked at a value of 0.5).

Once linkage of a genetic marker to diabetic retinopathy has been established, candidate genes of interest may be identified using expressed sequence tags. An expressed sequence tag is a short sequence of DNA that is complementary to an expressed mRNA molecule found in the tissue of interest. The expressed mRNA molecule is used to synthesize a complementary DNA molecule of which a fragment is called an expressed sequence tag. Expressed sequence tags are useful in discovering genes and in sequencing genes.28

2.4Studies of the Genetics of Diabetic Retinopathy

2.4.1 Clinical Studies

The number of studies exploring possible genetic susceptibility to or protection from diabetic retinopathy is large, and this chapter makes no claim to providing exhaustive coverage of a topic that would require a book unto itself. Rather, our goal is to expose the clinician to an important and expanding field of inquiry in diabetic retinopathy likely to be

the source for future breakthroughs in treatment by virtue of illuminating the underlying basic defects. The interested reader is invited to consult comprehensive reviews to explore the topic in greater detail.6,9

Heritability for diabetic retinopathy has been

reported to be 27% and heritability for PDR has been reported to be 25–52%.29,30 Among South

Asian Indians, the risk of DR is higher in diabetic siblings of probands with DR than in diabetic nonsiblings.4 Some of the differences in epidemiologic aspects of diabetic retinopathy may have a genetic basis, although further study is needed to determine the answer. For example, it has been reported that Hispanic diabetics develop severe DR earlier in their course and progress more rapidly compared with blacks or whites (see Chapter 3).3 In a twin study, concordance of retinopathy was found in 35 of 37 identical twins concordant for type 2 DM but in only 21 of 31 identical twins concordant for type 1 DM, suggesting a stronger genetic effect in type 2 than in type 1 DM.5 In the Diabetes Control and Complications Study, there was an increased risk of severe retinopathy among relatives of retinopathypositive versus retinopathy-negative subjects (odds ratio 3.1, 95% CI 1.2–7.8), suggesting a possible genetic component to retinopathy severity.31

40

D.G. Telander et al.

 

 

In a Mexican-American cohort, more severe diabetic retinopathy in siblings was associated with more severe retinopathy in probands (OR 1.72, 95% CI 1.03–2.88) after accounting for the effects of glycemic control and diabetic duration, but occurrence of diabetic retinopathy showed no such familial aggregation.32

2.4.2 Molecular Genetic Studies

Some of the more important candidate genes and associated polymorphisms linked to diabetic retinopathy will be reviewed below. Tables 2.1, 2.2, 2.3, 2.4, 2.5, and 2.6 list selected polymorphisms, genotypes, and haplotypes found to be risk factors, protective factors, or unassociated with different forms of DR. Inspection of the tables will show multiple inconsistencies across studies for such reasons as differences in case definitions, differences in duration of diabetes in the groups studied, in fractions of the two genders, in allele frequencies in the population samples, in methods of detecting DR grading severity of DR, in the recording and statistical handling of possibly confounding risk factors, and in the control groups used.6,9 For example, the -634C/G polymorphism in the promoter region of

the VEGF gene has been found to be associated with DR and also to be not associated with DR.33–35

Many of the listed genetic associations with forms of diabetic retinopathy have not been replicated, and much work remains to be done in diverse human population samples to identify the strong associations from the weak ones and to exclude spurious associations caused by various weaknesses in study designs.9 The tables we have included are rapidly changing and will be outdated within a short time as further genetic studies of greater statistical power and higher design quality are executed and published.

suggested a diabetic nephropathy locus on chromosome 3q.37–39 In addition, several researchers have

found a locus at chromosome 7q21 associated with an increased risk of nephropathy in diabetes.37,40–42

In this region of chromosome 7q21, Zhang and colleagues found that the T allele of an SNP rs1617640 in the promoter of the EPO gene was significantly associated with PDR and ESRD.43 Of note, EPO encodes the protein erythropoietin, which is a potent angiogenic factor expressed in the kidney and retina. This protein has been found in human vitreous in PDR.44

2.4.4 Aldose Reductase Gene

Hyperglycemia is clearly linked to the microvascular complications of diabetes, and the conversion of glucose to sorbitol by aldose reductase (ALR2) has been shown to be involved in the pathogenesis (see Chapter 1). ALR2 is found in tissues of the eye including the vascular endothelial and retinal pigment epithelial cells.45 Altered expression of the ALR2 gene may play a role in the pathogenesis of diabetic retinopathy. Genetic studies using restriction fragment length polymorphism (RFLP) analysis have inconsistently shown that aldose reductase is associated with diabetic retinopathy (Tables 2.1 and 2.6). Ko et al. have identified one allele (Z–2) of a (CA)n dinucleotide repeat polymorphic marker at the 50 end of the aldose reductase gene in Chinese type 2 diabetic patients having a strong association with early onset of diabetic retinopathy. In Asian Indians as well, the Z–2 allele was found to be associated with any DR, PDR, and DME.46 In Australian type 1 adolescent diabetics, the ALR promoter -106C allele is associated with DR, as is the Z–2 allele.47

2.4.3 EPO Promoter

PDR has been found to have 80–90% concordance rate with end-stage renal disease (ESRD).36 Several candidate gene single-nucleotide polymorphisms (SNPs) have been found and linkage analysis has

2.4.5 VEGF Gene

Vascular endothelial growth factor (VEGF) has been found to be the primary stimulus for new blood vessel growth and vascular hyperpermeability in diabetic retinopathy.48,49 Many clinical studies have demonstrated that VEGF concentrations were markedly elevated in both the vitreous and aqueous fluid of

Table 2.1 Genetic markers associated with any diabetic retinopathy (i.e., risk markers)

 

 

Type DM,

Odds ratio (95% CI),

 

 

 

 

Genetic marker

Polymorphism

ethnicity, N

sample size

X2

P

References

 

634CC*

 

 

 

 

 

Awata et al.33

VEGF gene

2, Japanese, 268

3.20 (1.45, 7.05)

 

 

0.0046

Promoter region of

Genotype for (CA) repeat:Z–2/X where

1, British, 322

 

17.0

<0.0001

Demaine et al.75

 

n

 

 

 

 

 

 

aldose reductase gene

X is any allele other than Z+2

 

 

 

 

 

 

Promoter region of

Z–2 allele for (CA)n repeat

2, Asian Indian, 214

2.023 (1.06, 3.85)**

 

 

0.029

Kumaramanickavel

aldose reductase gene

 

 

 

 

 

 

et al.46

Promoter region of

Z–4 allele for (CA)n repeat

T2, Chinese, 384

2.44 (1.20, 4.98)**

 

 

<0.05

Lee et al.76

aldose reductase gene

 

 

 

 

 

 

 

Promoter region of

Z–2 allele

1, Australian, 164

5.49 (3.39, 8.90)**

 

 

<0.0005

Kao et al.47

aldose reductase gene

106CC genotype

 

 

 

 

 

 

Promoter region of

1, Australian, 164

2.47 (1.30, 4.67)

 

 

0.005

Kao et al.47

aldose reductase gene

 

 

 

 

 

 

 

(CA)n IGF-1 gene

Heterozygosity for the 192 or 194 base pair

2, Dutch, 1,146

1.8 (1.0, 3.2)

 

 

0.04

Rietveld et al.55

promoter

alleles

 

 

 

 

 

 

polymorphism

 

 

 

 

 

 

 

SDH

G-888C

2, Polish, 154

1.73 (1.06, 2.83) for NPDR

 

 

<0.05

Szaflik et al.77

Mitochondrial DNA

Haplogroup T

T2, Austrian,149

3.60 (1.02, 12.68)

 

 

0.046#

Kofler et al.78

haplogroups

 

 

 

 

 

 

 

Endothelial nitric oxide

Intron 4b/b genotype

T2, West African, 384

2.4 (1.39, 4.09)

 

 

0.0013

Chen et al.66

synthase gene

 

 

 

 

 

 

 

eNOS promoter

Haplotypes 112 (Glu298/4b/

2, Tunisian, 383

112 (1.34 [1.03, 1.73]) and 222

 

 

112

Ezzidi et al.79

 

-786C) and 222 (Asp298/4a/

 

(2.55 [1.01, 6.44])

 

 

(P ¼ 0.027)

 

 

-786C)

 

 

 

 

and 222

 

 

 

 

 

 

 

(P ¼ 0.048)

 

Inducible nitric oxide

Pentanucleotide STR

T2, Asian Indian, 199

2.03 (0.96, 4.35)

 

 

0.044

Kumaramanickavel

synthase

upstream of transcription start site (allele

 

 

 

 

 

et al.80

 

210 bp)

 

 

 

 

 

 

Receptor for AGE gene

-429C allele

2, Caucasian, 215

2.33 (1.30, 4.16)**

 

 

0.012

Hudson et al.81

promoter region

 

 

 

 

 

 

 

Manganese superoxide

VV genotype of theV16A polymorphism

2, Slovenian, 426

2.1 (1.2, 3.4)

 

 

0.006

Petrovic et al.82

dismutase gene

 

 

 

 

 

 

 

Methylene

C677T polymorphism

2, Japanese, 131 with

5.33 (1.50,19.0) for NPDR

 

 

<0.05

Maeda et al.74

tetrahydrofolate

 

HbA1c 6.5%

 

 

 

 

 

reductase gene

 

 

 

 

 

 

 

*At position 634 relative to the transcription start of the VEGF gene, C is present on both alleles.

#When subjected to a Bonferroni correction, the statistical significance vanished. **Not given in paper; calculated by DJB from data in the paper.

Retinopathy Diabetic and Genetics 2

41

42

 

 

 

 

D.G. Telander et al.

 

 

 

 

Table 2.2 Genetic markers associated with diabetic macular edema (i.e., risk markers)

 

 

 

 

 

 

 

 

 

 

 

 

Type DM,

Odds ratio (95% CI),

 

 

 

Genetic marker

Polymorphism

ethnicity, N

sample size

X2

P

References

VEGF gene

C-634G*

2, Japanese,

1.81 (1.01, 3.26)

 

0.047

Awata

 

 

378

 

 

 

et al.83

Endothelial nitric oxide

Intron 4a allele

2, Japanese,

 

NG

0.006

Awata

synthase gene

 

226

 

 

 

et al.84

Endothelial nitric oxide

T-786C polymorphism

2, Japanese,

 

NG

0.029

Awata

synthase gene

(-786C allele)

226

 

 

 

et al.84

*At position 634 relative to the transcription start of the VEGF gene, G is present on one allele and C is present on the other. NG=not given.

Table 2.3 Genetic markers associated with severe nonproliferative or proliferative diabetic retinopathy (i.e., risk markers)

 

 

 

Odds ratio (95%

 

 

 

Polymorphism/genotype/

Type DM,

CI) or Chi-

 

 

Genetic marker

haplotype

ethnicity, N

square statistics

P

References

 

 

 

 

 

 

 

VEGF gene

c.-160CC* genotype

1 and 2,

10.5

(2.3, 47.7)

0.0003

Churchill et al.85

 

 

British, 106

 

 

 

 

VEGF gene

c.-152AA genotype

1 and 2,

3.5 (1.5, 7.7)

0.0022

Churchill et al.85

 

 

British, 106

 

 

 

 

VEGF gene

c.-116AA genotype

1 and 2,

7.9 (3.1, 19.9)

<0.0001

Churchill et al.85

 

 

British, 106

 

 

 

 

VEGF gene

c.-406C allele

1 and 2,

2.5 (1.20, 5.23)

0.027

Ray et al.51

 

 

British,267

 

 

 

 

VEGF gene

-160C/-152A/-116A

1 and 2,

3.34

(1.89, 5.91)

0.0001695

Churchill et al.85

 

haplotype

British, 106

 

 

1.62 10 5

 

VEGF gene

-460C/-417T/-172C/-

1 and 2,

29.9

(3.91, 229)

Churchill et al.85

 

165C/-160C/-152A/-

British, 106

 

 

 

 

 

141A/-116A/+405C

 

 

 

 

 

 

haplotype

 

 

 

 

 

VEGF gene

c.-634CC

2, Caucasian,

1.85

(1.2, 2.8)

0.04

Errera et al.34**

 

 

501

 

 

 

 

VEGF gene

Homozygosity for rs833070

1, Japanese,

1.67

(1.01, 2.54)

0.047

Nakanishi and

 

 

175

 

 

 

Watanabe86

VEGF gene

Homozygosity for

1, Japanese,

1.67

(1.01, 2.74)

0.047

Nakanishi and

 

rs2146323

175

 

 

 

Watanabe86

Promoter region of

-2578 A/A genotype

2, Japanese,

7.7 (1.8, 30.9)

0.002

Nakamura et al.52

VEGF gene

 

469

 

 

 

 

Promoter region of the

Homozygous for T allele of

1 and 2, US

2.01

(1.23,3.29)

0.036

Tong et al.43

erythropoietin gene

an SNP rs1617640

Caucasian,

 

 

 

 

 

 

613

 

 

 

 

TNF beta gene

Allele 8 (111 base pair)

2, Asian

NG

 

0.003

Kumaramanickavel

 

 

Indian,207

 

 

 

et al.93

PPARG gene

-2819G allele

2, Italian, 112

2.30

(1.09–4.83)

0.02

Costa et al.87

 

 

females

 

 

 

 

ICAM-1 gene

EE genotype of K469E

2, Slovenian,

2.0; 95%

0.013

Petrovic et al.82

426confidence interval [CI]

¼1.1–3.5

Basic fibroblast growth

-553T/A

2, Slovenian,

2.0, 95%

0.03

Petrovicˇet al.88

factor (bFGF) gene

 

206

confidence

 

 

 

 

 

interval

 

 

Solute carrier family 2,

rs841846

1, African

¼ 1.0–3.9

0.000160

10

LR

Roy et al.

member 1

 

American,

 

 

 

 

 

437

 

 

 

 

 

 

 

 

 

2 Genetics and Diabetic Retinopathy

 

 

 

43

 

 

 

 

 

 

Table 2.3 (continued)

 

 

 

 

 

 

 

 

Odds ratio (95%

 

 

 

Polymorphism/genotype/

Type DM,

CI) or Chi-

 

 

Genetic marker

haplotype

ethnicity, N

square statistics

P

References

 

 

 

 

 

 

Major histo

rs2523608

1, African

LR

0.00599

Roy et al.10

compatibility complex,

 

American,

 

 

 

class 1, B

 

437

 

 

 

Major histo

*0201/0302 genotype

1, Swedish, 56

X2=15

0.01

Agardh et al.56

compatibility

 

 

 

 

 

complex, DQA1 locus

 

 

 

 

 

FMS-like tyrosine

rs622227

1, African

LR

0.00735

Roy et al.10

kinase 1

 

American,

 

 

 

 

 

437

 

 

 

Angiotensin convertin

DD genotype

2, Tunisian,

3.516

0.001

Feghhi et al.70

enzyme insertion/

 

230

 

 

 

deletion

 

 

 

 

 

polymorphism

 

 

 

 

 

 

 

 

 

 

 

*At position 160 relative to the transcription start of the VEGF gene, C is present on both alleles. **Other studies in other populations have not confirmed this association.33,89

LR ¼ logistic regression was used rather than odds ratios. NG ¼ not given in the paper.

Table 2.4 Genetic markers associated with sight-threatening retinopathy (diabetic macular edema or proliferative diabetic retinopathy)

 

 

 

Odds ratio (95% CI),

 

 

Genetic marker

Polymorphism

Type DM, ethnicity, N

sample size

P

References

 

 

 

 

 

 

AGER gene

c.-374A

1, Scandinavian, 742; 2,

1.65 (1.11–2.45); 2957

0.01

Lindholm et al.90

polymorphism

 

Scandinavian, 2957

DR,

 

 

 

 

 

206 NDC

 

 

Polymorphism for

Z–2 allele

2, Asian Indian, 214

NG

0.004

Kumaramanickavel

(CA)n repeat in

 

 

 

 

et al.46

promoter region of

 

 

 

 

 

aldose reductase gene

 

 

 

 

 

 

 

 

 

 

 

C=Caucasian; NDC=non-diabetic controls; NG=not given in the paper.

Table 2.5 Genetic markers associated with diabetes without retinopathy (i.e., protective markers)

 

 

 

Odds ratio

 

 

 

 

 

Type DM,

(95% CI),

 

 

 

Genetic marker

Polymorphism

ethnicity, N

sample size

X2

P

References

VEGF genotype

c.-160CT*

1 and 2,

8.63 (1.96,

 

0.0008

Churchill et al.85

 

 

British, 106

37.95)

 

 

 

 

c.-152AG

1 and 2,

1.87 (1.04,

 

0.0353

Churchill et al.85

 

 

British, 106

3.35)

 

 

 

 

c.-116AG

1 and 2,

4.8 (2.6, 8.8)

 

<0.0001

Churchill et al.85

 

 

British, 106

 

 

 

 

VEGF gene haplotype

-160T/-152G/-116G

1 and 2,

12.5 (1.61,

 

0.006181

Churchill et al.85

associations

 

British, 106

100)

 

 

 

 

-460C/-417T/-172C/-

1 and 2,

20 (2.86, 100)

 

0.000373

Churchill et al.85

 

165C/-160C/-152A/-

British, 106

 

 

 

 

 

141A/-116G/+405G

 

 

 

 

 

Genotype for (CA)n

Z+2/Y where Y is any

1, Caucasian,

 

30.1

<0.00001

Demaine et al.75 (see

repeat in promoter

allele other than Z–2

229

 

 

 

also91,92

region of aldose reductase gene

44

 

 

 

 

 

 

D.G. Telander et al.

 

 

 

 

 

 

 

 

Table 2.5 (continued)

 

 

 

 

 

 

 

 

 

 

 

Odds ratio

 

 

 

 

 

Type DM,

(95% CI),

 

 

 

Genetic marker

Polymorphism

ethnicity, N

sample size

X2

P

References

EDN1 Lys198Asn

EDN1 Asn/Asn

2, Chinese,

0.19 (0.07,

 

0.002

Li et al.21

polymorphism

 

343

 

0.53), 216

 

 

 

 

 

 

 

DR, 127

 

 

 

 

 

 

 

DM

 

 

 

 

 

 

 

controls

 

P ¼ 0.015

 

Endothelial nitric

(haplotype 122 (Glu298/

2, Tunisian,

0.51 (0.30,

 

Ezzidi et al.79

oxide (eNOS) gene

4a/-786C)]

383

 

0.88)

 

 

 

promoter

 

 

 

 

 

 

 

TNF-b gene

STR upstream of

2, Asian

 

0.236 (0.087,

 

0.002

Kumaramanickavel

 

promoter region: allele

Indians,

0.638)**

 

 

et al.93

 

4 (103 base pair) with

207

 

 

 

 

 

 

(GT)9 repeat

 

 

 

 

 

 

SUMO4 gene

M55V

1, Caucasian,

0.37, (0.32,

 

0.004

Rudofsky et al. 94

 

 

223

 

0.43)

 

 

 

Plasminogen activator

5G/5G genotype

2, Pima

 

 

8.22

0.016

Nagi et al.95

inhibitor 1 gene

 

Indians,

 

 

 

 

 

 

171

 

 

 

 

 

Receptor for AGE

GS genotype for the

2, Asian

 

0.34 (0.136,

 

0.03

Kumaramanickavel

gene

Gly82Ser

Indians,

0.863)**

 

 

et al.64

 

polymorphism in exon

200

 

 

 

 

 

 

3 (Ser 82 allele)

 

 

 

 

 

 

 

*At position 160 relative to the transcription start of the VEGF gene, C is present on one allele and T on the other allele.

**Not given in paper; calculated by DJB from data in the paper.

 

 

 

 

 

Table 2.6 Negative studies looking for associations with various forms of diabetic retinopathy

 

 

 

 

 

 

 

 

 

Specific polymorphisms (P) and

 

 

Type

 

 

Genetic marker

haplotypes (H)

 

Type DM, ethnicity, N

retinopathy

References

 

 

 

 

 

 

MMP-2 gene

-168G/T, -735 C/T, -790T/G, -

2, Czech, 490

PDR

 

Beranek et al.96

 

1306C/T, and -1575G/A

 

 

 

 

 

MMP-9 gene

-1562C/T, R279Q

 

2, Czech, 490

PDR

 

Beranek et al.96

IL-6 gene promoter

-174G>C variant

 

1 and 2, German, 733

Any DR

Rudofsky et al. 97

Promoter region of VEGF

-634C/G polymorphism

 

2, Japanese, 469

PDR

 

Nakamura et al.52

gene

 

 

 

 

 

 

 

Promoter region of VEGF

-634C/G polymorphism

 

2, Asian Indian, 208

Any DR

Uthra et al.35

gene

 

 

 

 

 

 

 

Promoter region of VEGF

-634C/G polymorphism

 

2, Slovenian, 555

PDR

 

Petrovic et al.98

gene

 

 

 

 

 

 

 

Tumor necrosis factor

rs1800629, rs1041981, and

2, Chinese, 194

Any DR

Wang et al.99

gene

rs2857713 polymorphisms

 

 

 

 

 

Endothelial nitric oxide

G894T polymorphism

 

2, West African, 384

Any DR

Chen et al.66

synthase gene

 

 

 

 

 

 

 

Endothelial nitric oxide

Intron 4a/b polymorphism

2, Japanese, 215

Any DR

Neugebauer

synthase gene

 

 

 

 

 

 

et al.100

Receptor for AGE gene

Gly82Ser polymorphism in

2, Chinese, 156

Any DR

Liu and Xiang63

 

exon 3 (Ser 82 allele)

 

 

 

 

 

 

Receptor for AGE gene

-429T/C polymorphism

 

2, Caucasian, 215

Any DR

Hudson et al.101

promoter region

 

 

 

 

 

 

 

Angiotensin II type 1

A1166C polymorphism

 

2, Chinese, 827

Any DR

Thomas et al.102

receptor gene

 

 

 

 

 

 

 

Angiotensin I-converting

287 base pair Alu-repetitive

1 and 2, diverse, 2010

Any DR

Fujisawa et al.68

enzyme gene

sequence in intron 16

 

 

 

 

 

 

 

insertion/deletion

 

 

 

 

 

 

 

polymorphism

 

 

 

 

 

 

Hereditary

C282Y polymorphism

 

2, Australian,1245

Any DR

Davis et al.103

hemochromatosis gene