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Automated Image Detection of Retinal Pathology

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3

Detecting Retinal Pathology Automatically with Special Emphasis on Diabetic Retinopathy

Michael D. Abramoff` and Meindert Niemeijer

CONTENTS

3.1

Historical Aside . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

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3.2

Approaches to Computer (Aided) Diagnosis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

68

3.3

Detection of Diabetic Retinopathy Lesions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

70

3.4

Detection of Lesions and Segmentation of Retinal Anatomy . . . . . . . . . . . . . . . .

71

3.5

Detection and Staging of Diabetic Retinopathy: Pixel to Patient . . . . . . . . . . . .

71

3.6

Directions for Research . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

72

 

References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .

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3.1Historical Aside

The idea of computer assisted and computerized detection of retinal pathology has a long history, starting in the 1970s. The earliest paper on retinal vessel segmentation of normal and abnormal vessels was published in 1973 [1]. Nevertheless, clinical application of such systems was to remain nil for an extended period of time. The reasons for this were common to most proposed systems for computer diagnosis, artificial intelligence, medical expert systems or what the fashionable term of the day might be, even outside of ophthalmology. Essentially, there was a lack of scientific evidence for disease categories and characteristics, based as they were on the implicit or explicit knowledge of one or a limited number of clinicians. At many different institutions in the world, elegant systems were designed and implemented. If a clinician from another institution came over to take a look and disagreed with the diagnosis, there would be no mechanism to decide which clinician, if any, was right. It is this fact that prevented application by anyone but the clinicians involved in the design of the system. In addition, these systems were solutions in search of a problem, not addressing diagnostic problems that were relevant to clinical practice. At that moment it was not yet appreciated that the balance of diagnostic accuracy versus

67

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system efficiency differs according to clinical need. For early detection of a disease by mass screening, high throughput at reduced accuracy is acceptable, while management of a condition, once diagnosed, requires the integration of large amounts of clinical data, and a high accuracy, with little need for high throughput. From here on, this chapter will mostly deal with early detection of eye disease.

For clinicians to appreciate the potential for these systems, several things had to change. Finally, in the 1980s and early 1990s, several positive circumstances became aligned. Most important, evidence based medicine, meaning clinical diagnoses and disease management based on scientific, well designed studies, and not on oral tradition, gained traction. Specifically in ophthalmology, the Diabetes Control and Complications Trial (DCCT, 1983–1993) [2] and the Early Treatment Diabetic Retinopathy Study (ETDRS, 1979–1989) [3–8], the largest clinical trials of their time, were monumental. As the reader may be aware, the reason we are discussing automatic screening and screening for diabetic retinopathy at all is because these trials showed that it was rational to look for early signs of retinopathy. If early diagnosis were possible, but no effective treatment had been available, there would be no rationale for screening.

Second, digital imaging of the retina became mainstream. Even though some of the most recent papers, including by our group, are still based on scanned slides because there is so much historical data available, it is clear that these systems can only work efficiently if digital images are available.

Finally, clinical data from representative patient populations, i.e., retinal photographs coupled with clinical readings, started becoming available to image analysis groups that previously had little or no access to clinicians. A pioneer was Hoover, who made available a set of 81 retinal images on the Internet to any interested researcher [9]. This contribution has allowed major strides to be made in vessel segmentation and optic disc localization [10], later enhanced by our DRIVE dataset [11]. Also, we and likely others as well have shared their expert annotated lesion image sets with other researchers on an informal basis. This sharing of clinical data is currently the most challenging issue. Though there are many advantages to sharing data, issues related to patient privacy, regulatory issues, for example, HIPAA in the United States or CBP in the Netherlands, investigational review boards requiring post hoc informed consent, fear of “losing the edge” in publishing papers, as well as patents based on supervised algorithms and therefore in part based on these datasets make this a contested area. To mitigate this, we have recently organized the first online challenge under the ROC (for Retinopathy Online Challenge) at http://roc.healthcare.uiowa.edu, and we hope to organize many of these in the future.

3.2Approaches to Computer (Aided) Diagnosis

A system for computer aided diagnosis of the retina can either decide between disease and nondisease, i.e., diagnosis or screening, or can decide the progression of

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disease in the same patient between two time points, i.e., progression measurement or staging. Such a system can be built with what I term a bottom-up approach: to simulate as closely as possible the diagnosis or staging according to clinical standards as performed by human experts. For example, a system to diagnose diabetic retinopathy will detect the lesions that are known to clinicians to be related to diabetic retinopathy, such as hemorrhages and microaneurysms, and use the knowledge about the presence or absence of these lesions to estimate the probability of the presence of diabetic retinopathy. The advantages of this bottom-up approach are:

face validity, i.e., clinicians trust the system because it mimics to some degree what they do daily, easing translation of such a system into clinical practice.

availability of evidence showing that these classifications are valid, in other words, allow progression or outcome or need for intervention to be measured adequately. This avoids the need to evaluate the system against measures of disease or severity. Examples include the ETDRS [6] and the International Disease Severity Scale of diabetic retinopathy [12] gradings for diabetic retinopathy.

The disadvantages of the bottom-up approach are:

a need to mimic the human visual system as closely as possible.

a possibility of bias: the human expert may not be the optimal system for diagnosis or staging and not be fully knowledgeable or aware of all the features in the image.

inflexibility: in the case in which imaging modalities, such as 3D Optical Coherence Tomography, are developed, human experts may not yet know what the important features are, and there is nothing to be mimicked.

Most research on computer (aided) diagnosis and staging from retinal images has used the bottom-up approach.

What we will term the top-down approach is to start with images in the one hand and diagnoses/stages or some other measurement of clinical outcome in the other, and design the system in an unbiased fashion by searching the feature detector space for the optimal characteristics of the image to predict the measurement of clinical outcome. In other words, those features of the images that are used by clinicians are simply ignored, and the system is optimized against the measurement of clinical outcome, without an intervening stage of human expert-based lesion detection.

The advantages are:

theoretically, such a system has optimal performance that a bottom-up system cannot reach.

if new characteristics or features are found that were not previously appreciated, these can help guide clinicians or researchers understand why these characteristics are so important.

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the system can be used on new imaging modalities, where clinicians do not (yet) know what is relevant for diagnosis or progression.

The disadvantages are:

the system may not have face validity, making clinicians reluctant to trust it in clinical practice.

the space of potential feature detectors may be huge, and intractable computationally.

To our knowledge, no systems based on such a top-down approach for diagnosis or staging of retinal disease from retinal images have been published. In the remainder of this chapter, we will therefore limit ourselves to a brief review of bottom-up systems.

3.3Detection of Diabetic Retinopathy Lesions

We briefly review here the characteristic lesions that occur on the retina affected in diabetic retinopathy [8], and their approximate frequency in a typical screening population, in which 5 to 25% have some form of diabetic retinopathy [5; 8; 13–15].

so-called “red lesions,” namely microaneurysms and intraretinal hemorrhages (frequency 3:5%).

so-called “bright lesions,” namely exudates and cotton wool spots (most likely intraretinal infarcts) (frequency 1:6%).

retinal thickening if present without bright or red lesions (frequency 1%).

vascular beading (caliber changes of the vessels) (frequency 1%).

intraretinal microvascular abnormalities (IRMA) (frequency 1%).

new vessel growth on the optic disc (neovascularization of the disc or NVD) (frequency < 0:1%).

new vessel growth elsewhere (NVE) (frequency < 0:1%).

vitreous or subhyaloid hemorrhage (frequency < 0:1%).

In previous papers, other authors as well as our group have referred to microaneurysms and intraretinal hemorrhages as “red lesions,” to exudates and cotton wool spots as “bright lesions,” and IRMA, NVD, and NVE as “neovascularizations.” In most regions in the world, screening is performed with nonstereo digital cameras, which means that it is impossible to detect retinal thickening if no bright or red lesions are present. Neovascularizations are rare, but are important because they need urgent referral for management by an ophthalmologist. In the next section, we review the literature on how each of these objects can be detected.

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3.4Detection of Lesions and Segmentation of Retinal Anatomy

Research of methods for segmentation of retinal vessels shows that the most recent methods can segment over 99% or more of the larger vessels (arbitrarily stated here as > 2 pixels wide) [9; 11; 16–28], even in retinal images that exhibit some to severe retinopathy. The main research emphasis is on making these methods more robust in the face of more severe retinal disease, making them independent of image scale as a parameter, improving the time and memory efficiency of the algorithms, and finally detecting vessel abnormalities [29; 30].

Segmentation of red lesions (microaneurysms and hemorrhages) has also proceeded rapidly, to the point where combined sensitivity/specificity of 95%/95% are reported [16; 31–39].

Bright lesions (exudates and cotton wool spots) have received less attention, but even there, detection rates of up to 95% have been reported [40–46].

Neovascularizations have usually been grouped with red lesions, but merit a separate algorithm, because these can be subtle, which to date has not yet been published.

Many authors have successfully studied the localization of retinal landmarks, including the optic disc, large vessels, and fovea [16; 17; 42; 47–52]. In summary, as of 2007, detection of most lesions is possible with a degree of accuracy that compares favorably to human experts. We have not dealt with determination of image quality, a very important subject that is briefly discussed in Chapter 6 in regard to microaneurysm detection.

3.5Detection and Staging of Diabetic Retinopathy: Pixel to Patient

Either implicitly or explicitly, any bottom-up system must have stages where pixels are classified into lesions or textures. Lesions or textures are detected in individual images, the presence or absence of different lesions or textures is used to determine an estimate for the presence or stage of the retinopathy for a patient. Complete systems have been published, but the authors usually have not dealt explicitly with how pixel features, lesion or texture features, and lesion location estimates are combined into this patient level estimate statement [37; 41; 44; 50; 53–55]. We have designed a supervised method for combining the output of bright-lesion and image quality algorithms and tested it on 10 000 exams (40 000 retinal images) from a community diabetic retinopathy screening project. Retinal images came from a variety of nonmydriatic camera types, as is typical for screening projects, and were read by only a single reader. The results of this preliminary study showed that this system could obtain an area under the ROC (receiver operating characteristic) curve of 0.84 [56]. Meanwhile we have made further improvements to the system, and at ARVO 2008