- •Биологическая химия
- •060101 – Лечебное дело
- •Часть II
- •Contents
- •I. Theoretical part
- •1. Lipids metabolism
- •1.1. Classification of lipids
- •2. Glycolipids (basically glycosphingolipids).
- •Galactosyl ceramide
- •Cholesterol
- •1.2. Digestion and absorption of fats
- •Lipolysis of triglycerides in adipose tissue
- •1.3. Fatty acids oxidation
- •2. Transport of fa inside mitochondrion.
- •3 Ketocyl CoA tyolase Palmitic acid preformed rest Palmityl-CoA Acetyl-CoA
- •Oxidation of unsaturated fatty acids
- •Violations of fatty acids oxidation
- •Acetyl-CoA metabolism
- •1.4. Lipogenesis
- •Regulation of fatty acids synthesis and break down
- •1.5. Metabolism of phospholipids
- •1.6. Essencial fatty acids. Eicosanoids
- •1.7. Cholesterol metabolism
- •Distribution and functions of cholesterol
- •Cholesterol biosynthesis
- •1. Conversion of active acetate into mevalonic acid.
- •2. Squalene formation from mevalonic acid.
- •Regulation of cholesterol synthesis
- •Cholesterol esters metabolism
- •Synthesis of bile acids
- •1.8. Regulation of lipid metabolism
- •1.9. Violations of lipid metabolism
- •Violation of fats adsorption processes:
- •Test questions
- •2. Proteins metabolism
- •2.1. Pathways of proteins degradation
- •2. Digestion of proteins.
- •The selectivity of peptidases
- •2.2. Amino acids metabolism
- •The reactions of amino groups
- •Intramolecular deamination.
- •Reactions of the carboxyl group
- •2. Aminoacyladenylate formation.
- •2.3. Ammonia neutralization in the body
- •Storage and transport of ammonia
- •Fumarate pyruvate aspartate
- •2.4. Violations of nitrogen metabolism
- •2.5. Metabolism of individual amino acids
- •2. Metabolism of sulfur amino acids.
- •3. Metabolism of branched chain amino acids.
- •Leu, Ile, Val α-keto acids acyl-CoA derivatives
- •4. Metabolism of dicarboxylic amino acids
- •5. Metabolism of diaminomonocarboxylic acids.
- •6. Metabolism of phenylalanine and tyrosine.
- •7. Metabolism of tryptophan.
- •2.6. Metabolism of conjugated proteins. Chromoproteins metabolism
- •The degradation of hemoglobin in the tissues (the formation of bile pigments)
- •The hemoglobin biosynthesis
- •2.7. Nucleoproteins metabolism
- •Adenine hypoxanthine; guanine xanthine
- •The synthesis of pyrimidine nucleotides u, c, t
- •I nosine-5'-phosphate Xantosine-5'-phosphate
- •The synthesis of deoxyribonucleotides
- •Test questions
- •3. Template biosynthesis
- •3.1. Biosynthesis of nucleic acids
- •3.1.1. Dna biosynthesis (replication)
- •Synthesis of dna in the rna template
- •3.1.2. Rna biosynthesis
- •Rna synthesis in rna template
- •3.2. Protein biosynthesis
- •The properties of the genetic code
- •Preparatory stage of protein synthesis
- •3.2.1. Translation
- •1. Initiation.
- •2. Elongation.
- •3.2.2. Post-translational modification of proteins
- •Transport of synthesized proteins through membranes
- •3.2.3. Regulation of protein biosynthesis
- •3.3. Genetic engineering
- •Test questions
- •4. Hormones, nomenclature, classification
- •Test questions
- •5. Metabolic processes interaction
- •In the organism
- •Protein and carbohydrate metabolisms interconnection
- •Protein and lipid metabolisms interconnection
- •Carbohydrate and lipid metabolisms interconnection
- •Levels of homeostasis regulation
- •Changes in metabolism during starvation
- •Test questions
- •6. Mineral and water and salt metabolism
- •6.1. Water in the human body
- •6.2. Salt metabolism
- •7. Renal biochemistry. The role of the kidneys in the regulation of water and salt metabolism
- •7.1. Excretory function of the kidneys
- •7.2. Homeostatic function of the kidneys
- •7.3. Metabolic functions of the kidneys
- •7.4. Regulation of water and salt metabolism and uropoiesis
- •Test Questions
- •8. Biochemistry of nervous tissue
- •8.1. Features of metabolism of nervous tissue
- •8.2. Mechanism of nerve impulses conduction
- •Cholinergic synapses
- •Test Questions
- •9. Biochemistry of muscle tissue
- •9.1. Chemical composition of muscle tissue
- •Sources of energy for muscle work
- •9.2. Mechanism of muscle contraction and its regulation
- •9.3. Biochemical changes in muscles within pathology
- •Test Questions
- •10. Biochemistry of extracellular matrix
- •10.1. Structure of extracellular matrix
- •Collagens.
- •Fibril-forming collagens
- •Collagen, forming a tela
- •10.2. Features of metabolism of extracellular matrix Catabolism of extracellular matrix proteins
- •Reparation of damage of the extracellular matrix in norm
- •Biochemical changes of connective tissue with aging
- •The lesions of connective tissue
- •11. Blood biochemistry
- •11.1. Respiratory function of blood. Buffer systems of blood
- •11.2. Blood coagulation system. Changes in pathology
- •Extrinsic and intrinsic pathways of blood clotting
- •Test Questions
- •12. Liver biochemistry
- •12.1. Main functions of the liver
- •The role of the liver in the metabolism of carbohydrates
- •The role of liver in lipid metabolism
- •The role of the liver in the metabolism of proteins and amino acids
- •12.2. Choleresis. Pigment metabolism. Types of jaundice
- •The cleavage of hemoglobin: hemoglobinverdoglobinbiliverdinbilirubin.
- •12.3. Detoxifying liver function
- •Test Questions
- •13. Regulation of calcium and phosphorus metabolism
- •14. Bone biochemistry
- •Test Questions
- •II. Laboratory workshop Laboratory work 1. Lipid metabolism
- •Hydrolysis of milk fat by lipase
- •Test Questions
- •Laboratory work 2. Phospholipids. Cholesterol
- •4.1. Schiff reaction.
- •4.2. Salkowski reaction.
- •4.3. Lieberman-Burchard reaction.
- •Preparation of solutions of cholesterol for the calibration curve
- •Test Questions
- •Laboratory work 3. Digestion of proteins. Determination of acids of gastric contents
- •Experiment 2. Qualitative determination of free hydrochloric acid in gastric juice using indicator congo red.
- •Results of the determination of gastric acidity
- •Test Questions
- •Laboratory work 4. The end products of nitrogen metabolism
- •Test Questions
- •Laboratory work 5. Hormones
- •2.1. Biuretic reaction.
- •2.2. Millon’s reaction.
- •2.4. Geller’s test.
- •3. Qualitative reaction to thyroxine.
- •4. Qualitative reactions to the 11-dehydro-17-oxykortikosteron (cortisone).
- •4.1. The reaction with phenylhydrazine sulfate.
- •4.2. The reaction with Fehling's reagent.
- •Test Questions
- •Laboratory work 6. Mineral and water and salt metabolism
- •1.1. Determination the pH of saliva.
- •1.2. Detection of phosphates in saliva.
- •2.1. Qualitative detection of chlorides in the urine.
- •2.2. Detection of calcium in the urine.
- •2.3. Detection of phosphates in the urine.
- •The composition of mixtures for the calibration curve
- •Test Questions
- •Laboratory work 7. Urine biochemistry
- •3.1. Qualitative detection and quantitative determination of protein in the urine.
- •3.1.1. The test by boiling in weak acid environment.
- •3.1.2. The test by boiling in an acid medium in the presence of saturated sodium chloride solution.
- •3.1.3. Geller’s test.
- •3.1.4. The test with sulfosalicylic acid.
- •3.1.5. Quantitative determination of protein in the urine by the method of dilution (Brandberg - Roberts - Stolnikov method).
- •Determination of protein in the urine using dilution method
- •3.2. Semi-quantitative method for determining glucose and ketone bodies in urine using test strips.
- •3.3. Detection of blood pigments in the urine by boiling with alkali (Geller’s test).
- •Test Questions
- •Laboratory 8. Blood biochemistry
- •1. Buffer properties of blood serum.
- •2. Quantitative determination of total protein in serum according to biuretic reaction.
- •The composition of mixtures for the ployying of the calibration curve
- •3. Determination of calcium in serum by the method of de Waard.
- •Test Questions
- •Laboratory work 9. Detection of bile pigments in urine
- •Test Questions
- •Laboratory work 10. Biochemistry of bone and connective tissue
- •1. Preparation of extracts of bone and teeth tissues.
- •Test Questions
- •Bibliography
- •Biochemistry
- •In Two Parts Part II
- •392008, Г. Тамбов, ул. Советская, 190г
Lipolysis of triglycerides in adipose tissue
The triglycerides deposited in adipose tissue are hydrolyzed by tissue lipases (triglyceride lipase, diglyceride lipase, monoglyceride lipase) into glycerine and free fatty acids.
The velocity of lipolysis of triglycerides changes under the influence of hormones, in stress, physical exercise, starvation, cooling. Under the influence of hormones (adrenaline, noradrenaline, glucagon) with participation of adenylate cyclase messenger system triglyceride lipase is activated by phosphorylation.
Fatty acids formed during lipolysis can pass from fat depots into blood plasma and be used by tissues and organs as an energy material. Fatty acids are transported as a complex with blood serum albumines. In tissues the complex breaks down, and fatty acids are exposed to β-oxidation. Partially they can be used for synthesis of lipids and cholesterol ethers.
1.3. Fatty acids oxidation
It occurs basically in the liver, kidneys, skeletal and heart muscles, in adipose tissues.
1. Fatty acid (FA) activation. It occurs in cytisole.
R–COOH + HS-CoA + ATP R–CO–S-CoA+AMP+PP1
fatty acid Acyl-CoA-synthetase
2. Transport of fa inside mitochondrion.
Acyl-CoA
Carnitine
Acylcarnitine
Acylcarnitine from cytoplasm diffuses through mitochondrion membrane. Enzyme is cytoplasm carnitine-acyl transferase. Then the reverse reaction starts - splitting of acylcarnitine with the assistance of HS-CoA and mitochondrion carnitine-acyl transferase:
acylcarnitine + НSCоА acyl-CоА + carnitine
It is believed to be the rate-limiting step in fatty acid oxidation.
3. Inside the mitochondrial matrix, fatty acids undergo β-oxidation.
a) dehydrogenation
FAD
FAD H2
Stearyl-CoA
α,β-Dehydrostearyl-CoA
There are three FAD-depending acyl-CoA-dehydrogenases, preferring short, medium and long-chain acyl radical.
b) hydration
Trans-dehydrostearyl CoA
L
β
Oxistearyl CoA
Enoil CoA
hydrase
Hydration is stereospecific. L-isomer is formed.
c) dehydrogenation.
β-Oxiacyl-CoA-dehydrase
L
β-Oxistearyl-CoA
β-Ketostearyl-CoA
NAD+
NADH + H+
Enzyme is 3-hydroxyacyl-CoA-dehydrogenase.
d) thiolase reaction.
3 Ketocyl CoA tyolase Palmitic acid preformed rest Palmityl-CoA Acetyl-CoA
Еnzyme is β-ketothiolase.
During this process, two-carbon molecules acetyl-CoA are repeatedly cleaved from the fatty acid. Acetyl-CoA can then enter the citric acid cycle, which produces NADH and FADH2. NADH and FADH2 are used in the electron transport chain to produce ATP.
Within oxidation of the fatty acid containing n carbon atoms, occurs (n/2 - 1) cycle of β-oxidation and all in all there will be n/2 molecules of acetyl-CoA.
Overall:
Stearyl-CoA + 8 FAD + 8 NAD + + 8 Н2О + 8 НSCоА
9 Acetyl-CoA + 8 FADН2 + 8 NADН + 8Н+
Balance of energy. At each cycle of β-oxidation one molecule FADН2 is formed and one molecule of NADН. In the oxidation in a respiratory chain and coupled with it phosphorylation they give: FADН2 - 2 molecules of ATP and NADН - 3 molecules ATP, i.e. there are 5 molecules of АТP is formed in one cycle. In the case of stearic acid - 5 х 8 = 40 molecules of АТP. 9 molecules of acetyl-CoA are formed; each of them in a Crebs cycle gives 12 molecules of АТP, all in all - 12 х 9 = 108 molecules of АTP.
Total: 40 + 108 - 1 (for the formation of FA active form) = 147 АТP.
Approximately 40% from all energy of FA oxidation in an organism is used for the АТP synthesis, and the rest is lost as heat.
Oxidation of FA with an odd number of carbon atoms
In lipids of different plants and some of sea organisms there are fatty acids with an odd number of atoms of carbon. They also undergo β-oxidation. However the end product of β-oxidations of the higher fatty acids with the odd number of carbon atoms is propionyl-CoA.
Propionyl-CoA turns into succinyl-CoA by means of two consecutive reactions - carboxylations and isomerizations:
Succinyl-CoA
ATP
ADP + H3PO4
Propionyl-CoA-carboxylase
(biotyprotein)
Methylmalonyl-CoA
Methylmalonyl-CoA
CoA-carbonylmutase
(B12-protein)
Further on succinyl-CoA joins the cycle of tricarboxylic acids.
