- •Federal Agency of Education tambov state university named after g.R. Derzhavin
- •Biochemistry (part I)
- •Tambov 2012
- •I. Theoretical part The subject Of biological chemistry
- •1. Chemistry of proteins
- •1.1. Methods of exctraction and purification of proteins
- •1.2. Functions of proteins
- •1.3. Amino-acid composition of proteins
- •1.4. The structural organization of proteins
- •1.5. Physical and chemical properties of proteins
- •1.6. Classification of proteins
- •1.6.1. Simple proteins
- •1. Albumins and globulins.
- •2. Protamines and histones.
- •3. Prolamins and glutelins.
- •1.6.2. Conjugative proteins
- •1. Proteins containing non-heme iron.
- •Nucleic acids
- •The structure of nucleic acids
- •Test Questions
- •2. Enzymes
- •2.1. The chemical nature of enzymes
- •2.2. The mechanism of enzymes action
- •2.3. Kinetics of enzymatic reactions
- •2.4. Enzyme properties
- •2.5. Regulation of enzyme activity
- •1. Control of the enzyme amount.
- •2. Control of enzyme activity.
- •2.1. The influence of activators and inhibitors on the enzymes.
- •2.3. Chemical modification of the enzyme.
- •2.4. Allosteric regulation.
- •2.6. Classification and nomenclature of enzymes
- •2.7. Enzymes in medicine
- •Test Questions
- •3. Vitamins
- •3.1. Fat soluble vitamins
- •3.2. Water soluble vitamins
- •Vitamin-like substances
- •Test Questions
- •4. Basic principles of biomembranes’ organisation
- •4.1. Structure and functions of membranes
- •1. Phospholipids (90%) - glycerophospholipids and sphingophospholipids:
- •4.2. Transport of substances across membranes
- •2. Facilitated diffusion
- •Test Questions
- •5. Transmembrane transduction of the hormonal signal
- •Test Questions
- •6. Introduction to metabolism
- •6.1. Stages of catabolism
- •III. A common catabolic pathway.
- •6.2. Bioenergetics
- •6.3. Organization and operation of the respiratory chain
- •6.4. Uncoupling of oxidation from phosphorylation
- •6.5. Generation of free radicals in cells
- •6.6. Reactions of the common catabolic pathway
- •6.6.1. Oxidative decarboxylation of pyruvate
- •6.6.2. Citric acid cycle
- •7. Carbohydrate metabolism
- •7.1. Digestion of carbohydrates
- •7.2. Glycogen metabolism
- •7.3. Glycolysis
- •7.4. The inclusion of fructose and galactose
- •In glycolysis
- •7.5. The shuttle mechanisms
- •7.6. Cori cycle
- •7.7. Alcoholic fermentation
- •C6h12o6 → 2 ch3chohcooh
- •7.8. Pentose phosphate pathway (hexose monophosphate shunt)
- •7.9. Gluconeogenesis
- •Synthesis of glucose from the pyruvic acid.
- •Fructose bisphosphatase
- •Glucose-6-phosphatase
- •7.10. Regulation of carbohydrate metabolism
- •Glucose → glucose-6-phosphate.
- •Pyruvate → oxaloacetate → phosphoenolpyruvate
- •7.11. Violations of carbohydrate metabolism
- •Violation of hydrolysis and absorption of carbohydrates
- •Violations of the intermediate metabolism of carbohydrates
- •Quiz Questions
- •II. Laboratory practice Laboratory work 1. The analysis of amino acids and proteins
- •1. Qualitative analysis of amino acid mixtures by thing layer chromatography method.
- •2. Colour reaction of proteins.
- •2.1. Millon’s reaction.
- •2.2. Ninhydrin’s reaction.
- •3. Reactions of precipitation of proteins.
- •3.1. Precipitation of proteins with salts of heavy metals.
- •3.3. Precipitation of proteins with the help of concentrated mineral acids.
- •3.4. Precipitation of proteins by organic acids.
- •Test questions
- •Laboratory work 2. Conjugated proteins: glycoproteins and phosphoproteins
- •1. Phosphoproteins.
- •1.1. Proof of protein component’s present in the casein hydrolyzate.
- •1.2. Proof of phosphoric acid’s presence in the casein hydrolyzate.
- •1.3. Determination of the isoelectric point of casein.
- •2.4. Proof of carbohydrate’s presence in the egg albumin.
- •Test questions
- •Laboratory work 3. Conjugated proteins: nucleoproteins and chromoproteins
- •1. Nucleoproteins
- •1.1. Isolation of deoxyribonucleoproteins from the spleen.
- •1.2. Reaction with diphenylamine.
- •2. Chromoproteins.
- •2.1. Benzidine test for hemin group of hemoglobin.
- •Test questions
- •Laboratory work 4. Enzymes
- •1. Detection of peroxidase in potatoes.
- •2. Detection of pepsin in the gastric juice.
- •3. Hydrolysis of starch by α-amylase.
- •4. Specificity of amylase and sucrase enzymes action.
- •Test questions
- •Laboratory work 5. Identifying the activity of enzymes
- •1. The influence of activators and inhibitors upon activity of enzymes.
- •1. The influence of activators and inhibitors upon α-amylase.
- •1.2. Inhibitory effect of chloride ions on dehydrogenase complex of potatoes.
- •2. Identifying the activity of α-amylase according to Wolgemut.
- •Test questions
- •Inhibitor calimine
- •Laboratory work 6. Vitamins
- •Vitamin a (vitamin a, retinol)
- •Vitamin d (calciferol)
- •3.1. Reaction with concentrated nitric acid.
- •3.2. Reaction with ferric chloride (III).
- •9.2. Reaction with methylene-blue.
- •Test questions
- •Laboratory work 7. Oxidoreductases. Common catabolic pathway
- •1. Comparison of redox-potentials of riboflavin and methylene blue.
- •2. Identifying of catalase activity according to a.N. Bach and а.I. Oparin.
- •Test questions
- •Laboratory work 8. Carbohydrate metabolism
- •2.1. Trommer’s test with copper hydroxide.
- •2.2. Discovery of fructosuria by Selivanov’s test.
- •2.3. Enzymatic method of semi-quantitative identification of glucose in urine with the help of "GlucoPhan" test strip.
- •Test questions
- •References
Test questions
1. List the functions of chromoproteins in the body.
2. Specify the structure of the protein part of hemoglobin.
3. Why the hemoglobin of the embryo and the child has a different affinity for oxygen?
4. After the fire dead was founded. How in a simple way we can to determine whether a person was killed in a fire or died before the fire?
5. Describe the chemical composition of nucleoproteins and their functions in the body.
6. What is more soluble in water: the nucleic acids or nucleoproteins? Why?
Laboratory work 4. Enzymes
1. Detection of peroxidase in potatoes.
After grating some potatoes a little amount is placed into a test tube. 1 ml of 1% solution of pyrogallol and 2 drops of 2% solution of hydrogen peroxide are added. Yellow-brown sediment of purpurogallin settles down when left to stand undisturbed:
Numerous dehydrogenating (oxidation) of pyrogallol and a number of intermediate products before purpurogallin formation takes place in participation with peroxidase, giving atoms of hydrogen from the substrate to the hydrogen peroxide.
2. Detection of pepsin in the gastric juice.
5 ml of milk-acetate mixture are poured into a test tube. Then this mixture is placed into a thermostat at a temperature of 25°С. After the test tube heats up to the given temperature they add 0,1 ml of the gastric juice to it and mix. They watch the moment of the first casein clots appearance on the sides of the test tube. This moment testifies the completion of the reaction of soluble caseinogen conversion into dissoluble casein under the influence of proteolitic enzyme pepsin.
3. Hydrolysis of starch by α-amylase.
A mouth is rinsed 2–3 times with water to remove the scraps of food. 50 ml of distilled water are measured and the mouth is being rinsed for 3-5 minutes for several times. The collected liquid is filtered through cotton wool. And the filtrate is used for working.
Table 1. The results of hydrolysis of starch.
№ |
The contents of the test tube |
temperature, °С |
Time, min. |
Color in reaction with iodine |
the presence of hydrolysis |
1 |
3 ml. of starch solution + 2 ml. of 10% H2SO4 |
37 |
2 4 … |
|
|
2 |
3 ml. of starch solution + 2 ml. of 10% H2SO4 |
100 |
2 4 … |
|
|
3 |
3 ml. of starch solution + 3 ml. of amylase solution |
37 |
2 4 … |
|
|
4 |
3 ml. of starch solution + 3 ml. of amylase solution + 1 ml. 2 n. НС1 |
37 |
2 4 … |
|
|
5 |
3 ml. of starch solution + 3 ml. of the boiled amylase solution |
37 |
2 4 … |
|
|
2 water baths with a temperature of 37-40 and 100°С are prepared. They pour the solutions into the test tubes according to the table. The enumerated test tubes are placed into the water baths. Every 2 minutes they place a drop of Lugol’s solution on the glass plate with a glass stick. And then а drop of the solution from the test tube is placed with a clean stick. As a result the mixture of the two drops gives coloring. The experiment lasts for 10-15 minutes. The results of the experiment and the conclusions of hydrolysis passing (full, partial or does not pass) are given in the table (table 1).
The scheme of hydrolysis of starch by α-amylase:
(С6Н10О5)n starch |
|
(С6Н10О5)m amylodextrines |
|
(С6Н10О5)k erythrodextrines |
|
(С6Н10О5)l achrodextrines |
|
(С6Н10О5)x maltodextrines |
|
С12Н22О22 maltose |
|
